UHGV-0046024

Genome information

vOTU vOTU-020396

Genome length 28,021 bps

CDS count 34

Completeness 70.46% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046024
vOTU ID	vOTU-020396
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4300
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.16
Jumbo phage	No

Genome content
Genome length	28,021 bps
GC content	38.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	86.01%
Average CDS length	712.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046024_2	KOfam	K03704	cspA; cold shock protein	NA
UHGV-0046024_2	PHROG	phrog_729	cold shock protein	other
UHGV-0046024_2	UniRef90	UniRef90_R2MC62	Cold shock protein 2	NA
UHGV-0046024_2	eggNOG-mapper	1104325.M7W_2025	Cold shock	NA
UHGV-0046024_2	PADLOC	retron_type_V_csd_cluster85_1	NA	Retron
UHGV-0046024_2	Pfam	PF00313	'Cold-shock' DNA-binding domain	CSD
UHGV-0046024_2	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0046024_2	Structural annotation	PF00313, NF007062, COG1278	NA	NA
UHGV-0046024_3	PHROG	phrog_30113	NA	unknown function
UHGV-0046024_3	UniRef90	UniRef90_UPI00033050BC	NA	NA
UHGV-0046024_3	eggNOG-mapper	1158604.I591_00418	NA	NA
UHGV-0046024_3	Pfam	PF12686	NA	DUF3800
UHGV-0046024_3	Structural annotation	PF01351, MF_00052_A, TIGR00729, COG1039	NA	NA
UHGV-0046024_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0046024_4	PHROG	phrog_2338	endolysin	lysis
UHGV-0046024_4	UniRef90	UniRef90_A0A377MS14	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046024_4	eggNOG-mapper	1104325.M7W_2034	Ami_2	NA
UHGV-0046024_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0046024_4	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0046024_4	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0046024_5	PHROG	phrog_881	holin	lysis
UHGV-0046024_5	UniRef90	UniRef90_A0A0V7Y5Y4	Holin	NA
UHGV-0046024_5	eggNOG-mapper	565664.EFXG_03970	Putative phage holin Dp-1	NA
UHGV-0046024_5	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0046024_5	Structural annotation	PF16938	NA	NA
UHGV-0046024_6	PHROG	phrog_1009	NA	unknown function
UHGV-0046024_6	eggNOG-mapper	565664.EFXG_03971	NA	NA
UHGV-0046024_7	PHROG	phrog_1382	NA	unknown function
UHGV-0046024_7	eggNOG-mapper	1140002.I570_03995	NA	NA
UHGV-0046024_7	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0046024_7	Structural annotation	NF040910	NA	NA
UHGV-0046024_8	PHROG	phrog_1382	NA	unknown function
UHGV-0046024_8	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0046024_8	Structural annotation	NF040910	NA	NA
UHGV-0046024_9	PHROG	phrog_1536	NA	unknown function
UHGV-0046024_9	UniRef90	UniRef90_S4DEY7	HsdM_N domain-containing protein	NA
UHGV-0046024_9	eggNOG-mapper	1260356.D920_01753	NA	NA
UHGV-0046024_10	PHROG	phrog_10054	NA	unknown function
UHGV-0046024_10	UniRef90	UniRef90_UPI00071BFEDE	BppU family phage baseplate upper protein	NA
UHGV-0046024_10	eggNOG-mapper	1158604.I591_00541	InterPro IPR018913 Domain of	NA
UHGV-0046024_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0046024_11	PHROG	phrog_11663	minor head protein	head and packaging
UHGV-0046024_11	UniRef90	UniRef90_C9BWV7	Predicted protein	NA
UHGV-0046024_11	eggNOG-mapper	565664.EFXG_01758	NA	NA
UHGV-0046024_12	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0046024_12	PHROG	phrog_7158	NA	unknown function
UHGV-0046024_12	UniRef90	UniRef90_C9BWV6	Predicted protein	NA
UHGV-0046024_12	eggNOG-mapper	565664.EFXG_01759	NA	NA
UHGV-0046024_12	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0046024_12	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0046024_12	Structural annotation	PF10651, PF14582, MF_00905, NF008359, COG1409	NA	NA
UHGV-0046024_13	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0046024_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0046024_13	UniRef90	UniRef90_UPI001020A53A	phage tail tip lysozyme	NA
UHGV-0046024_13	eggNOG-mapper	565664.EFXG_01178	heme binding	NA
UHGV-0046024_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0046024_13	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0046024_13	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0046024_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0046024_13	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0046024_13	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-0046024_14	PHROG	phrog_5163	minor tail protein	tail
UHGV-0046024_14	UniRef90	UniRef90_A0A0M2B121	Phage tail component protein	NA
UHGV-0046024_14	eggNOG-mapper	565664.EFXG_01177	Phage tail protein	NA
UHGV-0046024_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0046024_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0046024_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0046024_14	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0046024_15	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0046024_15	UniRef90	UniRef90_A0A829A1W7	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0046024_15	eggNOG-mapper	565664.EFXG_01176	Phage tail tape measure protein, TP901 family	NA
UHGV-0046024_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0046024_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0046024_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0046024_15	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0046024_16	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0046024_16	UniRef90	UniRef90_A0A7U8IL94	NA	NA
UHGV-0046024_16	eggNOG-mapper	565664.EFXG_01175	NA	NA
UHGV-0046024_17	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0046024_17	UniRef90	UniRef90_UPI001A8DA6DF	tail assembly chaperone	NA
UHGV-0046024_17	eggNOG-mapper	565664.EFXG_01174	Phage tail assembly chaperone protein, TAC	NA
UHGV-0046024_17	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0046024_17	Structural annotation	PF12363	NA	NA
UHGV-0046024_18	PHROG	phrog_238	major tail protein	tail
UHGV-0046024_18	UniRef90	UniRef90_A0A0M2B0N7	Phage major tail protein, TP901-1 family	NA
UHGV-0046024_18	eggNOG-mapper	565664.EFXG_01173	Phage tail tube protein	NA
UHGV-0046024_18	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0046024_18	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0046024_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0046024_19	PHROG	phrog_176	tail terminator	connector
UHGV-0046024_19	UniRef90	UniRef90_UPI000A339243	phage capsid protein	NA
UHGV-0046024_19	eggNOG-mapper	565664.EFXG_01172	NA	NA
UHGV-0046024_19	Structural annotation	PF11367	NA	NA
UHGV-0046024_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0046024_20	UniRef90	UniRef90_A0A132P7U7	HK97 gp10 family phage protein	NA
UHGV-0046024_20	eggNOG-mapper	565664.EFXG_01171	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0046024_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0046024_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0046024_20	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0046024_21	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0046024_21	UniRef90	UniRef90_A0A0V8CX26	NA	NA
UHGV-0046024_21	eggNOG-mapper	565664.EFXG_01170	NA	NA
UHGV-0046024_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0046024_22	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0046024_22	UniRef90	UniRef90_UPI001921F8BF	phage head-tail connector protein	NA
UHGV-0046024_22	eggNOG-mapper	565664.EFXG_01169	Phage gp6-like head-tail connector protein	NA
UHGV-0046024_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0046024_22	Structural annotation	PF05135	NA	NA
UHGV-0046024_23	PHROG	phrog_29	major head protein	head and packaging
UHGV-0046024_23	UniRef90	UniRef90_A0A7U8FUB5	NA	NA
UHGV-0046024_23	eggNOG-mapper	565664.EFXG_01167	Phage major capsid protein E	NA
UHGV-0046024_23	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0046024_23	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0046024_24	PHROG	phrog_909	major head protein	head and packaging
UHGV-0046024_24	UniRef90	UniRef90_A0A7U8FVR7	NA	NA
UHGV-0046024_24	eggNOG-mapper	565664.EFXG_01166	NA	NA
UHGV-0046024_25	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0046024_25	UniRef90	UniRef90_A0A7Z0M130	NA	NA
UHGV-0046024_25	eggNOG-mapper	565664.EFXG_01165	NA	NA
UHGV-0046024_25	Pfam	PF14265	NA	DUF4355
UHGV-0046024_25	Structural annotation	PF14265	NA	NA
UHGV-0046024_26	Structural annotation	PF02100	NA	NA
UHGV-0046024_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0046024_28	UniRef90	UniRef90_A0A7T9W8C3	Minor capsid protein	NA
UHGV-0046024_28	eggNOG-mapper	565664.EFXG_01162	Phage Mu protein F like protein	NA
UHGV-0046024_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0046024_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0046024_28	COG	COG2369	NA	NA
UHGV-0046024_28	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0046024_29	PHROG	phrog_8208	NA	unknown function
UHGV-0046024_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0046024_30	UniRef90	UniRef90_A0A7U8IK40	Phage portal protein	NA
UHGV-0046024_30	eggNOG-mapper	565664.EFXG_01159	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0046024_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0046024_30	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0046024_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0046024_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0046024_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0046024_31	UniRef90	UniRef90_A0A022N9V5	Terminase	NA
UHGV-0046024_31	eggNOG-mapper	565664.EFXG_01158	Terminase RNAseH like domain	NA
UHGV-0046024_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0046024_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0046024_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0046024_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0046024_31	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0046024_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0046024_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0046024_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0046024_32	UniRef90	UniRef90_J6Z1D2	Putative terminase small subunit	NA
UHGV-0046024_32	eggNOG-mapper	565664.EFXG_01157	Terminase small subunit	NA
UHGV-0046024_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0046024_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0046024_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0046024_33	PHROG	phrog_5859	NA	unknown function
UHGV-0046024_33	eggNOG-mapper	1201292.DR75_1513	NA	NA
UHGV-0046024_34	PHROG	phrog_918	NA	unknown function
UHGV-0046024_34	UniRef90	UniRef90_UPI0013D7DEC2	NA	NA
UHGV-0046024_34	eggNOG-mapper	1260356.D920_00086	NA	NA
UHGV-0046024_34	Pfam	PF19791	NA	DUF6275
UHGV-0046024_34	Structural annotation	PF19791	NA	NA