UHGV-0046023

Genome information

Genome length 59,118 bps

CDS count 94

Completeness 100.00% (complete)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046023
vOTU ID	vOTU-004428
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_22761
BioSample	SAMEA2042632
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.84
Jumbo phage	No

Genome content
Genome length	59,118 bps
GC content	48.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	94
CDS density	86.90%
Average CDS length	548.62 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046023_1	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0046023_1	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0046023_1	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0046023_1	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0046023_3	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0046023_3	PHROG	phrog_200	lipoprotein	other
UHGV-0046023_3	UniRef90	UniRef90_D4KCF4	Membrane protease subunits, stomatin/prohibitin homologs	NA
UHGV-0046023_3	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-0046023_3	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0046023_3	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0046023_3	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0046023_4	Structural annotation	PF16677	NA	NA
UHGV-0046023_10	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0046023_12	PHROG	phrog_2715	NA	unknown function
UHGV-0046023_12	eggNOG-mapper	718252.FP2_16370	NA	NA
UHGV-0046023_12	Structural annotation	PF18406	NA	NA
UHGV-0046023_13	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0046023_13	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0046023_13	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0046023_13	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0046023_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0046023_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0046023_16	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0046023_16	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0046023_16	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0046023_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0046023_16	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0046023_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0046023_16	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0046023_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0046023_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0046023_17	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0046023_17	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0046023_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0046023_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0046023_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0046023_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0046023_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0046023_18	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0046023_18	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0046023_18	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0046023_18	Pfam	PF04404	ERF superfamily	ERF
UHGV-0046023_18	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0046023_20	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0046023_20	eggNOG-mapper	1123399.AQVE01000002_gene2370	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0046023_20	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0046023_20	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0046023_20	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0046023_21	Structural annotation	PF14143	NA	NA
UHGV-0046023_24	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0046023_24	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0046023_27	Structural annotation	PF10922	NA	NA
UHGV-0046023_28	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0046023_28	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0046023_28	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0046023_28	eggNOG-mapper	1449343.JQLQ01000002_gene1368	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0046023_28	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0046023_28	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0046023_28	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0046023_28	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0046023_28	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0046023_29	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0046023_29	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0046023_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046023_29	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0046023_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0046023_30	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0046023_30	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0046023_30	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0046023_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0046023_31	Structural annotation	PF16311, NF038219	NA	NA
UHGV-0046023_35	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0046023_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046023_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0046023_35	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0046023_36	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0046023_36	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0046023_36	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0046023_36	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0046023_36	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0046023_36	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0046023_36	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0046023_37	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0046023_37	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0046023_37	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0046023_37	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0046023_37	Pfam	PF13614	AAA domain	AAA_31
UHGV-0046023_37	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0046023_37	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0046023_38	Structural annotation	PF07878	NA	NA
UHGV-0046023_39	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-0046023_39	PHROG	phrog_3757	NA	unknown function
UHGV-0046023_39	UniRef90	UniRef90_A0A4Z0Y6M2	ATP-dependent zinc metalloprotease FtsH 3	NA
UHGV-0046023_39	eggNOG-mapper	768710.DesyoDRAFT_1087	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0046023_39	PADLOC	IetA_00002	NA	ietAS
UHGV-0046023_39	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0046023_39	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0046023_39	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-0046023_40	eggNOG-mapper	1235802.C823_04889	NA	NA
UHGV-0046023_41	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0046023_41	UniRef90	UniRef90_UPI00096AC6A5	ORF6C domain-containing protein	NA
UHGV-0046023_41	eggNOG-mapper	742738.HMPREF9460_02498	BRO family, N-terminal domain	NA
UHGV-0046023_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0046023_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0046023_41	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0046023_42	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0046023_43	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0046023_44	PHROG	phrog_16490	NA	unknown function
UHGV-0046023_44	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0046023_50	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0046023_50	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0046023_50	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0046023_50	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0046023_50	Structural annotation	PF10651	NA	NA
UHGV-0046023_51	PHROG	phrog_15303	NA	unknown function
UHGV-0046023_53	KOfam	K07273	acm; lysozyme	NA
UHGV-0046023_53	PHROG	phrog_291	endolysin	lysis
UHGV-0046023_53	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0046023_53	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0046023_53	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0046023_53	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0046023_53	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0046023_54	PHROG	phrog_2310	NA	unknown function
UHGV-0046023_56	PHROG	phrog_18725	NA	unknown function
UHGV-0046023_56	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0046023_57	PHROG	phrog_13879	NA	unknown function
UHGV-0046023_57	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0046023_57	Pfam	PF19789	NA	DUF6273
UHGV-0046023_57	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0046023_58	PHROG	phrog_1194	NA	unknown function
UHGV-0046023_58	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0046023_58	Pfam	PF20458	NA	DUF6711
UHGV-0046023_58	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0046023_59	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0046023_59	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0046023_59	Pfam	PF05746	DALR anticodon binding domain	DALR_1
UHGV-0046023_59	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0046023_60	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0046023_61	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0046023_61	Pfam	PF16478	NA	DUF5055
UHGV-0046023_61	Structural annotation	PF16478	NA	NA
UHGV-0046023_62	PHROG	phrog_158	major tail protein	tail
UHGV-0046023_62	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0046023_62	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0046023_62	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0046023_63	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0046023_64	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0046023_65	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0046023_66	UniRef90	UniRef90_A0A7C7ERG0	DNA-packaging protein	NA
UHGV-0046023_66	Structural annotation	TIGR01560	NA	NA
UHGV-0046023_67	PHROG	phrog_29	major head protein	head and packaging
UHGV-0046023_67	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0046023_67	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0046023_67	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0046023_67	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0046023_68	PHROG	phrog_909	major head protein	head and packaging
UHGV-0046023_70	PHROG	phrog_64	portal protein	head and packaging
UHGV-0046023_70	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0046023_70	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0046023_70	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0046023_70	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0046023_72	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0046023_72	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0046023_72	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0046023_72	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0046023_72	COG	COG5410	NA	NA
UHGV-0046023_72	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0046023_73	PHROG	phrog_10678	NA	unknown function
UHGV-0046023_75	Pfam	PF04448	NA	DUF551
UHGV-0046023_76	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0046023_76	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0046023_76	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0046023_76	eggNOG-mapper	1410633.JHWR01000012_gene95	Resolvase, N terminal domain	NA
UHGV-0046023_76	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0046023_76	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0046023_76	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0046023_77	Structural annotation	PF20075	NA	NA
UHGV-0046023_79	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0046023_80	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0046023_80	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0046023_80	UniRef90	UniRef90_A0A8D4D1X2	Bro-N domain-containing protein	NA
UHGV-0046023_80	eggNOG-mapper	552398.HMPREF0866_02978	BRO family, N-terminal domain	NA
UHGV-0046023_80	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0046023_80	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0046023_80	COG	COG3617	Prophage antirepressor	NA
UHGV-0046023_80	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0046023_81	PHROG	phrog_14275	NA	unknown function
UHGV-0046023_81	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0046023_81	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0046023_86	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046023_86	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0046023_89	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0046023_89	UniRef90	UniRef90_C3X1Q1	RepA_N domain-containing protein	NA
UHGV-0046023_89	eggNOG-mapper	556268.OFAG_00290	DNA-binding transcription factor activity	NA
UHGV-0046023_89	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0046023_89	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-0046023_89	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-0046023_90	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0046023_90	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0046023_90	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0046023_90	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0046023_90	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0046023_90	COG	COG0305	Replicative DNA helicase	NA
UHGV-0046023_90	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0046023_91	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0046023_91	Pfam	PF19808	NA	DUF6291
UHGV-0046023_91	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0046023_91	Structural annotation	PF19808	NA	NA
UHGV-0046023_92	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0046023_92	eggNOG-mapper	269482.Bcep1808_1151	NA	NA
UHGV-0046023_92	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0046023_92	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0046023_92	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0046023_92	Structural annotation	PF14354, TIGR03655	NA	NA