UHGV-0046221

Genome information

Genome length 38,987 bps

CDS count 61

Completeness 93.18% (high-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046221
vOTU ID	vOTU-061022
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_982
BioSample	NA
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.25
Jumbo phage	No

Genome content
Genome length	38,987 bps
GC content	59.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.81%
Average CDS length	598.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046221_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0046221_1	PHROG	phrog_291	endolysin	lysis
UHGV-0046221_1	UniRef90	UniRef90_A0A6A2SCZ5	Glycoside hydrolase	NA
UHGV-0046221_1	eggNOG-mapper	78345.BMERY_0862	Glycosyl hydrolases family 25	NA
UHGV-0046221_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0046221_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0046221_1	Structural annotation	PF01183, NF003645, COG3757	NA	NA
UHGV-0046221_3	UniRef90	UniRef90_A0A1L5L3I3	PilM	NA
UHGV-0046221_5	UniRef90	UniRef90_A0A1L5L3T6	MurA: UDP-N-acetylglucosamine (Fragment)	NA
UHGV-0046221_5	Structural annotation	PF01105, NF033147	NA	NA
UHGV-0046221_7	PHROG	phrog_28754	NA	unknown function
UHGV-0046221_7	UniRef90	UniRef90_A0A174BVV4	Tail type measure protein	NA
UHGV-0046221_7	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0046221_7	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0046221_8	KOfam	K14059	int; integrase	NA
UHGV-0046221_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0046221_8	UniRef90	UniRef90_A0A1X3A1N7	Recombinase	NA
UHGV-0046221_8	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-0046221_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0046221_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0046221_8	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0046221_9	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0046221_9	Structural annotation	PF08931	NA	NA
UHGV-0046221_10	eggNOG-mapper	1680.BADO_1227	NA	NA
UHGV-0046221_11	PHROG	phrog_9994	NA	unknown function
UHGV-0046221_11	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0046221_11	Structural annotation	PF20747, PF08931	NA	NA
UHGV-0046221_13	PHROG	phrog_538	minor tail protein	tail
UHGV-0046221_13	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0046221_13	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0046221_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0046221_14	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0046221_14	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0046221_15	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0046221_15	UniRef90	UniRef90_A0A4R0U113	TP901 family phage tail tape measure protein	NA
UHGV-0046221_15	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0046221_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0046221_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0046221_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0046221_15	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0046221_16	UniRef90	UniRef90_A0A1X2YXV5	Terminase	NA
UHGV-0046221_17	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-0046221_17	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-0046221_17	Structural annotation	PF08890	NA	NA
UHGV-0046221_18	PHROG	phrog_2491	major tail protein	tail
UHGV-0046221_18	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-0046221_18	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0046221_18	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-0046221_19	UniRef90	UniRef90_A0A076JJ59	Transcriptional regulator	NA
UHGV-0046221_19	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0046221_19	Structural annotation	PF06141	NA	NA
UHGV-0046221_20	PHROG	phrog_19109	NA	unknown function
UHGV-0046221_20	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0046221_20	Structural annotation	TIGR01725	NA	NA
UHGV-0046221_21	PHROG	phrog_13779	NA	unknown function
UHGV-0046221_21	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-0046221_21	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0046221_21	Pfam	PF19586	NA	DUF6093
UHGV-0046221_21	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0046221_22	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0046221_22	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0046221_22	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0046221_22	Pfam	PF09355	NA	Phage_Gp19
UHGV-0046221_22	Structural annotation	PF09355	NA	NA
UHGV-0046221_23	UniRef90	UniRef90_I3BBX9	Head fiber domain protein	NA
UHGV-0046221_24	PHROG	phrog_15682	NA	unknown function
UHGV-0046221_25	PHROG	phrog_212	major head protein	head and packaging
UHGV-0046221_25	UniRef90	UniRef90_UPI001038A13F	phage capsid protein	NA
UHGV-0046221_25	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-0046221_25	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0046221_26	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0046221_26	UniRef90	UniRef90_UPI001115A562	NA	NA
UHGV-0046221_26	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-0046221_27	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0046221_27	UniRef90	UniRef90_A0A8A9ICF6	CdiA_C domain-containing protein	NA
UHGV-0046221_27	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0046221_28	PHROG	phrog_104	portal protein	head and packaging
UHGV-0046221_28	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0046221_28	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0046221_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0046221_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0046221_29	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0046221_29	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0046221_29	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0046221_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0046221_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0046221_30	PHROG	phrog_226	minor tail protein	tail
UHGV-0046221_30	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0046221_32	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0046221_32	UniRef90	UniRef90_A0A2N5IVN0	Chromosome partitioning protein ParB	NA
UHGV-0046221_32	eggNOG-mapper	1680.BADO_1246	NA	NA
UHGV-0046221_32	Pfam	PF14386	NA	DUF4417
UHGV-0046221_33	PHROG	phrog_8680	NA	unknown function
UHGV-0046221_33	UniRef90	UniRef90_UPI001C66BAF0	NA	NA
UHGV-0046221_33	eggNOG-mapper	1680.BADO_1246	NA	NA
UHGV-0046221_33	Pfam	PF14386	NA	DUF4417
UHGV-0046221_34	PHROG	phrog_1808	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046221_34	UniRef90	UniRef90_A0A4Y6EVZ6	HNH endonuclease	NA
UHGV-0046221_34	eggNOG-mapper	675635.Psed_5784	endonuclease activity	NA
UHGV-0046221_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0046221_36	PHROG	phrog_34725	NA	unknown function
UHGV-0046221_37	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0046221_37	UniRef90	UniRef90_A0A133KJK7	G28 phagic protein	NA
UHGV-0046221_37	eggNOG-mapper	398513.BBNG_00839	Transcriptional regulator	NA
UHGV-0046221_37	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0046221_37	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0046221_38	PHROG	phrog_8013	NA	unknown function
UHGV-0046221_38	eggNOG-mapper	158787.BSCA_0747	tRNA 5'-leader removal	NA
UHGV-0046221_38	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0046221_38	Structural annotation	COG0789	NA	NA
UHGV-0046221_39	PHROG	phrog_22401	NA	unknown function
UHGV-0046221_39	eggNOG-mapper	158787.BSCA_0748	NA	NA
UHGV-0046221_40	PHROG	phrog_31208	NA	unknown function
UHGV-0046221_40	eggNOG-mapper	1437608.BBIA_1862	NA	NA
UHGV-0046221_40	AcrCatalog	cluster_17067	NA	NA
UHGV-0046221_41	PHROG	phrog_33887	NA	unknown function
UHGV-0046221_43	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0046221_43	UniRef90	UniRef90_A0A4R0TH52	Prim-Pol domain-containing protein	NA
UHGV-0046221_43	eggNOG-mapper	1437608.BBIA_0630	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0046221_43	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0046221_43	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0046221_43	Structural annotation	PF01057, NF011296, COG3378	NA	NA
UHGV-0046221_44	PHROG	phrog_1911	NA	unknown function
UHGV-0046221_44	UniRef90	UniRef90_A0A1X3AAF0	NA	NA
UHGV-0046221_44	eggNOG-mapper	1437608.BBIA_0632	single-stranded DNA binding	NA
UHGV-0046221_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0046221_44	Structural annotation	PF00196, PF17427, NF006039, TIGR03879	NA	NA
UHGV-0046221_45	PHROG	phrog_1674	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046221_45	UniRef90	UniRef90_UPI001C20FE2E	PD-(D/E)XK nuclease family protein	NA
UHGV-0046221_45	eggNOG-mapper	158787.BSCA_0753	NA	NA
UHGV-0046221_45	Structural annotation	PF06023, MF_03030, TIGR01896, COG4343	NA	NA
UHGV-0046221_47	eggNOG-mapper	1437609.BCAL_1729	NA	NA
UHGV-0046221_48	eggNOG-mapper	1437608.BBIA_1453	NA	NA
UHGV-0046221_49	eggNOG-mapper	158787.BSCA_0757	NA	NA
UHGV-0046221_49	Structural annotation	PF15188	NA	NA
UHGV-0046221_50	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0046221_50	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0046221_50	UniRef90	UniRef90_I3BFB8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0046221_50	eggNOG-mapper	158787.BSCA_0758	Endodeoxyribonuclease RusA	NA
UHGV-0046221_50	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0046221_50	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0046221_50	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0046221_52	Structural annotation	PF19885, MF_00724, NF038178	NA	NA
UHGV-0046221_53	UniRef90	UniRef90_UPI0018A0E09C	helix-turn-helix domain-containing protein	NA
UHGV-0046221_53	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0046221_53	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0046221_54	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0046221_54	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0046221_54	UniRef90	UniRef90_A0A2I1J283	Bro-N domain-containing protein	NA
UHGV-0046221_54	eggNOG-mapper	1437608.BBIA_0645	BRO family, N-terminal domain	NA
UHGV-0046221_54	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0046221_54	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0046221_54	COG	COG3617	Prophage antirepressor	NA
UHGV-0046221_54	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0046221_57	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0046221_57	UniRef90	UniRef90_B7GRZ8	HTH cro/C1-type domain-containing protein	NA
UHGV-0046221_57	eggNOG-mapper	78346.BRUM_0420	NA	NA
UHGV-0046221_57	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0046221_57	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0046221_58	UniRef90	UniRef90_A0A4R0VA71	HTH cro/C1-type domain-containing protein	NA
UHGV-0046221_58	eggNOG-mapper	78346.BRUM_0421	NA	NA
UHGV-0046221_58	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0046221_59	PHROG	phrog_87	metallo-protease	other
UHGV-0046221_59	UniRef90	UniRef90_A0A0M0VMS4	Peptidase_M78 domain-containing protein	NA
UHGV-0046221_59	eggNOG-mapper	1437608.BBIA_2188	IrrE N-terminal-like domain	NA
UHGV-0046221_59	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0046221_59	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0046221_60	UniRef90	UniRef90_A0A080N4S8	DNA-binding HIRAN domain protein	NA
UHGV-0046221_60	eggNOG-mapper	1341695.BBOMB_1072	HIRAN domain	NA
UHGV-0046221_60	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0046221_61	PHROG	phrog_5978	NA	unknown function
UHGV-0046221_61	UniRef90	UniRef90_A0A4R0S4B0	Fido domain-containing protein	NA
UHGV-0046221_61	eggNOG-mapper	1680.BADO_1636	Fic/DOC family	NA
UHGV-0046221_61	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0046221_61	COG	COG3177	Fic family protein	NA
UHGV-0046221_61	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA