UHGV-0046304

Genome information

Genome length 24,285 bps

CDS count 35

Completeness 88.98% (medium-quality)

geNomad score 0.9590

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046304
vOTU ID	vOTU-010581
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_26315
BioSample	SAMEA2042911
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9590
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.11
Jumbo phage	No

Genome content
Genome length	24,285 bps
GC content	36.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	79.16%
Average CDS length	550.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046304_1	UniRef90	UniRef90_UPI001F0320C0	capsular biosynthesis protein	NA
UHGV-0046304_1	eggNOG-mapper	1408323.JQKK01000004_gene2360	D,D-heptose 1,7-bisphosphate phosphatase	NA
UHGV-0046304_1	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0046304_2	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0046304_2	PHROG	phrog_9764	NA	unknown function
UHGV-0046304_2	UniRef90	UniRef90_A0A3E3DP64	Type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-0046304_2	eggNOG-mapper	999413.HMPREF1094_04511	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-0046304_2	PADLOC	AbiQ	AbiQ	Abi
UHGV-0046304_2	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-0046304_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0046304_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0046304_3	UniRef90	UniRef90_A0A1W1X195	Integrase/recombinase XerD	NA
UHGV-0046304_3	eggNOG-mapper	1540257.JQMW01000009_gene3340	Belongs to the 'phage' integrase family	NA
UHGV-0046304_3	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0046304_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0046304_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0046304_3	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0046304_4	PHROG	phrog_937	hemolysin	other
UHGV-0046304_4	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0046304_5	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0046304_5	UniRef90	UniRef90_A0A0X8VB37	Prophage endopeptidase tail	NA
UHGV-0046304_5	eggNOG-mapper	1443125.Z962_05575	Prophage endopeptidase tail	NA
UHGV-0046304_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0046304_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0046304_5	COG	COG4926	Phage-related protein	NA
UHGV-0046304_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0046304_6	PHROG	phrog_2310	NA	unknown function
UHGV-0046304_6	eggNOG-mapper	1460635.JCM19038_2823	NA	NA
UHGV-0046304_8	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0046304_8	UniRef90	UniRef90_R5AIX9	BppU_N domain-containing protein	NA
UHGV-0046304_8	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0046304_8	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0046304_8	COG	COG3209	NA	NA
UHGV-0046304_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0046304_9	UniRef90	UniRef90_A0A350TW29	Phage tail protein	NA
UHGV-0046304_9	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-0046304_9	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0046304_9	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0046304_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0046304_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0046304_10	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0046304_10	UniRef90	UniRef90_A0A0X1U6Z5	Phage-related minor tail protein	NA
UHGV-0046304_10	eggNOG-mapper	642492.Clole_1867	Phage tail tape measure protein TP901	NA
UHGV-0046304_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0046304_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0046304_12	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0046304_12	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-0046304_12	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0046304_13	Structural annotation	PF06141, COG3167	NA	NA
UHGV-0046304_14	UniRef90	UniRef90_UPI00085CD908	HK97 gp10 family phage protein	NA
UHGV-0046304_14	eggNOG-mapper	768710.DesyoDRAFT_3136	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0046304_14	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0046304_15	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0046304_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-0046304_17	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0046304_17	eggNOG-mapper	642492.Clole_0972	NA	NA
UHGV-0046304_17	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0046304_18	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0046304_18	UniRef90	UniRef90_UPI00085C378A	NA	NA
UHGV-0046304_18	eggNOG-mapper	642492.Clole_0971	NA	NA
UHGV-0046304_18	Pfam	PF14265	NA	DUF4355
UHGV-0046304_18	Structural annotation	PF14265	NA	NA
UHGV-0046304_19	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0046304_19	UniRef90	UniRef90_A0A0X8VEJ5	Phage Mu protein F like protein	NA
UHGV-0046304_19	eggNOG-mapper	642492.Clole_0969	cell adhesion	NA
UHGV-0046304_19	COG	COG2369	NA	NA
UHGV-0046304_19	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0046304_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0046304_20	UniRef90	UniRef90_A0A110A7P9	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0046304_20	eggNOG-mapper	642492.Clole_0968	Phage portal protein, SPP1 family	NA
UHGV-0046304_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0046304_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0046304_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0046304_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0046304_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0046304_21	UniRef90	UniRef90_A0A0X8VB17	Phage terminase large subunit	NA
UHGV-0046304_21	eggNOG-mapper	86416.Clopa_1892	Phage terminase, large subunit, PBSX family	NA
UHGV-0046304_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0046304_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0046304_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0046304_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0046304_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0046304_22	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0046304_22	UniRef90	UniRef90_A0A3D4VTN0	HTH_8 domain-containing protein	NA
UHGV-0046304_22	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0046304_24	PHROG	phrog_13256	NA	unknown function
UHGV-0046304_24	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0046304_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0046304_25	PHROG	phrog_18293	methyltransferase	other
UHGV-0046304_25	UniRef90	UniRef90_A0A832Q1E6	Methyltransferase	NA
UHGV-0046304_25	eggNOG-mapper	755731.Clo1100_1145	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0046304_25	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0046304_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0046304_25	COG	COG0863	DNA modification methylase	NA
UHGV-0046304_25	Structural annotation	PF01555, NF008572, COG0863	NA	NA
UHGV-0046304_26	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0046304_26	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0046304_26	UniRef90	UniRef90_A0A1I5LYR1	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0046304_26	eggNOG-mapper	1408311.JNJM01000003_gene2816	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0046304_26	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0046304_26	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0046304_26	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0046304_27	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0046304_27	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0046304_27	UniRef90	UniRef90_UPI0016511A60	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0046304_27	eggNOG-mapper	665956.HMPREF1032_00122	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0046304_27	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0046304_28	Structural annotation	PF11645, MF_01490, NF040854, COG1591	NA	NA
UHGV-0046304_29	eggNOG-mapper	397290.C810_01731	NA	NA
UHGV-0046304_30	PHROG	phrog_36702	NA	unknown function
UHGV-0046304_30	eggNOG-mapper	397290.C810_01700	NA	NA
UHGV-0046304_31	UniRef90	UniRef90_A0A4S2HFY1	NA	NA
UHGV-0046304_31	eggNOG-mapper	397288.C806_01227	NA	NA
UHGV-0046304_34	UniRef90	UniRef90_A0A401LF18	HTH cro/C1-type domain-containing protein	NA
UHGV-0046304_34	eggNOG-mapper	1121289.JHVL01000006_gene2897	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0046304_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0046304_34	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0046304_35	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin