UHGV-0046066

Genome information

vOTU vOTU-019177

Genome length 41,893 bps

CDS count 71

Completeness 80.85% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046066
vOTU ID	vOTU-019177
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_2106
BioSample	SAMEA728594
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.54
Jumbo phage	No

Genome content
Genome length	41,893 bps
GC content	53.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	92.62%
Average CDS length	550.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046066_1	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0046066_1	UniRef90	UniRef90_UPI0005B25BA0	host-nuclease inhibitor Gam family protein	NA
UHGV-0046066_1	eggNOG-mapper	697281.Mahau_0089	Bacteriophage Mu Gam like protein	NA
UHGV-0046066_1	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0046066_1	Structural annotation	PF07352	NA	NA
UHGV-0046066_2	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0046066_2	UniRef90	UniRef90_A0A7U9PED5	ERF superfamily protein	NA
UHGV-0046066_2	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0046066_2	Pfam	PF04404	ERF superfamily	ERF
UHGV-0046066_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0046066_2	Structural annotation	PF04404, TIGR00607, COG4319	NA	NA
UHGV-0046066_4	PHROG	phrog_6721	NA	unknown function
UHGV-0046066_4	eggNOG-mapper	679192.HMPREF9013_1123	NA	NA
UHGV-0046066_4	Structural annotation	MF_01408, TIGR02170	NA	NA
UHGV-0046066_7	PHROG	phrog_398	NA	unknown function
UHGV-0046066_7	UniRef90	UniRef90_K1U9S1	NA	NA
UHGV-0046066_7	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0046066_7	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0046066_7	Structural annotation	PF16784	NA	NA
UHGV-0046066_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0046066_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0046066_8	UniRef90	UniRef90_K1U2S6	Single-strand DNA-binding protein	NA
UHGV-0046066_8	eggNOG-mapper	720554.Clocl_4133	Single-stranded DNA-binding protein	NA
UHGV-0046066_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0046066_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0046066_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0046066_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0046066_8	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0046066_9	UniRef90	UniRef90_K1TUR1	NA	NA
UHGV-0046066_9	Pfam	PF19808	NA	DUF6291
UHGV-0046066_9	Structural annotation	PF19808, COG3935	NA	NA
UHGV-0046066_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0046066_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0046066_10	UniRef90	UniRef90_K1UYR3	Replicative DNA helicase (Fragment)	NA
UHGV-0046066_10	eggNOG-mapper	395494.Galf_2031	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0046066_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0046066_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0046066_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0046066_11	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0046066_11	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0046066_11	UniRef90	UniRef90_K1RYG5	Prophage antirepressor	NA
UHGV-0046066_11	eggNOG-mapper	1437608.BBIA_0645	BRO family, N-terminal domain	NA
UHGV-0046066_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0046066_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0046066_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0046066_11	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0046066_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0046066_12	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0046066_14	Structural annotation	TIGR03655	NA	NA
UHGV-0046066_15	PHROG	phrog_5070	NA	unknown function
UHGV-0046066_15	UniRef90	UniRef90_UPI001898F13F	polymer-forming cytoskeletal protein	NA
UHGV-0046066_15	eggNOG-mapper	445972.ANACOL_01820	COG NOG06285 non supervised orthologous group	NA
UHGV-0046066_15	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0046066_15	Structural annotation	MF_01691, NF040481	NA	NA
UHGV-0046066_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0046066_17	UniRef90	UniRef90_UPI000AA279EE	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0046066_17	eggNOG-mapper	1291050.JAGE01000001_gene2907	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0046066_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0046066_17	Structural annotation	PF01507, MF_00064, NF002537, COG0175	NA	NA
UHGV-0046066_18	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0046066_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0046066_18	UniRef90	UniRef90_A0A6N9PTW9	Adenylyl-sulfate reductase	NA
UHGV-0046066_18	eggNOG-mapper	1256908.HMPREF0373_02094	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0046066_18	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0046066_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0046066_20	PHROG	phrog_824	NA	unknown function
UHGV-0046066_20	UniRef90	UniRef90_K1REM0	VRR-NUC domain protein	NA
UHGV-0046066_20	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0046066_20	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0046066_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0046066_22	eggNOG-mapper	903814.ELI_1292	NA	NA
UHGV-0046066_22	Structural annotation	PF04545, MF_00674, NF001072, COG1342	NA	NA
UHGV-0046066_25	Structural annotation	PF01402, NF008671, COG4226	NA	NA
UHGV-0046066_27	PHROG	phrog_25027	NA	unknown function
UHGV-0046066_27	UniRef90	UniRef90_K1SIJ4	ArdcN domain-containing protein	NA
UHGV-0046066_27	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0046066_27	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0046066_28	PHROG	phrog_21498	NA	unknown function
UHGV-0046066_28	UniRef90	UniRef90_UPI000CD87E9A	chromosome partitioning protein ParB	NA
UHGV-0046066_28	eggNOG-mapper	445970.ALIPUT_01611	DNA binding	NA
UHGV-0046066_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0046066_29	PHROG	phrog_21498	NA	unknown function
UHGV-0046066_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0046066_30	Structural annotation	PF17941, MF_01917, NF010490, COG3886	NA	NA
UHGV-0046066_33	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0046066_33	UniRef90	UniRef90_K1TUM3	Terminase large subunit (Fragment)	NA
UHGV-0046066_33	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0046066_33	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0046066_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0046066_34	UniRef90	UniRef90_K1SG85	Phage portal protein, SPP1	NA
UHGV-0046066_34	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0046066_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0046066_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0046066_36	PHROG	phrog_859	portal protein	head and packaging
UHGV-0046066_36	UniRef90	UniRef90_K1T614	Minor head protein	NA
UHGV-0046066_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0046066_36	COG	COG2369	NA	NA
UHGV-0046066_36	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0046066_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0046066_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0046066_37	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0046066_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0046066_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0046066_38	Structural annotation	PF06810	NA	NA
UHGV-0046066_39	PHROG	phrog_909	major head protein	head and packaging
UHGV-0046066_39	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0046066_39	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0046066_40	PHROG	phrog_29	major head protein	head and packaging
UHGV-0046066_40	UniRef90	UniRef90_K1TJK6	Phage protein (Fragment)	NA
UHGV-0046066_40	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0046066_40	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0046066_40	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0046066_40	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0046066_42	PHROG	phrog_17977	NA	unknown function
UHGV-0046066_42	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0046066_42	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0046066_42	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0046066_43	Structural annotation	PF11367	NA	NA
UHGV-0046066_44	PHROG	phrog_885	major tail protein	tail
UHGV-0046066_44	eggNOG-mapper	561177.ANHYDRO_01415	NA	NA
UHGV-0046066_44	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0046066_47	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0046066_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0046066_47	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0046066_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0046066_48	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0046066_49	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0046066_49	UniRef90	UniRef90_K1UCK4	Phage minor structural protein	NA
UHGV-0046066_49	eggNOG-mapper	935948.KE386495_gene1321	TIGRFAM phage minor structural protein	NA
UHGV-0046066_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0046066_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0046066_49	COG	COG4926	Phage-related protein	NA
UHGV-0046066_50	Structural annotation	PF10651, PF07703, MF_04116, NF032891, COG4326	NA	NA
UHGV-0046066_52	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0046066_52	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0046066_54	UniRef90	UniRef90_K1TIU6	Protein containing SH3, type 3 domain protein	NA
UHGV-0046066_54	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0046066_54	COG	COG3103	NA	NA
UHGV-0046066_54	Structural annotation	PF18342, PF05382, NF040670, COG4991	NA	NA
UHGV-0046066_56	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0046066_57	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0046066_59	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0046066_59	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0046066_59	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0046066_61	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0046066_62	eggNOG-mapper	1125712.HMPREF1316_1548	NA	NA
UHGV-0046066_65	PHROG	phrog_3754	NA	unknown function
UHGV-0046066_65	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0046066_66	PHROG	phrog_21718	NA	unknown function
UHGV-0046066_66	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0046066_67	PHROG	phrog_22984	NA	unknown function
UHGV-0046066_68	PHROG	phrog_16490	NA	unknown function
UHGV-0046066_68	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0046066_69	PHROG	phrog_20016	NA	unknown function
UHGV-0046066_69	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0046066_69	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0046066_69	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0046066_70	PHROG	phrog_28802	NA	unknown function
UHGV-0046066_70	Structural annotation	PF12510	NA	NA