UHGV-0046026

Genome information

Genome length 23,261 bps

CDS count 29

Completeness 59.93% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046026
vOTU ID	vOTU-038081
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4295
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.98
Jumbo phage	No

Genome content
Genome length	23,261 bps
GC content	45.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	90.46%
Average CDS length	729.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046026_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0046026_1	UniRef90	UniRef90_A0A3R6R6P2	RNA polymerase subunit sigma-70	NA
UHGV-0046026_1	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0046026_1	Structural annotation	PF02996	NA	NA
UHGV-0046026_2	eggNOG-mapper	1473546.CH76_10290	NYN domain	NA
UHGV-0046026_2	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0046026_3	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0046026_3	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0046026_3	UniRef90	UniRef90_A0A3R6M7Q6	Terminase small subunit	NA
UHGV-0046026_3	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0046026_3	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0046026_3	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0046026_3	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0046026_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0046026_4	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0046026_4	UniRef90	UniRef90_A0A416KE31	Terminase	NA
UHGV-0046026_4	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0046026_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0046026_4	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0046026_5	PHROG	phrog_533	portal protein	head and packaging
UHGV-0046026_5	UniRef90	UniRef90_A0A3R6LPA5	Capsid protein	NA
UHGV-0046026_5	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0046026_5	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0046026_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0046026_7	UniRef90	UniRef90_UPI0009303339	putative zinc-binding metallopeptidase	NA
UHGV-0046026_7	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0046026_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0046026_7	COG	COG2369	NA	NA
UHGV-0046026_8	Structural annotation	PF11344	NA	NA
UHGV-0046026_9	PHROG	phrog_13199	NA	unknown function
UHGV-0046026_9	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0046026_10	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0046026_10	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0046026_11	PHROG	phrog_422	major head protein	head and packaging
UHGV-0046026_11	UniRef90	UniRef90_A0A3R6PT58	Capsid protein	NA
UHGV-0046026_11	eggNOG-mapper	394503.Ccel_3291	NA	NA
UHGV-0046026_11	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0046026_12	PHROG	phrog_1378	NA	unknown function
UHGV-0046026_12	UniRef90	UniRef90_A0A0B3VH35	HALZ domain-containing protein	NA
UHGV-0046026_12	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0046026_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0046026_13	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0046026_14	PHROG	phrog_8710	NA	unknown function
UHGV-0046026_14	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0046026_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0046026_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0046026_15	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0046026_16	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0046026_16	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0046026_16	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0046026_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0046026_16	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0046026_17	PHROG	phrog_820	major tail protein	tail
UHGV-0046026_17	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0046026_17	COG	COG5492	NA	NA
UHGV-0046026_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0046026_18	PHROG	phrog_8300	NA	unknown function
UHGV-0046026_18	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0046026_18	Structural annotation	PF06854	NA	NA
UHGV-0046026_19	PHROG	phrog_8355	NA	unknown function
UHGV-0046026_19	UniRef90	UniRef90_UPI0011579C35	Gp15 family bacteriophage protein	NA
UHGV-0046026_19	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0046026_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0046026_19	Structural annotation	PF06854	NA	NA
UHGV-0046026_21	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0046026_21	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0046026_21	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0046026_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0046026_21	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0046026_22	PHROG	phrog_1194	NA	unknown function
UHGV-0046026_22	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0046026_22	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0046026_23	PHROG	phrog_13879	NA	unknown function
UHGV-0046026_23	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0046026_23	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0046026_24	PHROG	phrog_18725	NA	unknown function
UHGV-0046026_24	eggNOG-mapper	742740.HMPREF9474_03517	NA	NA
UHGV-0046026_25	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0046026_27	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0046026_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0046026_27	UniRef90	UniRef90_A0A3R6TX05	Tyr recombinase domain-containing protein	NA
UHGV-0046026_27	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0046026_27	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0046026_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0046026_27	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0046026_27	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0046026_28	PHROG	phrog_199	holin	lysis
UHGV-0046026_28	UniRef90	UniRef90_A0A373BKA3	Holin	NA
UHGV-0046026_28	eggNOG-mapper	411461.DORFOR_01186	Bacteriophage holin family	NA
UHGV-0046026_28	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0046026_28	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0046026_28	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0046026_28	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0046026_29	PHROG	phrog_14030	NA	unknown function
UHGV-0046026_29	UniRef90	UniRef90_A0A417IER1	PG_binding_1 domain-containing protein	NA
UHGV-0046026_29	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0046026_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0046026_29	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0046026_29	Structural annotation	PF01471, NF038080, COG3409	NA	NA