UHGV-0046370

Genome information

Genome length 35,636 bps

CDS count 54

Completeness 97.35% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046370
vOTU ID	vOTU-008816
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_28595
BioSample	SAMEA2042738
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.35% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.08
Jumbo phage	No

Genome content
Genome length	35,636 bps
GC content	37.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.82%
Average CDS length	601.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046370_2	eggNOG-mapper	1504823.CCMM01000008_gene725	NA	NA
UHGV-0046370_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0046370_3	PHROG	phrog_435	endolysin	lysis
UHGV-0046370_3	UniRef90	UniRef90_UPI001EE924D3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046370_3	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-0046370_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0046370_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046370_3	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0046370_4	PHROG	phrog_774	NA	unknown function
UHGV-0046370_4	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0046370_5	PHROG	phrog_199	holin	lysis
UHGV-0046370_5	UniRef90	UniRef90_E2NU60	Toxin secretion/phage lysis holin	NA
UHGV-0046370_5	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0046370_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0046370_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0046370_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0046370_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0046370_6	PHROG	phrog_372	tail protein	tail
UHGV-0046370_6	UniRef90	UniRef90_UPI0006C32325	NA	NA
UHGV-0046370_6	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-0046370_6	Pfam	PF05895	NA	DUF859
UHGV-0046370_6	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0046370_7	PHROG	phrog_18110	NA	unknown function
UHGV-0046370_7	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0046370_7	COG	COG4926	Phage-related protein	NA
UHGV-0046370_8	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-0046370_8	UniRef90	UniRef90_A0A087BZT1	NA	NA
UHGV-0046370_8	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA
UHGV-0046370_8	Structural annotation	PF14874, NF038186	NA	NA
UHGV-0046370_9	PHROG	phrog_15074	NA	unknown function
UHGV-0046370_9	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-0046370_9	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0046370_9	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0046370_10	PHROG	phrog_1194	NA	unknown function
UHGV-0046370_10	eggNOG-mapper	1504823.CCMM01000008_gene1031	NA	NA
UHGV-0046370_10	Pfam	PF20458	NA	DUF6711
UHGV-0046370_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0046370_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0046370_11	UniRef90	UniRef90_A0A6N9L4U2	Tape measure protein	NA
UHGV-0046370_11	eggNOG-mapper	650150.ERH_0621	tape measure	NA
UHGV-0046370_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0046370_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0046370_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0046370_12	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0046370_12	UniRef90	UniRef90_UPI0011C9B36A	NA	NA
UHGV-0046370_12	eggNOG-mapper	445974.CLORAM_02923	NA	NA
UHGV-0046370_12	Pfam	PF19591	NA	DUF6096
UHGV-0046370_12	Structural annotation	PF19591	NA	NA
UHGV-0046370_13	PHROG	phrog_158	major tail protein	tail
UHGV-0046370_13	UniRef90	UniRef90_A0A6N9L2K6	Phage tail protein	NA
UHGV-0046370_13	eggNOG-mapper	445974.CLORAM_02924	Phage tail tube protein, TTP	NA
UHGV-0046370_13	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0046370_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0046370_14	PHROG	phrog_78	tail terminator	connector
UHGV-0046370_14	eggNOG-mapper	1504823.CCMM01000008_gene1036	NA	NA
UHGV-0046370_14	Structural annotation	PF05657	NA	NA
UHGV-0046370_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0046370_15	UniRef90	UniRef90_A0A6N9L3B6	HK97 gp10 family phage protein	NA
UHGV-0046370_15	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0046370_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0046370_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0046370_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0046370_16	PHROG	phrog_2168	NA	unknown function
UHGV-0046370_16	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-0046370_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0046370_17	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0046370_17	UniRef90	UniRef90_UPI001C101B39	phage head-tail connector protein	NA
UHGV-0046370_17	eggNOG-mapper	1235800.C819_00483	Phage gp6-like head-tail connector protein	NA
UHGV-0046370_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0046370_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0046370_18	PHROG	phrog_2724	NA	unknown function
UHGV-0046370_18	UniRef90	UniRef90_A0A6N9L4P9	Rho_N domain-containing protein	NA
UHGV-0046370_18	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0046370_18	COG	COG0261	Ribosomal protein L21	NA
UHGV-0046370_18	Structural annotation	PF07498	NA	NA
UHGV-0046370_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0046370_19	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0046370_19	eggNOG-mapper	1211844.CBLM010000016_gene1491	NA	NA
UHGV-0046370_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0046370_20	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0046370_20	UniRef90	UniRef90_A0A6N9L4V5	NA	NA
UHGV-0046370_20	eggNOG-mapper	1211844.CBLM010000016_gene1492	NA	NA
UHGV-0046370_20	Pfam	PF14265	NA	DUF4355
UHGV-0046370_20	Structural annotation	PF14265	NA	NA
UHGV-0046370_21	PHROG	phrog_30609	NA	unknown function
UHGV-0046370_21	Structural annotation	PF21485	NA	NA
UHGV-0046370_22	PHROG	phrog_3675	NA	unknown function
UHGV-0046370_22	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0046370_22	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-0046370_22	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0046370_22	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0046370_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0046370_24	UniRef90	UniRef90_A0A6N9L4X5	Phage_Mu_F domain-containing protein	NA
UHGV-0046370_24	eggNOG-mapper	1211844.CBLM010000016_gene1495	Phage Mu protein F like protein	NA
UHGV-0046370_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0046370_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0046370_24	COG	COG2369	NA	NA
UHGV-0046370_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0046370_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0046370_25	UniRef90	UniRef90_A0A6N9L3D6	Phage portal protein	NA
UHGV-0046370_25	eggNOG-mapper	445974.CLORAM_02935	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0046370_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0046370_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0046370_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0046370_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0046370_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0046370_26	UniRef90	UniRef90_A0A6N9L4W9	PBSX family phage terminase large subunit	NA
UHGV-0046370_26	eggNOG-mapper	445974.CLORAM_02936	Phage terminase, large subunit, PBSX family	NA
UHGV-0046370_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0046370_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0046370_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0046370_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0046370_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0046370_27	PHROG	phrog_2412	NA	unknown function
UHGV-0046370_27	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0046370_27	eggNOG-mapper	1125712.HMPREF1316_1524	NA	NA
UHGV-0046370_27	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0046370_27	Structural annotation	PF18932	NA	NA
UHGV-0046370_28	PHROG	phrog_9479	NA	unknown function
UHGV-0046370_28	Structural annotation	PF15529	NA	NA
UHGV-0046370_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0046370_30	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0046370_30	UniRef90	UniRef90_R6DKE7	ParB domain-containing protein	NA
UHGV-0046370_30	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0046370_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0046370_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0046370_30	Pfam	PF14386	NA	DUF4417
UHGV-0046370_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0046370_30	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0046370_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0046370_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0046370_32	eggNOG-mapper	1211844.CBLM010000016_gene1520	NA	NA
UHGV-0046370_32	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-0046370_33	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0046370_33	UniRef90	UniRef90_A0A6N9L4W3	NA	NA
UHGV-0046370_33	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0046370_33	Pfam	PF06356	NA	DUF1064
UHGV-0046370_33	Structural annotation	PF06356	NA	NA
UHGV-0046370_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0046370_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0046370_34	UniRef90	UniRef90_A0A6N9L4V1	Single-stranded DNA-binding protein	NA
UHGV-0046370_34	eggNOG-mapper	428126.CLOSPI_02450	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0046370_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0046370_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0046370_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0046370_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0046370_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0046370_37	PHROG	phrog_2715	NA	unknown function
UHGV-0046370_37	eggNOG-mapper	642492.Clole_0950	NA	NA
UHGV-0046370_37	Structural annotation	PF18406	NA	NA
UHGV-0046370_41	PHROG	phrog_22292	NA	unknown function
UHGV-0046370_41	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-0046370_43	PHROG	phrog_4019	NA	unknown function
UHGV-0046370_46	PHROG	phrog_4856	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0046370_46	UniRef90	UniRef90_E2NR83	MazG domain-containing protein	NA
UHGV-0046370_46	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0046370_46	Structural annotation	MF_01019, NF002747, COG0140	NA	NA
UHGV-0046370_47	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0046370_47	eggNOG-mapper	1118057.CAGX01000058_gene96	Transcriptional regulator	NA
UHGV-0046370_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0046370_47	Structural annotation	PF09681, NF033788, COG0640	NA	NA
UHGV-0046370_48	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0046370_48	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0046370_48	UniRef90	UniRef90_UPI0014317E61	recombinase RecT	NA
UHGV-0046370_48	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0046370_48	Pfam	PF03837	RecT family	RecT
UHGV-0046370_48	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0046370_48	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0046370_48	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0046370_49	UniRef90	UniRef90_A0A412KEL9	XRE family transcriptional regulator	NA
UHGV-0046370_49	eggNOG-mapper	742738.HMPREF9460_00730	NA	NA
UHGV-0046370_49	Pfam	PF17827	PrmC N-terminal domain	PrmC_N
UHGV-0046370_50	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046370_50	UniRef90	UniRef90_UPI0014313337	YqaJ viral recombinase family protein	NA
UHGV-0046370_50	eggNOG-mapper	857293.CAAU_0780	YqaJ-like viral recombinase domain	NA
UHGV-0046370_50	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0046370_50	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0046370_50	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0046370_50	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0046370_52	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0046370_52	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0046370_52	UniRef90	UniRef90_UPI001C38B6C0	phage antirepressor KilAC domain-containing protein	NA
UHGV-0046370_52	eggNOG-mapper	1232452.BAIB02000007_gene1603	BRO family, N-terminal domain	NA
UHGV-0046370_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0046370_52	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0046370_52	COG	COG3617	Prophage antirepressor	NA
UHGV-0046370_52	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0046370_53	UniRef90	UniRef90_UPI001CF844D1	NA	NA
UHGV-0046370_53	eggNOG-mapper	257314.LJ_1456	NA	NA
UHGV-0046370_53	Pfam	PF05339	NA	DUF739
UHGV-0046370_53	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0046370_53	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0046370_54	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0046370_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0046370_54	UniRef90	UniRef90_A0A6N9L4Y4	Helix-turn-helix domain-containing protein	NA
UHGV-0046370_54	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-0046370_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046370_54	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0046370_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0046370_54	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA