UHGV-0046103

Genome information

Genome length 25,961 bps

CDS count 50

Completeness 61.59% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046103
vOTU ID	vOTU-038082
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_27158
BioSample	SAMEA2042578
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.09
Jumbo phage	No

Genome content
Genome length	25,961 bps
GC content	39.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.02%
Average CDS length	473.10 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046103_2	PHROG	phrog_544	major head protein	head and packaging
UHGV-0046103_2	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0046103_2	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0046103_2	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0046103_3	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0046103_3	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0046103_3	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0046103_3	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0046103_5	PHROG	phrog_1233	NA	unknown function
UHGV-0046103_5	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0046103_5	Structural annotation	PF20352, COG2856	NA	NA
UHGV-0046103_6	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0046103_7	PHROG	phrog_20016	NA	unknown function
UHGV-0046103_7	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0046103_7	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0046103_7	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0046103_8	PHROG	phrog_16490	NA	unknown function
UHGV-0046103_8	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0046103_9	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0046103_10	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0046103_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0046103_12	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0046103_12	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0046103_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0046103_12	COG	COG2369	NA	NA
UHGV-0046103_12	Structural annotation	PF06152	NA	NA
UHGV-0046103_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0046103_13	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0046103_13	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0046103_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0046103_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0046103_15	UniRef90	UniRef90_A0A3R5WTT1	Phage capsid protein	NA
UHGV-0046103_15	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0046103_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0046103_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0046103_16	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0046103_16	UniRef90	UniRef90_A0A3R5WSV0	Terminase_3 domain-containing protein	NA
UHGV-0046103_16	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0046103_16	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0046103_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0046103_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0046103_16	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0046103_17	PHROG	phrog_33130	NA	unknown function
UHGV-0046103_17	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0046103_17	Structural annotation	PF10922	NA	NA
UHGV-0046103_21	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0046103_21	UniRef90	UniRef90_A0A3R5WW48	XRE family transcriptional regulator	NA
UHGV-0046103_21	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0046103_21	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0046103_21	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0046103_25	UniRef90	UniRef90_A0A412KFA7	ABC transporter ATP-binding protein	NA
UHGV-0046103_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0046103_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0046103_30	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0046103_30	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0046103_30	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0046103_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0046103_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0046103_30	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0046103_32	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0046103_32	UniRef90	UniRef90_A0A3D5WJX6	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0046103_32	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-0046103_32	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0046103_32	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0046103_34	PHROG	phrog_13489	NA	unknown function
UHGV-0046103_34	eggNOG-mapper	1158602.I590_00660	NA	NA
UHGV-0046103_35	PHROG	phrog_874	NA	unknown function
UHGV-0046103_35	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0046103_35	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0046103_35	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0046103_36	PHROG	phrog_20593	NA	unknown function
UHGV-0046103_37	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0046103_37	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0046103_37	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0046103_37	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0046103_37	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0046103_37	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0046103_38	UniRef90	UniRef90_UPI00192387A0	NA	NA
UHGV-0046103_39	PHROG	phrog_8684	NA	unknown function
UHGV-0046103_39	UniRef90	UniRef90_UPI001C0135E5	YopX family protein	NA
UHGV-0046103_39	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0046103_39	Pfam	PF09643	YopX protein	YopX
UHGV-0046103_39	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0046103_39	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0046103_40	UniRef90	UniRef90_A0A6L5YG37	NA	NA
UHGV-0046103_40	eggNOG-mapper	397288.C806_00098	NA	NA
UHGV-0046103_43	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0046103_43	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0046103_43	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0046103_43	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0046103_43	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0046103_43	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0046103_43	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0046103_44	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0046103_44	eggNOG-mapper	1071400.LBUCD034_0926	DnaD domain protein	NA
UHGV-0046103_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0046103_44	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0046103_45	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0046103_45	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0046103_45	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0046103_45	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0046103_45	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0046103_45	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0046103_47	PHROG	phrog_7566	NA	unknown function
UHGV-0046103_47	UniRef90	UniRef90_A0A412KF94	Phosphoenolpyruvate carboxykinase	NA
UHGV-0046103_47	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0046103_48	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0046103_48	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0046103_49	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0046103_49	UniRef90	UniRef90_A0A412KFC1	Single-stranded DNA-binding protein	NA
UHGV-0046103_49	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0046103_49	Pfam	PF04404	ERF superfamily	ERF
UHGV-0046103_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0046103_49	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0046103_50	PHROG	phrog_674	NA	unknown function
UHGV-0046103_50	UniRef90	UniRef90_A0A3R6B153	NA	NA
UHGV-0046103_50	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0046103_50	Pfam	PF07083	NA	DUF1351