UHGV-0045820

Genome information

Genome length 41,561 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9661

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045820
vOTU ID	vOTU-063187
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3486
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9661
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.11
Jumbo phage	No

Genome content
Genome length	41,561 bps
GC content	29.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	88.23%
Average CDS length	593.76 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045820_1	KOfam	K02051	ABC.SN.S; NitT/TauT family transport system substrate-binding protein	NA
UHGV-0045820_1	UniRef90	UniRef90_A0A1C6HWG1	NMT1 domain-containing protein	NA
UHGV-0045820_1	eggNOG-mapper	1414720.CBYM010000006_gene1188	NMT1/THI5 like	NA
UHGV-0045820_1	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-0045820_1	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA
UHGV-0045820_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0045820_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0045820_2	UniRef90	UniRef90_A0A1C6HWU7	DNA-invertase hin	NA
UHGV-0045820_2	eggNOG-mapper	1414720.CBYM010000006_gene1187	resolvase	NA
UHGV-0045820_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0045820_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0045820_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0045820_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0045820_2	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0045820_3	PHROG	phrog_87	metallo-protease	other
UHGV-0045820_3	UniRef90	UniRef90_A0A174F3Q6	NA	NA
UHGV-0045820_3	eggNOG-mapper	1414720.CBYM010000006_gene1186	Zn peptidase	NA
UHGV-0045820_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0045820_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0045820_5	PHROG	phrog_10678	NA	unknown function
UHGV-0045820_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0045820_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0045820_7	UniRef90	UniRef90_A0A174F1W4	Transcriptional regulator	NA
UHGV-0045820_7	eggNOG-mapper	1414720.CBYM010000006_gene1182	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045820_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045820_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0045820_7	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0045820_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0045820_8	UniRef90	UniRef90_A0A174EZQ0	DNA-binding phage protein	NA
UHGV-0045820_8	eggNOG-mapper	1414720.CBYM010000006_gene1181	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045820_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045820_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0045820_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0045820_11	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0045820_11	UniRef90	UniRef90_A0A174F3X7	BRO domain protein	NA
UHGV-0045820_11	eggNOG-mapper	1414720.CBYM010000006_gene1178	Phage antirepressor protein KilAC domain	NA
UHGV-0045820_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0045820_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0045820_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0045820_11	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-0045820_13	UniRef90	UniRef90_A0A1C6HV05	Spo0E like sporulation regulatory protein	NA
UHGV-0045820_13	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0045820_14	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0045820_14	UniRef90	UniRef90_A0A174EZ57	NA	NA
UHGV-0045820_14	eggNOG-mapper	1415774.U728_1122	Bacteriophage Mu Gam like protein	NA
UHGV-0045820_14	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0045820_14	Structural annotation	PF07352	NA	NA
UHGV-0045820_15	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0045820_15	UniRef90	UniRef90_A0A1C6HTX6	ERF superfamily	NA
UHGV-0045820_15	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0045820_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-0045820_15	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0045820_16	Structural annotation	PF19849	NA	NA
UHGV-0045820_17	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0045820_17	UniRef90	UniRef90_A0A6B4KH41	DNA replication protein DnaD	NA
UHGV-0045820_17	eggNOG-mapper	1415774.U728_770	DnaD domain protein	NA
UHGV-0045820_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0045820_17	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-0045820_19	PHROG	phrog_25509	NA	unknown function
UHGV-0045820_19	eggNOG-mapper	1280689.AUJC01000003_gene942	NA	NA
UHGV-0045820_20	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0045820_20	UniRef90	UniRef90_A0A174EZA1	Replication terminator protein, phage associated	NA
UHGV-0045820_20	eggNOG-mapper	1415774.U728_1693	replication terminator protein, phage associated	NA
UHGV-0045820_21	PHROG	phrog_1029	NA	unknown function
UHGV-0045820_21	eggNOG-mapper	1391647.AVSV01000003_gene1793	NA	NA
UHGV-0045820_21	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0045820_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0045820_23	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0045820_23	UniRef90	UniRef90_A0A1C6K6Q7	Holliday junction resolvase	NA
UHGV-0045820_23	eggNOG-mapper	1499683.CCFF01000014_gene3920	Endodeoxyribonuclease RusA	NA
UHGV-0045820_23	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0045820_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0045820_23	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0045820_24	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045820_24	UniRef90	UniRef90_UPI0006C25307	HNH endonuclease	NA
UHGV-0045820_24	eggNOG-mapper	1415774.U728_1689	HNH endonuclease	NA
UHGV-0045820_24	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0045820_24	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0045820_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0045820_24	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0045820_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0045820_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0045820_25	UniRef90	UniRef90_A0A174F3N4	Single-stranded DNA-binding protein	NA
UHGV-0045820_25	eggNOG-mapper	1414720.CBYM010000010_gene3150	Single-stranded DNA-binding protein	NA
UHGV-0045820_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0045820_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0045820_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0045820_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0045820_25	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0045820_26	eggNOG-mapper	1414720.CBYM010000040_gene1631	NA	NA
UHGV-0045820_28	PHROG	phrog_14328	NA	unknown function
UHGV-0045820_30	eggNOG-mapper	1414720.CBYM010000040_gene1636	NA	NA
UHGV-0045820_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0045820_31	UniRef90	UniRef90_A0A174F044	NA	NA
UHGV-0045820_31	eggNOG-mapper	545697.HMPREF0216_02836	NA	NA
UHGV-0045820_31	Structural annotation	PF08281, MF_00245, NF001068, COG2739	NA	NA
UHGV-0045820_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0045820_32	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045820_32	UniRef90	UniRef90_A0A174GQ50	Phage-related Zn finger domain-containing protein	NA
UHGV-0045820_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0045820_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0045820_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0045820_33	UniRef90	UniRef90_A0A1C6JZQ6	Phage terminase, small subunit	NA
UHGV-0045820_33	eggNOG-mapper	86416.Clopa_2744	phage terminase small subunit	NA
UHGV-0045820_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0045820_33	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0045820_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0045820_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0045820_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0045820_34	UniRef90	UniRef90_A0A174GQG9	Putative phage terminase, large subunit	NA
UHGV-0045820_34	eggNOG-mapper	1499684.CCNP01000020_gene2290	Terminase	NA
UHGV-0045820_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0045820_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0045820_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0045820_34	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0045820_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0045820_35	UniRef90	UniRef90_A0A174GUK4	Phage portal protein, HK97 family	NA
UHGV-0045820_35	eggNOG-mapper	1476973.JMMB01000007_gene1759	Phage portal protein	NA
UHGV-0045820_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0045820_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0045820_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0045820_35	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0045820_36	KOfam	K06904	NA	NA
UHGV-0045820_36	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0045820_36	UniRef90	UniRef90_A0A174GVP1	HK97 family phage prohead protease	NA
UHGV-0045820_36	eggNOG-mapper	1476973.JMMB01000007_gene1760	Caudovirus prohead serine protease	NA
UHGV-0045820_36	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0045820_36	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0045820_36	COG	COG3740	Phage head maturation protease	NA
UHGV-0045820_36	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0045820_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0045820_37	UniRef90	UniRef90_A0A174GVS4	Phage major capsid protein, HK97 family	NA
UHGV-0045820_37	eggNOG-mapper	536233.CLO_1363	Phage capsid family	NA
UHGV-0045820_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0045820_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0045820_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0045820_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0045820_38	UniRef90	UniRef90_UPI0006A71EE9	head-tail connector protein	NA
UHGV-0045820_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0045820_39	UniRef90	UniRef90_A0A174GUX3	Phage head-tail joining protein	NA
UHGV-0045820_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0045820_39	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0045820_40	eggNOG-mapper	536233.CLO_1366	NA	NA
UHGV-0045820_41	eggNOG-mapper	536233.CLO_1366	NA	NA
UHGV-0045820_42	eggNOG-mapper	536233.CLO_1367	NA	NA
UHGV-0045820_42	Structural annotation	PF05657	NA	NA
UHGV-0045820_43	PHROG	phrog_88	major tail protein	tail
UHGV-0045820_43	UniRef90	UniRef90_A0A173YQ31	Phage major tail protein, phi13 family	NA
UHGV-0045820_43	eggNOG-mapper	1151292.QEW_0347	Phage tail tube protein	NA
UHGV-0045820_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0045820_43	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0045820_44	eggNOG-mapper	632245.CLP_2688	NA	NA
UHGV-0045820_44	Structural annotation	PF11836	NA	NA
UHGV-0045820_45	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0045820_45	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0045820_45	UniRef90	UniRef90_A0A174GWB8	TP901 family phage tail tape measure protein	NA
UHGV-0045820_45	eggNOG-mapper	632245.CLP_2687	phage tail tape measure protein	NA
UHGV-0045820_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0045820_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0045820_45	COG	COG5283	Phage-related tail protein	NA
UHGV-0045820_45	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0045820_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0045820_46	UniRef90	UniRef90_A0A174GT71	Tail component family protein	NA
UHGV-0045820_46	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0045820_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-0045820_46	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0045820_47	PHROG	phrog_2566	NA	unknown function
UHGV-0045820_47	UniRef90	UniRef90_U2PXN2	Prophage pi2 protein 49	NA
UHGV-0045820_47	eggNOG-mapper	702450.CUW_0544	NA	NA
UHGV-0045820_48	PHROG	phrog_1401	NA	unknown function
UHGV-0045820_48	UniRef90	UniRef90_UPI0018A98488	NA	NA
UHGV-0045820_48	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0045820_48	Structural annotation	PF07761	NA	NA
UHGV-0045820_49	KOfam	K17975	KTN1; kinectin	NA
UHGV-0045820_49	PHROG	phrog_16267	NA	unknown function
UHGV-0045820_49	UniRef90	UniRef90_UPI0006DC2AEE	tail fiber domain-containing protein	NA
UHGV-0045820_49	eggNOG-mapper	457396.CSBG_01060	Phage minor structural protein	NA
UHGV-0045820_49	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0045820_49	COG	COG4926	Phage-related protein	NA
UHGV-0045820_50	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-0045820_50	UniRef90	UniRef90_UPI0006BECC9D	BhlA/UviB family holin-like peptide	NA
UHGV-0045820_50	eggNOG-mapper	536232.CLM_2038	BhlA holin family	NA
UHGV-0045820_50	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0045820_51	PHROG	phrog_13256	NA	unknown function
UHGV-0045820_51	eggNOG-mapper	457396.CSBG_01062	NA	NA
UHGV-0045820_52	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0045820_52	PHROG	phrog_435	endolysin	lysis
UHGV-0045820_52	UniRef90	UniRef90_UPI0006C11D0D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0045820_52	eggNOG-mapper	1414720.CBYM010000001_gene715	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0045820_52	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0045820_52	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0045820_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0045820_52	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0045820_53	PHROG	phrog_3162	NA	unknown function
UHGV-0045820_53	UniRef90	UniRef90_UPI00119CF340	HipA domain-containing protein	NA
UHGV-0045820_53	eggNOG-mapper	445335.CBN_1405	NA	NA
UHGV-0045820_53	Pfam	PF20613	HipA-like kinase	HipA_2
UHGV-0045820_53	Structural annotation	PF20613, TIGR03843, COG3550	NA	NA
UHGV-0045820_54	PHROG	phrog_5137	NA	unknown function
UHGV-0045820_54	UniRef90	UniRef90_UPI0006C214F4	NA	NA
UHGV-0045820_54	Pfam	PF11236	NA	DUF3037
UHGV-0045820_54	Structural annotation	PF11236, PF11103	NA	NA
UHGV-0045820_56	UniRef90	UniRef90_A0A822UNM2	Membrane protein	NA
UHGV-0045820_56	eggNOG-mapper	545697.HMPREF0216_02868	NA	NA
UHGV-0045820_58	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0045820_58	UniRef90	UniRef90_A0A174HPE2	DNA-binding phage protein	NA
UHGV-0045820_58	eggNOG-mapper	1414720.CBYM010000001_gene720	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045820_58	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0045820_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045820_58	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0045820_58	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0045820_59	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0045820_59	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0045820_59	UniRef90	UniRef90_A0A174HIW4	StbA family protein	NA
UHGV-0045820_59	eggNOG-mapper	1414720.CBYM010000001_gene721	StbA protein	NA
UHGV-0045820_59	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0045820_59	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0045820_59	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0045820_59	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0045820_60	eggNOG-mapper	1414720.CBYM010000001_gene722	NA	NA
UHGV-0045820_61	UniRef90	UniRef90_UPI0018AC6FBA	ribbon-helix-helix protein, CopG family	NA