UHGV-0045930

Genome information

Genome length 37,508 bps

CDS count 59

Completeness 82.40% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045930
vOTU ID	vOTU-017562
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2756
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	34
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.75
Jumbo phage	No

Genome content
Genome length	37,508 bps
GC content	41.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	92.00%
Average CDS length	587.75 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045930_1	KOfam	K14059	int; integrase	NA
UHGV-0045930_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0045930_1	UniRef90	UniRef90_B0MB91	Site-specific recombinase, phage integrase family	NA
UHGV-0045930_1	eggNOG-mapper	411490.ANACAC_00818	Belongs to the 'phage' integrase family	NA
UHGV-0045930_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045930_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0045930_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0045930_2	UniRef90	UniRef90_UPI0001F01B9D	Ig-like domain-containing protein	NA
UHGV-0045930_2	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0045930_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0045930_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0045930_4	UniRef90	UniRef90_UPI0001F01B9E	helix-turn-helix domain-containing protein	NA
UHGV-0045930_4	eggNOG-mapper	1285586.H131_22057	Peptidase S24-like	NA
UHGV-0045930_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0045930_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0045930_4	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0045930_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0045930_5	UniRef90	UniRef90_UPI0001F01B9F	helix-turn-helix transcriptional regulator	NA
UHGV-0045930_5	eggNOG-mapper	883113.HMPREF9708_01473	Helix-turn-helix XRE-family like proteins	NA
UHGV-0045930_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045930_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0045930_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0045930_6	PHROG	phrog_6058	NA	unknown function
UHGV-0045930_6	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0045930_6	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0045930_6	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0045930_7	PHROG	phrog_7488	NA	unknown function
UHGV-0045930_7	UniRef90	UniRef90_A0A1I0VJB1	NA	NA
UHGV-0045930_10	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0045930_10	UniRef90	UniRef90_UPI0001F01BA4	NA	NA
UHGV-0045930_10	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0045930_10	Pfam	PF06378	NA	DUF1071
UHGV-0045930_10	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0045930_11	PHROG	phrog_398	NA	unknown function
UHGV-0045930_11	UniRef90	UniRef90_UPI0001F01BA5	putative HNHc nuclease	NA
UHGV-0045930_11	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0045930_11	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0045930_11	Structural annotation	PF16784, NF007281	NA	NA
UHGV-0045930_12	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0045930_12	UniRef90	UniRef90_A0A4V1EFZ2	NA	NA
UHGV-0045930_12	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-0045930_12	Pfam	PF06356	NA	DUF1064
UHGV-0045930_12	Structural annotation	PF06356	NA	NA
UHGV-0045930_13	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0045930_13	UniRef90	UniRef90_A0A1U7MLB1	Phg_2220_C domain-containing protein	NA
UHGV-0045930_13	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0045930_14	Structural annotation	PF07106, MF_01909, TIGR02719, COG3355	NA	NA
UHGV-0045930_15	PHROG	phrog_151	transposase	integration and excision
UHGV-0045930_15	UniRef90	UniRef90_A0A374AGS2	Transposase	NA
UHGV-0045930_15	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0045930_15	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0045930_15	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0045930_16	PHROG	phrog_236	nucleotide kinase	other
UHGV-0045930_16	UniRef90	UniRef90_UPI0006823CE8	NA	NA
UHGV-0045930_16	eggNOG-mapper	227720.Q858M9_9CAUD	NA	NA
UHGV-0045930_16	Pfam	PF11753	NA	DUF3310
UHGV-0045930_17	PHROG	phrog_236	nucleotide kinase	other
UHGV-0045930_17	UniRef90	UniRef90_UPI0006823CE8	NA	NA
UHGV-0045930_17	eggNOG-mapper	227720.Q858M9_9CAUD	NA	NA
UHGV-0045930_17	Pfam	PF11753	NA	DUF3310
UHGV-0045930_17	Structural annotation	PF11753	NA	NA
UHGV-0045930_20	UniRef90	UniRef90_A0A0F0C7A4	NA	NA
UHGV-0045930_21	UniRef90	UniRef90_R5F553	Phosphoribosylformylglycinamidine synthase II	NA
UHGV-0045930_21	eggNOG-mapper	1414720.CBYM010000040_gene1633	NA	NA
UHGV-0045930_22	PHROG	phrog_15198	NA	unknown function
UHGV-0045930_22	UniRef90	UniRef90_UPI000682E6D0	NA	NA
UHGV-0045930_22	Pfam	PF04448	NA	DUF551
UHGV-0045930_23	PHROG	phrog_2776	NA	unknown function
UHGV-0045930_23	UniRef90	UniRef90_A0A5S4VR73	Helix-turn-helix domain-containing protein	NA
UHGV-0045930_23	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0045930_23	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0045930_26	PHROG	phrog_1974	NA	unknown function
UHGV-0045930_26	UniRef90	UniRef90_UPI00164B83C5	nucleoid-associated protein	NA
UHGV-0045930_26	eggNOG-mapper	411490.ANACAC_00791	37-kD nucleoid-associated bacterial protein	NA
UHGV-0045930_26	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0045930_26	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0045930_26	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0045930_27	AcrCatalog	cluster_72382	NA	NA
UHGV-0045930_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0045930_28	UniRef90	UniRef90_UPI0011C7CB46	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0045930_28	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-0045930_28	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0045930_29	PHROG	phrog_1233	NA	unknown function
UHGV-0045930_29	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0045930_29	Structural annotation	PF13058	NA	NA
UHGV-0045930_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0045930_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0045930_30	UniRef90	UniRef90_UPI0001F01BB6	terminase small subunit	NA
UHGV-0045930_30	eggNOG-mapper	1158614.I592_02434	Terminase small subunit	NA
UHGV-0045930_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0045930_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0045930_31	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0045930_31	UniRef90	UniRef90_J9CV59	Terminase, large subunit (Fragment)	NA
UHGV-0045930_31	eggNOG-mapper	411468.CLOSCI_00293	TIGRFAM Phage	NA
UHGV-0045930_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0045930_31	COG	COG5410	NA	NA
UHGV-0045930_32	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0045930_32	UniRef90	UniRef90_UPI00164E3225	phage terminase large subunit	NA
UHGV-0045930_32	eggNOG-mapper	411468.CLOSCI_00293	TIGRFAM Phage	NA
UHGV-0045930_32	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0045930_32	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0045930_32	COG	COG5410	NA	NA
UHGV-0045930_32	Structural annotation	PF17289, MF_04147, NF033889, COG5362	NA	NA
UHGV-0045930_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0045930_33	UniRef90	UniRef90_UPI0001F01BB9	phage portal protein	NA
UHGV-0045930_33	eggNOG-mapper	411468.CLOSCI_00292	Phage portal protein, SPP1 family	NA
UHGV-0045930_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0045930_33	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0045930_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0045930_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0045930_34	UniRef90	UniRef90_UPI001A999FF7	minor capsid protein	NA
UHGV-0045930_34	eggNOG-mapper	1411095.X5JAI9_9CAUD	Phage Mu protein F like protein	NA
UHGV-0045930_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0045930_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0045930_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0045930_36	UniRef90	UniRef90_UPI0001F01BBC	phage scaffolding protein	NA
UHGV-0045930_36	eggNOG-mapper	411468.CLOSCI_00287	Phage minor structural protein GP20	NA
UHGV-0045930_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0045930_36	Structural annotation	PF06810	NA	NA
UHGV-0045930_37	PHROG	phrog_247	major head protein	head and packaging
UHGV-0045930_37	UniRef90	UniRef90_UPI0001F01BBD	major capsid protein	NA
UHGV-0045930_37	eggNOG-mapper	411468.CLOSCI_00286	NA	NA
UHGV-0045930_37	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0045930_37	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0045930_38	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0045930_38	UniRef90	UniRef90_UPI0011C9C696	phage head-tail connector protein	NA
UHGV-0045930_38	eggNOG-mapper	357809.Cphy_2963	NA	NA
UHGV-0045930_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0045930_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0045930_39	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0045930_39	UniRef90	UniRef90_A0A174KZ65	NA	NA
UHGV-0045930_39	eggNOG-mapper	1123511.KB905868_gene179	NA	NA
UHGV-0045930_39	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0045930_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0045930_40	UniRef90	UniRef90_UPI0001F01BC0	HK97 gp10 family phage protein	NA
UHGV-0045930_40	eggNOG-mapper	796940.HMPREF9628_01301	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0045930_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0045930_40	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0045930_41	PHROG	phrog_525	NA	unknown function
UHGV-0045930_41	UniRef90	UniRef90_A0A2K9P241	NA	NA
UHGV-0045930_41	eggNOG-mapper	526218.Sterm_1435	NA	NA
UHGV-0045930_41	Pfam	PF20765	NA	DUF6838
UHGV-0045930_41	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0045930_42	PHROG	phrog_966	NA	unknown function
UHGV-0045930_43	PHROG	phrog_279	tail sheath	tail
UHGV-0045930_43	UniRef90	UniRef90_UPI00068084DA	phage tail sheath family protein	NA
UHGV-0045930_43	eggNOG-mapper	272563.CD630_09540	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0045930_43	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0045930_43	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0045930_43	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0045930_43	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0045930_44	PHROG	phrog_365	tail protein	tail
UHGV-0045930_44	UniRef90	UniRef90_UPI0001F01BC4	phage tail tube protein	NA
UHGV-0045930_44	eggNOG-mapper	357809.Cphy_2957	Phage tail tube protein	NA
UHGV-0045930_44	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0045930_44	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0045930_45	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0045930_45	UniRef90	UniRef90_UPI0011CA2C68	phage portal protein	NA
UHGV-0045930_45	eggNOG-mapper	696281.Desru_1317	PFAM Phage XkdN-like protein	NA
UHGV-0045930_45	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0045930_45	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0045930_46	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0045930_46	UniRef90	UniRef90_UPI0001F01BC6	tape measure protein	NA
UHGV-0045930_46	eggNOG-mapper	552396.HMPREF0863_00318	tape measure	NA
UHGV-0045930_46	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0045930_46	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0045930_46	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0045930_46	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-0045930_47	PHROG	phrog_380	endolysin	lysis
UHGV-0045930_47	UniRef90	UniRef90_UPI0011CAAB8B	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0045930_47	eggNOG-mapper	1408823.AXUS01000024_gene2729	LysM domain	NA
UHGV-0045930_47	Pfam	PF01476	LysM domain	LysM
UHGV-0045930_47	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0045930_48	PHROG	phrog_400	tail protein	tail
UHGV-0045930_48	UniRef90	UniRef90_UPI0001F01BC8	CHAP domain-containing protein	NA
UHGV-0045930_48	eggNOG-mapper	1042156.CXIVA_01680	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0045930_48	Pfam	PF05257	CHAP domain	CHAP
UHGV-0045930_48	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0045930_48	Structural annotation	PF14594, PF00877, NF033848, TIGR02594, COG4379, COG3738	NA	NA
UHGV-0045930_49	PHROG	phrog_579	NA	unknown function
UHGV-0045930_49	UniRef90	UniRef90_UPI00164D1FA6	NA	NA
UHGV-0045930_49	eggNOG-mapper	1449050.JNLE01000005_gene4833	NA	NA
UHGV-0045930_49	Pfam	PF10844	NA	DUF2577
UHGV-0045930_49	Structural annotation	PF10844, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0045930_50	PHROG	phrog_120	baseplate protein	tail
UHGV-0045930_50	UniRef90	UniRef90_UPI0006818E2D	NA	NA
UHGV-0045930_50	eggNOG-mapper	588581.Cpap_2571	NA	NA
UHGV-0045930_50	Pfam	PF10934	NA	DUF2634
UHGV-0045930_50	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0045930_50	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0045930_51	PHROG	phrog_1608	tail protein	tail
UHGV-0045930_51	UniRef90	UniRef90_UPI0011CC8465	baseplate J/gp47 family protein	NA
UHGV-0045930_51	eggNOG-mapper	588581.Cpap_2572	Baseplate J-like protein	NA
UHGV-0045930_51	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0045930_51	COG	COG3299	NA	NA
UHGV-0045930_51	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0045930_52	PHROG	phrog_521	tail protein	tail
UHGV-0045930_52	UniRef90	UniRef90_UPI0011CAFD12	NA	NA
UHGV-0045930_52	eggNOG-mapper	1195236.CTER_3988	NA	NA
UHGV-0045930_52	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0045930_52	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0045930_52	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0045930_53	PHROG	phrog_13589	NA	unknown function
UHGV-0045930_53	eggNOG-mapper	632245.CLP_1288	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0045930_53	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0045930_54	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0045930_54	UniRef90	UniRef90_UPI0001F01DD3	GDSL-type esterase/lipase family protein	NA
UHGV-0045930_54	eggNOG-mapper	411490.ANACAC_00509	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0045930_54	Pfam	PF00657	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL
UHGV-0045930_54	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0045930_55	eggNOG-mapper	411490.ANACAC_00509	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0045930_55	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0045930_56	UniRef90	UniRef90_A0A413FAM0	CTP synthase	NA
UHGV-0045930_56	eggNOG-mapper	411490.ANACAC_00705	NA	NA
UHGV-0045930_57	PHROG	phrog_18218	NA	unknown function
UHGV-0045930_57	UniRef90	UniRef90_A0A374AVT4	Ribonuclease	NA
UHGV-0045930_57	eggNOG-mapper	411459.RUMOBE_00910	NA	NA
UHGV-0045930_57	Structural annotation	PF06946	NA	NA
UHGV-0045930_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0045930_58	PHROG	phrog_670	endolysin	lysis
UHGV-0045930_58	UniRef90	UniRef90_UPI0001F01DD6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0045930_58	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-0045930_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0045930_58	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0045930_58	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-0045930_59	PHROG	phrog_13890	NA	unknown function
UHGV-0045930_59	UniRef90	UniRef90_UPI000B499598	Arc family DNA-binding protein	NA
UHGV-0045930_59	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA