UHGV-0046200

Genome information

Genome length 32,279 bps

CDS count 48

Completeness 91.75% (high-quality)

geNomad score 0.9578

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046200
vOTU ID	vOTU-071080
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_20540
BioSample	SAMEA2041928
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.75% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9578
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.43
Jumbo phage	No

Genome content
Genome length	32,279 bps
GC content	36.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.17%
Average CDS length	623.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046200_1	KOfam	K14059	int; integrase	NA
UHGV-0046200_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0046200_1	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0046200_1	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0046200_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0046200_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0046200_1	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0046200_2	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0046200_2	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0046200_2	UniRef90	UniRef90_A0A1E7S2B4	HicB-like domain-containing protein	NA
UHGV-0046200_2	eggNOG-mapper	903814.ELI_3151	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0046200_2	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0046200_2	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0046200_2	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0046200_3	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0046200_3	UniRef90	UniRef90_A0A7X2NEB3	Addiction module toxin, HicA family	NA
UHGV-0046200_3	eggNOG-mapper	903814.ELI_3150	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0046200_3	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0046200_3	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0046200_3	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0046200_4	PHROG	phrog_1847	NA	unknown function
UHGV-0046200_4	UniRef90	UniRef90_U2Q2K4	T5orf172 domain-containing protein	NA
UHGV-0046200_4	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0046200_4	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0046200_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0046200_4	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0046200_5	PHROG	phrog_1914	NA	unknown function
UHGV-0046200_5	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0046200_5	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0046200_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0046200_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0046200_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0046200_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0046200_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0046200_6	UniRef90	UniRef90_UPI00056F899A	transcriptional regulator	NA
UHGV-0046200_6	eggNOG-mapper	1211844.CBLM010000016_gene1522	Peptidase S24-like	NA
UHGV-0046200_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046200_6	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0046200_6	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0046200_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0046200_7	UniRef90	UniRef90_A0A367GFH2	Transcriptional regulator	NA
UHGV-0046200_7	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0046200_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0046200_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0046200_9	PHROG	phrog_2232	NA	unknown function
UHGV-0046200_9	UniRef90	UniRef90_UPI00164B82D7	NA	NA
UHGV-0046200_9	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0046200_9	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0046200_9	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0046200_10	UniRef90	UniRef90_UPI0005510EBF	helix-turn-helix domain-containing protein	NA
UHGV-0046200_11	Structural annotation	COG1862	NA	NA
UHGV-0046200_15	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0046200_15	eggNOG-mapper	398512.JQKC01000002_gene1950	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0046200_15	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0046200_15	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0046200_15	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0046200_16	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0046200_16	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0046200_16	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0046200_16	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0046200_16	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0046200_16	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0046200_16	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0046200_16	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0046200_18	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046200_18	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0046200_18	eggNOG-mapper	756499.Desde_1065	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0046200_18	Pfam	PF13921	Myb-like DNA-binding domain	Myb_DNA-bind_6
UHGV-0046200_18	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0046200_18	Structural annotation	PF13936, NF040595, COG2771	NA	NA
UHGV-0046200_19	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0046200_21	Structural annotation	PF14282, COG5570	NA	NA
UHGV-0046200_22	PHROG	phrog_824	NA	unknown function
UHGV-0046200_22	UniRef90	UniRef90_UPI00164A50A6	VRR-NUC domain-containing protein	NA
UHGV-0046200_22	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0046200_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0046200_22	Structural annotation	PF08774	NA	NA
UHGV-0046200_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0046200_24	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0046200_24	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0046200_25	Structural annotation	TIGR01636	NA	NA
UHGV-0046200_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046200_26	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0046200_26	eggNOG-mapper	1405.DJ92_863	HNH endonuclease	NA
UHGV-0046200_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0046200_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0046200_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0046200_27	UniRef90	UniRef90_UPI00057D0A7C	P27 family phage terminase small subunit	NA
UHGV-0046200_27	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0046200_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0046200_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0046200_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0046200_28	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0046200_28	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0046200_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0046200_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0046200_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0046200_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0046200_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0046200_29	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0046200_29	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0046200_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0046200_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0046200_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0046200_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0046200_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0046200_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0046200_30	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0046200_30	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0046200_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0046200_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0046200_30	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0046200_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0046200_31	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0046200_31	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0046200_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0046200_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0046200_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0046200_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0046200_32	PHROG	phrog_749	NA	unknown function
UHGV-0046200_32	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0046200_32	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0046200_33	PHROG	phrog_19734	NA	unknown function
UHGV-0046200_33	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0046200_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0046200_34	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0046200_34	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0046200_35	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0046200_35	eggNOG-mapper	1118057.CAGX01000043_gene486	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0046200_35	Structural annotation	TIGR01725	NA	NA
UHGV-0046200_36	PHROG	phrog_88	major tail protein	tail
UHGV-0046200_36	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0046200_36	eggNOG-mapper	483218.BACPEC_01314	phage major tail protein, phi13 family	NA
UHGV-0046200_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0046200_36	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0046200_37	Structural annotation	PF11836	NA	NA
UHGV-0046200_39	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0046200_39	PHROG	phrog_5218	NA	unknown function
UHGV-0046200_39	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0046200_39	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0046200_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0046200_39	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0046200_39	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0046200_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0046200_40	UniRef90	UniRef90_UPI000BB5198E	phage tail family protein	NA
UHGV-0046200_40	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0046200_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0046200_40	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0046200_41	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0046200_41	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0046200_41	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0046200_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0046200_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0046200_42	Structural annotation	PF10651, PF01095	NA	NA
UHGV-0046200_44	UniRef90	UniRef90_R6MQZ9	Two-component system sensor histidine kinase	NA
UHGV-0046200_45	KOfam	K07273	acm; lysozyme	NA
UHGV-0046200_45	PHROG	phrog_291	endolysin	lysis
UHGV-0046200_45	UniRef90	UniRef90_R6NXV5	Glycoside Hydrolase Family 25-like lysozyme/endolysin	NA
UHGV-0046200_45	eggNOG-mapper	1120933.ATUY01000002_gene158	lysozyme activity	NA
UHGV-0046200_45	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0046200_45	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0046200_45	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0046200_46	PHROG	phrog_322	NA	unknown function
UHGV-0046200_46	UniRef90	UniRef90_UPI000F7ADC69	Gp49 family protein	NA
UHGV-0046200_46	eggNOG-mapper	1445809.A0A0A7AR29_9CAUD	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0046200_46	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0046200_46	dbAPIS	APIS043	NA	NA
UHGV-0046200_46	Structural annotation	PF13876	NA	NA
UHGV-0046200_47	PHROG	phrog_199	holin	lysis
UHGV-0046200_47	UniRef90	UniRef90_UPI00164BAF69	phage holin family protein	NA
UHGV-0046200_47	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0046200_47	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0046200_47	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0046200_47	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0046200_47	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0046200_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0046200_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0046200_48	UniRef90	UniRef90_A0A3C1CUP1	HTH cro/C1-type domain-containing protein	NA
UHGV-0046200_48	eggNOG-mapper	588581.Cpap_0877	helix-turn-helix	NA
UHGV-0046200_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046200_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0046200_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA