UHGV-0046127

Genome information

Genome length 40,305 bps

CDS count 65

Completeness 99.47% (high-quality)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046127
vOTU ID	vOTU-010847
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3447
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.71
Jumbo phage	No

Genome content
Genome length	40,305 bps
GC content	60.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.32%
Average CDS length	575.45 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046127_1	KOfam	K14059	int; integrase	NA
UHGV-0046127_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0046127_1	UniRef90	UniRef90_A0A0H3ECF6	Integrase/recombinase	NA
UHGV-0046127_1	eggNOG-mapper	566552.BIFCAT_00908	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0046127_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0046127_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0046127_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0046127_1	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0046127_2	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0046127_2	UniRef90	UniRef90_K2M212	Peptidase_M78 domain-containing protein	NA
UHGV-0046127_2	eggNOG-mapper	1341695.BBOMB_1075	IrrE N-terminal-like domain	NA
UHGV-0046127_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0046127_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0046127_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0046127_3	eggNOG-mapper	1193128.A200_00080	NA	NA
UHGV-0046127_4	eggNOG-mapper	1435051.BMOU_0749	NA	NA
UHGV-0046127_5	UniRef90	UniRef90_UPI001CFC0F46	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0046127_5	eggNOG-mapper	1435051.BMOU_0266	NA	NA
UHGV-0046127_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0046127_6	UniRef90	UniRef90_A0A174ALV6	Helix-turn-helix domain-containing protein	NA
UHGV-0046127_6	eggNOG-mapper	78345.BMERY_0908	NA	NA
UHGV-0046127_6	Structural annotation	PF08667, MF_00535, NF041677, COG1476	NA	NA
UHGV-0046127_7	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0046127_7	UniRef90	UniRef90_A0A0G9MAT5	HTH cro/C1-type domain-containing protein	NA
UHGV-0046127_7	eggNOG-mapper	702459.BBPR_0881	NA	NA
UHGV-0046127_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046127_7	Structural annotation	PF08667, MF_00535, NF041951, COG3093	NA	NA
UHGV-0046127_10	eggNOG-mapper	702459.BBPR_0882	NA	NA
UHGV-0046127_10	Structural annotation	PF17224, NF009452, COG5456	NA	NA
UHGV-0046127_11	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0046127_11	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0046127_11	UniRef90	UniRef90_A0A174AKK9	Phage antirepressor protein	NA
UHGV-0046127_11	eggNOG-mapper	702459.BBPR_0883	BRO family, N-terminal domain	NA
UHGV-0046127_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0046127_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0046127_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0046127_11	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0046127_13	UniRef90	UniRef90_W4NCM8	Anthranilate phosphoribosyltransferase	NA
UHGV-0046127_13	eggNOG-mapper	1435051.BMOU_0260	NA	NA
UHGV-0046127_13	Structural annotation	PF07092, NF011813, COG5608	NA	NA
UHGV-0046127_14	UniRef90	UniRef90_A0A1X2ZMI0	DNA-binding protein	NA
UHGV-0046127_14	eggNOG-mapper	566552.BIFCAT_00891	NA	NA
UHGV-0046127_17	eggNOG-mapper	702459.BBPR_0888	NA	NA
UHGV-0046127_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0046127_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0046127_19	UniRef90	UniRef90_A0A8B2ZLB0	Single-stranded DNA-binding protein	NA
UHGV-0046127_19	eggNOG-mapper	398513.BBNG_00826	Single-strand binding protein family	NA
UHGV-0046127_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0046127_19	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0046127_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0046127_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0046127_19	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0046127_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0046127_20	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0046127_20	UniRef90	UniRef90_A0A174AKI3	Chromosome partitioning protein ParB	NA
UHGV-0046127_20	eggNOG-mapper	398513.BBNG_00827	ParB-like nuclease domain	NA
UHGV-0046127_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0046127_20	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0046127_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0046127_20	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0046127_21	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0046127_21	UniRef90	UniRef90_A0A6A2RLX9	Helix-turn-helix domain-containing protein	NA
UHGV-0046127_21	eggNOG-mapper	566552.BIFCAT_00887	Transcriptional regulator	NA
UHGV-0046127_21	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0046127_21	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0046127_21	Structural annotation	PF01978, TIGR01610, COG5529	NA	NA
UHGV-0046127_22	eggNOG-mapper	566552.BIFCAT_00886	NA	NA
UHGV-0046127_23	PHROG	phrog_740	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046127_23	UniRef90	UniRef90_A0A0B5BGU1	Restriction endonuclease	NA
UHGV-0046127_23	eggNOG-mapper	566552.BIFCAT_00885	HNH endonuclease	NA
UHGV-0046127_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0046127_24	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0046127_24	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0046127_24	UniRef90	UniRef90_A0A174C2P7	Oligoribonuclease Orn	NA
UHGV-0046127_24	eggNOG-mapper	566552.BIFCAT_00884	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0046127_24	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0046127_24	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-0046127_25	Structural annotation	PF07073	NA	NA
UHGV-0046127_31	UniRef90	UniRef90_A0A3D1TL16	Antitoxin	NA
UHGV-0046127_31	eggNOG-mapper	566552.BIFCAT_00880	NA	NA
UHGV-0046127_31	Structural annotation	PF04218	NA	NA
UHGV-0046127_32	PHROG	phrog_908	NA	unknown function
UHGV-0046127_32	UniRef90	UniRef90_A0A412KBG6	DNA-binding protein	NA
UHGV-0046127_32	eggNOG-mapper	566552.BIFCAT_00879	tRNA 5'-leader removal	NA
UHGV-0046127_32	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0046127_32	Structural annotation	COG0789	NA	NA
UHGV-0046127_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0046127_33	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046127_33	UniRef90	UniRef90_A0A6N2T2B9	HNH endonuclease	NA
UHGV-0046127_33	eggNOG-mapper	702459.BBPR_0906	NA	NA
UHGV-0046127_34	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0046127_34	UniRef90	UniRef90_A0A0G9MAV2	Gp60	NA
UHGV-0046127_34	eggNOG-mapper	702459.BBPR_0907	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0046127_34	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0046127_34	Structural annotation	PF09250	NA	NA
UHGV-0046127_35	PHROG	phrog_1496	terminase small subunit	head and packaging
UHGV-0046127_35	UniRef90	UniRef90_A0A0G9MAU8	Gp25	NA
UHGV-0046127_35	eggNOG-mapper	398513.BBNG_00844	NA	NA
UHGV-0046127_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0046127_36	UniRef90	UniRef90_A0A173Y8F7	Phage terminase protein large subunit TerL	NA
UHGV-0046127_36	eggNOG-mapper	158787.BSCA_0743	Terminase	NA
UHGV-0046127_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0046127_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0046127_37	PHROG	phrog_104	portal protein	head and packaging
UHGV-0046127_37	UniRef90	UniRef90_A0A0G9MEM4	Plasmid partitioning protein ParA	NA
UHGV-0046127_37	eggNOG-mapper	398513.BBNG_00846	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0046127_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0046127_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0046127_38	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0046127_38	UniRef90	UniRef90_A0A173Y8N6	Gp4 phagic protein	NA
UHGV-0046127_38	eggNOG-mapper	158787.BSCA_0741	NA	NA
UHGV-0046127_38	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0046127_39	eggNOG-mapper	1692.BMAGN_0744	NA	NA
UHGV-0046127_40	PHROG	phrog_15003	head scaffolding protein	head and packaging
UHGV-0046127_40	eggNOG-mapper	158787.BSCA_0739	NA	NA
UHGV-0046127_40	Structural annotation	PF14265	NA	NA
UHGV-0046127_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0046127_41	UniRef90	UniRef90_A0A173Y720	Major capsid subunit gp9	NA
UHGV-0046127_41	eggNOG-mapper	158787.BSCA_0738	Phage capsid family	NA
UHGV-0046127_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0046127_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0046127_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0046127_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0046127_42	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0046127_42	UniRef90	UniRef90_UPI001BDC2B90	phage head-tail connector protein	NA
UHGV-0046127_42	eggNOG-mapper	158787.BSCA_0736	NA	NA
UHGV-0046127_42	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0046127_43	PHROG	phrog_13779	NA	unknown function
UHGV-0046127_43	UniRef90	UniRef90_A0A173YWC6	Phage associated protein	NA
UHGV-0046127_43	eggNOG-mapper	158787.BSCA_0735	NA	NA
UHGV-0046127_43	Pfam	PF19586	NA	DUF6093
UHGV-0046127_43	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0046127_44	PHROG	phrog_19109	NA	unknown function
UHGV-0046127_44	eggNOG-mapper	158787.BSCA_0734	NA	NA
UHGV-0046127_44	Structural annotation	TIGR01725	NA	NA
UHGV-0046127_45	UniRef90	UniRef90_A0A173Y827	Transcriptional regulator	NA
UHGV-0046127_45	eggNOG-mapper	1437603.BMON_0133	NA	NA
UHGV-0046127_45	Structural annotation	PF06141	NA	NA
UHGV-0046127_46	PHROG	phrog_2491	major tail protein	tail
UHGV-0046127_46	UniRef90	UniRef90_A0A087DGN0	Gp28	NA
UHGV-0046127_46	eggNOG-mapper	158787.BSCA_0732	NA	NA
UHGV-0046127_46	Structural annotation	PF16463, TIGR01611, COG5437	NA	NA
UHGV-0046127_47	UniRef90	UniRef90_A0A1X2YXV4	DNAase primase	NA
UHGV-0046127_47	eggNOG-mapper	158787.BSCA_0730	NA	NA
UHGV-0046127_47	Structural annotation	PF08890	NA	NA
UHGV-0046127_48	UniRef90	UniRef90_A0A173Y8M1	Phage terminase protein large subunit-like protein	NA
UHGV-0046127_48	eggNOG-mapper	1437603.BMON_0130	NA	NA
UHGV-0046127_49	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0046127_49	UniRef90	UniRef90_A0A0G9MEN2	Tail protein	NA
UHGV-0046127_49	eggNOG-mapper	702459.BBPR_0923	Phage-related minor tail protein	NA
UHGV-0046127_49	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0046127_49	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0046127_49	COG	COG5283	Phage-related tail protein	NA
UHGV-0046127_49	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0046127_50	UniRef90	UniRef90_UPI001EDCD142	phage tail family protein	NA
UHGV-0046127_50	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0046127_50	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0046127_51	PHROG	phrog_538	minor tail protein	tail
UHGV-0046127_51	UniRef90	UniRef90_A0A173YVU6	Phage head fiber protein	NA
UHGV-0046127_51	eggNOG-mapper	1435051.BMOU_0222	NA	NA
UHGV-0046127_51	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0046127_53	PHROG	phrog_13141	NA	unknown function
UHGV-0046127_53	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0046127_53	Structural annotation	PF20747, PF08931	NA	NA
UHGV-0046127_56	KOfam	K14059	int; integrase	NA
UHGV-0046127_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0046127_56	UniRef90	UniRef90_A0A173Y8E9	Phage integrase	NA
UHGV-0046127_56	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-0046127_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0046127_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0046127_56	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0046127_57	PHROG	phrog_28754	NA	unknown function
UHGV-0046127_57	UniRef90	UniRef90_A0A174BVV4	Tail type measure protein	NA
UHGV-0046127_57	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0046127_57	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0046127_59	Structural annotation	PF19487, MF_01537, COG4935	NA	NA
UHGV-0046127_62	PHROG	phrog_1397	NA	unknown function
UHGV-0046127_62	UniRef90	UniRef90_A0A3D0Q191	PRTRC system protein E	NA
UHGV-0046127_62	eggNOG-mapper	1680.BADO_1218	NA	NA
UHGV-0046127_64	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0046127_64	PHROG	phrog_14048	endolysin	lysis
UHGV-0046127_64	UniRef90	UniRef90_A0A173Y9A1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046127_64	eggNOG-mapper	158787.BSCA_1068	Ami_2	NA
UHGV-0046127_64	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0046127_64	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0046127_64	Structural annotation	PF08460, PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0046127_65	UniRef90	UniRef90_A0A0A7I2K7	DoxX	NA
UHGV-0046127_65	eggNOG-mapper	1120979.ATVB01000037_gene1493	NA	NA