UHGV-0045957

Genome information

vOTU vOTU-032029

Genome length 30,862 bps

CDS count 49

Completeness 80.44% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0045957
vOTU ID	vOTU-032029
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2657
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.4
Jumbo phage	No

Genome content
Genome length	30,862 bps
GC content	50.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.98%
Average CDS length	575.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0045957_1	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0045957_1	PHROG	phrog_7244	integrase	integration and excision
UHGV-0045957_1	UniRef90	UniRef90_A0A7U8VE05	Prophage lambda integrase	NA
UHGV-0045957_1	eggNOG-mapper	199310.c1519	Belongs to the 'phage' integrase family	NA
UHGV-0045957_1	Pfam	PF09003	Bacteriophage lambda integrase, Arm DNA-binding domain	Arm-DNA-bind_1
UHGV-0045957_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0045957_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0045957_1	Structural annotation	PF00589, PF09003, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0045957_2	PHROG	phrog_629	excisionase	integration and excision
UHGV-0045957_2	UniRef90	UniRef90_A0A1X9TPI7	Excisionase	NA
UHGV-0045957_2	eggNOG-mapper	362663.ECP_1136	DNA recombination	NA
UHGV-0045957_2	Pfam	PF07825	Excisionase-like protein	Exc
UHGV-0045957_2	Structural annotation	PF07825	NA	NA
UHGV-0045957_3	PHROG	phrog_24004	NA	unknown function
UHGV-0045957_3	UniRef90	UniRef90_UPI0010EE5FD0	NA	NA
UHGV-0045957_3	eggNOG-mapper	155864.EDL933_3275	NA	NA
UHGV-0045957_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0045957_4	PHROG	phrog_6847	NA	unknown function
UHGV-0045957_4	UniRef90	UniRef90_UPI001F4CB6C8	NA	NA
UHGV-0045957_4	eggNOG-mapper	1168549.I6R0R2_9CAUD	NA	NA
UHGV-0045957_6	PHROG	phrog_1138	NA	unknown function
UHGV-0045957_6	UniRef90	UniRef90_UPI00051753EC	ead/Ea22-like family protein	NA
UHGV-0045957_6	eggNOG-mapper	10754.VEAD_BPP22	Ead/Ea22-like protein	NA
UHGV-0045957_7	PHROG	phrog_25957	NA	unknown function
UHGV-0045957_7	UniRef90	UniRef90_A0A1U8QWK2	Orf45 protein	NA
UHGV-0045957_8	PHROG	phrog_492	NA	unknown function
UHGV-0045957_8	eggNOG-mapper	571.MC52_01595	NA	NA
UHGV-0045957_9	PHROG	phrog_2936	NA	unknown function
UHGV-0045957_10	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0045957_10	PHROG	phrog_25613	NA	unknown function
UHGV-0045957_10	UniRef90	UniRef90_A0A8B1AT02	HTH_ParB domain-containing protein	NA
UHGV-0045957_10	eggNOG-mapper	573.JG24_10860	NA	NA
UHGV-0045957_10	Pfam	PF17762	HTH domain found in ParB protein	HTH_ParB
UHGV-0045957_10	Structural annotation	PF02195, PF08535, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0045957_11	PHROG	phrog_15091	NA	unknown function
UHGV-0045957_12	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0045957_12	PHROG	phrog_35195	NA	unknown function
UHGV-0045957_12	UniRef90	UniRef90_A0A1X9TPA4	Helix-turn-helix transcriptional regulator	NA
UHGV-0045957_12	eggNOG-mapper	175950.Q8HAA0_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-0045957_12	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0045957_12	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0045957_12	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0045957_12	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0045957_13	UniRef90	UniRef90_A0A1X9TP12	Transcriptional regulator	NA
UHGV-0045957_13	eggNOG-mapper	90371.CY43_10735	Helix-turn-helix domain	NA
UHGV-0045957_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0045957_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0045957_13	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0045957_14	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-0045957_14	eggNOG-mapper	399742.Ent638_2618	NA	NA
UHGV-0045957_14	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0045957_14	NCBIFam	NF041471.1	YmfL family putative regulatory protein	NA
UHGV-0045957_14	Structural annotation	PF06892, NF041471	NA	NA
UHGV-0045957_15	PHROG	phrog_391	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0045957_15	UniRef90	UniRef90_A0A379S5Y2	Replication protein O	NA
UHGV-0045957_15	eggNOG-mapper	66284.S5FM81_BPSF2	DNA replication	NA
UHGV-0045957_15	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0045957_15	Structural annotation	PF03428, MF_01819, TIGR01610, COG5529	NA	NA
UHGV-0045957_16	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-0045957_16	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0045957_16	UniRef90	UniRef90_W9BGJ5	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0045957_16	eggNOG-mapper	371042.NG99_23650	Site-specific DNA-methyltransferase (Adenine-specific)	NA
UHGV-0045957_16	PADLOC	oMTase_00018	orphan methyltransferase	RM
UHGV-0045957_16	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0045957_16	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0045957_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0045957_16	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0045957_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0045957_17	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-0045957_17	UniRef90	UniRef90_A0A486QS57	Crossover junction endodeoxyribonuclease rusA	NA
UHGV-0045957_17	eggNOG-mapper	1166130.H650_06940	Endodeoxyribonuclease RusA	NA
UHGV-0045957_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0045957_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0045957_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0045957_18	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045957_18	UniRef90	UniRef90_A0A1X9TPI1	NA	NA
UHGV-0045957_18	eggNOG-mapper	35703.DQ02_24170	NA	NA
UHGV-0045957_18	Pfam	PF06147	NA	DUF968
UHGV-0045957_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0045957_18	Structural annotation	PF06147	NA	NA
UHGV-0045957_19	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0045957_19	UniRef90	UniRef90_A0A379WW52	Putative bacteriophage protein	NA
UHGV-0045957_19	eggNOG-mapper	90371.CY43_13955	NA	NA
UHGV-0045957_19	Pfam	PF06576	NA	DUF1133
UHGV-0045957_20	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-0045957_20	UniRef90	UniRef90_A0A0J2GSI8	NA	NA
UHGV-0045957_20	eggNOG-mapper	90371.CY43_13955	NA	NA
UHGV-0045957_20	Pfam	PF06576	NA	DUF1133
UHGV-0045957_22	PHROG	phrog_198	holin	lysis
UHGV-0045957_22	UniRef90	UniRef90_A0A0J2A5L5	Membrane protein	NA
UHGV-0045957_22	eggNOG-mapper	754331.AEME01000001_gene4288	Putative phage holin	NA
UHGV-0045957_22	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0045957_22	Structural annotation	PF16931	NA	NA
UHGV-0045957_23	PHROG	phrog_217	holin	lysis
UHGV-0045957_23	UniRef90	UniRef90_A0A2L0KQV5	Membrane protein	NA
UHGV-0045957_23	eggNOG-mapper	469595.CSAG_00950	Putative 3TM holin, Phage_holin_3	NA
UHGV-0045957_23	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0045957_24	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0045957_24	PHROG	phrog_181	endolysin	lysis
UHGV-0045957_24	UniRef90	UniRef90_A0A565EXJ4	Glyco_hydro_19_cat domain-containing protein	NA
UHGV-0045957_24	eggNOG-mapper	573.JG24_10935	PFAM glycoside hydrolase family 19	NA
UHGV-0045957_24	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0045957_24	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0045957_24	Structural annotation	PF00182, TIGR02282, COG3179	NA	NA
UHGV-0045957_25	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0045957_25	eggNOG-mapper	573.JG24_10940	NA	NA
UHGV-0045957_26	PHROG	phrog_26238	NA	unknown function
UHGV-0045957_26	eggNOG-mapper	523791.Kkor_1250	Tetratricopeptide repeat	NA
UHGV-0045957_26	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0045957_27	PHROG	phrog_26297	NA	unknown function
UHGV-0045957_27	eggNOG-mapper	1205680.CAKO01000025_gene4618	NA	NA
UHGV-0045957_28	eggNOG-mapper	35703.DQ02_24225	NA	NA
UHGV-0045957_28	Structural annotation	PF11730	NA	NA
UHGV-0045957_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0045957_29	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0045957_29	UniRef90	UniRef90_A0A377Z6P6	DNAse	NA
UHGV-0045957_29	eggNOG-mapper	640513.Entas_3084	HNH endonuclease	NA
UHGV-0045957_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0045957_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0045957_29	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0045957_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0045957_30	UniRef90	UniRef90_A0A377ZT15	Terminase	NA
UHGV-0045957_30	eggNOG-mapper	1410619.SRDD_27410	Phage terminase, small subunit	NA
UHGV-0045957_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0045957_30	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0045957_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0045957_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0045957_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0045957_31	UniRef90	UniRef90_A0A3G2FCW0	Terminase large subunit	NA
UHGV-0045957_31	eggNOG-mapper	741091.Rahaq_1806	terminase	NA
UHGV-0045957_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0045957_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0045957_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0045957_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0045957_32	PHROG	phrog_7105	NA	unknown function
UHGV-0045957_32	UniRef90	UniRef90_A0A486H341	Membrane protein	NA
UHGV-0045957_32	eggNOG-mapper	520999.PROVALCAL_02013	NA	NA
UHGV-0045957_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0045957_33	UniRef90	UniRef90_A0A7I7A5G0	Portal protein	NA
UHGV-0045957_33	eggNOG-mapper	399742.Ent638_2600	TIGRFAM Phage portal protein, HK97	NA
UHGV-0045957_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0045957_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0045957_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0045957_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0045957_34	KOfam	K06904	NA	NA
UHGV-0045957_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0045957_34	UniRef90	UniRef90_A0A133LFS7	Phage prohead protease, HK97 family	NA
UHGV-0045957_34	eggNOG-mapper	667121.ET1_08_01070	Prohead protease	NA
UHGV-0045957_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0045957_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0045957_34	COG	COG3740	Phage head maturation protease	NA
UHGV-0045957_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0045957_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0045957_35	UniRef90	UniRef90_A0A133LFJ6	Phage major capsid protein, HK97 family	NA
UHGV-0045957_35	eggNOG-mapper	399742.Ent638_2598	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0045957_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0045957_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0045957_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0045957_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0045957_36	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0045957_36	UniRef90	UniRef90_A0A3S4K328	Phage protein DNA packaging protein	NA
UHGV-0045957_36	eggNOG-mapper	1332071.L581_3141	Phage gp6-like head-tail connector protein	NA
UHGV-0045957_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0045957_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0045957_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0045957_37	PHROG	phrog_2612	NA	unknown function
UHGV-0045957_37	UniRef90	UniRef90_UPI001CCBEFAE	HU family DNA-binding protein	NA
UHGV-0045957_37	eggNOG-mapper	1147143.K7P6F3_9CAUD	NA	NA
UHGV-0045957_38	PHROG	phrog_25	head closure Hc1	connector
UHGV-0045957_38	UniRef90	UniRef90_A0A7I0E463	Head-tail adaptor protein	NA
UHGV-0045957_38	eggNOG-mapper	1147150.K7PH08_9CAUD	Phage head-tail joining protein	NA
UHGV-0045957_38	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0045957_38	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0045957_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0045957_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0045957_39	UniRef90	UniRef90_UPI001F326D52	HK97 gp10 family phage protein	NA
UHGV-0045957_39	eggNOG-mapper	1147150.K7PM60_9CAUD	exonuclease activity	NA
UHGV-0045957_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0045957_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0045957_39	Structural annotation	TIGR01725	NA	NA
UHGV-0045957_40	PHROG	phrog_78	tail terminator	connector
UHGV-0045957_40	UniRef90	UniRef90_A0A1X9TNY6	NA	NA
UHGV-0045957_40	eggNOG-mapper	10742.Q9MCV0_BPHK0	NA	NA
UHGV-0045957_40	Pfam	PF11367	NA	DUF3168
UHGV-0045957_40	Structural annotation	PF11367	NA	NA
UHGV-0045957_41	PHROG	phrog_158	major tail protein	tail
UHGV-0045957_41	UniRef90	UniRef90_A0A8F4G6C2	Phage tail protein	NA
UHGV-0045957_41	eggNOG-mapper	932213.SPM24T3_24191	Phage tail tube, TTP, lambda-like	NA
UHGV-0045957_41	Pfam	PF16460	Phage tail tube, TTP, lambda-like	Phage_TTP_11
UHGV-0045957_41	Structural annotation	PF16460, TIGR02241, COG5437	NA	NA
UHGV-0045957_42	PHROG	phrog_1749	tail assembly chaperone	tail
UHGV-0045957_42	UniRef90	UniRef90_UPI0005165ADE	phage tail assembly chaperone family protein, TAC	NA
UHGV-0045957_42	eggNOG-mapper	640513.Entas_3070	Phage tail assembly chaperone, TAC	NA
UHGV-0045957_42	Pfam	PF16459	Phage tail assembly chaperone, TAC	Phage_TAC_13
UHGV-0045957_42	Structural annotation	PF16459	NA	NA
UHGV-0045957_43	PHROG	phrog_337	tail protein	tail
UHGV-0045957_43	UniRef90	UniRef90_A0A8A7GDE6	Phage tail protein	NA
UHGV-0045957_43	eggNOG-mapper	932213.SPM24T3_24201	NA	NA
UHGV-0045957_44	PHROG	phrog_2320	NA	unknown function
UHGV-0045957_44	eggNOG-mapper	371042.NG99_26645	NA	NA
UHGV-0045957_45	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-0045957_45	UniRef90	UniRef90_A0A8A9WZS7	Phage tail tape measure protein	NA
UHGV-0045957_45	eggNOG-mapper	932213.SPM24T3_24002	lytic transglycosylase activity	NA
UHGV-0045957_45	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0045957_45	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0045957_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0045957_46	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0045957_46	UniRef90	UniRef90_A0A377Z7R0	Alkanesulfonate ABC transporter permease	NA
UHGV-0045957_46	eggNOG-mapper	1028307.EAE_21020	NA	NA
UHGV-0045957_46	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0045957_47	PHROG	phrog_396	minor tail protein	tail
UHGV-0045957_47	UniRef90	UniRef90_A0A377ZDS5	ArsR family transcriptional regulator	NA
UHGV-0045957_47	eggNOG-mapper	371042.NG99_23805	NA	NA
UHGV-0045957_47	Pfam	PF08875	NA	DUF1833
UHGV-0045957_47	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0045957_48	PHROG	phrog_329	minor tail protein	tail
UHGV-0045957_48	UniRef90	UniRef90_A0A330XBC2	Nitrite transporter	NA
UHGV-0045957_48	eggNOG-mapper	1225184.ALXE01000018_gene3828	NA	NA
UHGV-0045957_48	Structural annotation	TIGR02219	NA	NA
UHGV-0045957_49	PHROG	phrog_469	tail protein	tail
UHGV-0045957_49	UniRef90	UniRef90_A0A443WQ78	Kinase	NA
UHGV-0045957_49	eggNOG-mapper	571.MC52_01330	cellulase activity	NA
UHGV-0045957_49	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0045957_49	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0045957_49	Structural annotation	PF13550, NF040662, TIGR01683, COG2104	NA	NA