UHGV-0046384

Genome information

Genome length 70,103 bps

CDS count 81

Completeness 94.62% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046384
vOTU ID	vOTU-012702
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_10927
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.62% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.04
Jumbo phage	No

Genome content
Genome length	70,103 bps
GC content	43.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	89.51%
Average CDS length	778.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046384_2	Structural annotation	PF17457	NA	NA
UHGV-0046384_3	PHROG	phrog_24381	NA	unknown function
UHGV-0046384_6	Structural annotation	PF20338	NA	NA
UHGV-0046384_7	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0046384_7	UniRef90	UniRef90_A0A840TPV7	NA	NA
UHGV-0046384_8	eggNOG-mapper	1347393.HG726021_gene517	NA	NA
UHGV-0046384_8	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0046384_9	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0046384_9	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0046384_9	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-0046384_9	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0046384_9	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0046384_9	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0046384_9	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-0046384_10	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0046384_10	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0046384_10	UniRef90	UniRef90_A0A3R6HTW1	Recombinase	NA
UHGV-0046384_10	eggNOG-mapper	619693.HMPREF6745_2490	Recombinase, phage RecT family	NA
UHGV-0046384_10	Pfam	PF03837	RecT family	RecT
UHGV-0046384_10	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0046384_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0046384_10	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0046384_12	Structural annotation	PF18300, COG5475	NA	NA
UHGV-0046384_13	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0046384_13	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046384_13	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-0046384_13	eggNOG-mapper	1121285.AUFK01000002_gene9	nuclear chromosome segregation	NA
UHGV-0046384_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0046384_13	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0046384_15	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0046384_15	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0046384_15	UniRef90	UniRef90_A0A3E5E957	dUTPase domain-containing protein	NA
UHGV-0046384_15	eggNOG-mapper	1122128.AUEE01000007_gene1660	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0046384_15	Pfam	PF00692	dUTPase	dUTPase
UHGV-0046384_15	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0046384_15	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0046384_16	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046384_16	UniRef90	UniRef90_A0A414YGC0	Recombinase	NA
UHGV-0046384_16	eggNOG-mapper	435591.BDI_0857	Bacteriophage Lambda NinG protein	NA
UHGV-0046384_16	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0046384_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0046384_16	Structural annotation	PF05766	NA	NA
UHGV-0046384_18	PHROG	phrog_16858	NA	unknown function
UHGV-0046384_18	UniRef90	UniRef90_A0A3D6B2E4	ArsR family transcriptional regulator	NA
UHGV-0046384_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0046384_19	UniRef90	UniRef90_A0A3R5ZKQ5	XRE family transcriptional regulator	NA
UHGV-0046384_19	eggNOG-mapper	886379.AEWI01000013_gene2144	Helix-turn-helix XRE-family like proteins	NA
UHGV-0046384_19	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0046384_19	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0046384_20	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0046384_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0046384_20	UniRef90	UniRef90_A0A3E5E8Z5	Site-specific integrase	NA
UHGV-0046384_20	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0046384_20	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0046384_20	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0046384_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0046384_20	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0046384_20	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0046384_21	Structural annotation	PF04492	NA	NA
UHGV-0046384_22	Structural annotation	PF04480, NF007294, COG3727	NA	NA
UHGV-0046384_25	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046384_25	UniRef90	UniRef90_A0A3E5E2Y4	HNH endonuclease	NA
UHGV-0046384_25	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0046384_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0046384_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0046384_25	Structural annotation	COG1403	NA	NA
UHGV-0046384_28	Structural annotation	PF10623	NA	NA
UHGV-0046384_30	PHROG	phrog_8684	NA	unknown function
UHGV-0046384_30	UniRef90	UniRef90_K1SIW5	YopX domain-containing protein	NA
UHGV-0046384_30	eggNOG-mapper	1450694.BTS2_0501	YopX protein	NA
UHGV-0046384_30	Pfam	PF09643	YopX protein	YopX
UHGV-0046384_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0046384_32	Structural annotation	PF12286	NA	NA
UHGV-0046384_34	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-0046384_37	Structural annotation	PF18300	NA	NA
UHGV-0046384_42	UniRef90	UniRef90_UPI001C386AEC	helix-turn-helix domain-containing protein	NA
UHGV-0046384_42	eggNOG-mapper	411901.BACCAC_01202	sequence-specific DNA binding	NA
UHGV-0046384_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0046384_43	Structural annotation	PF02805	NA	NA
UHGV-0046384_44	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0046384_48	PHROG	phrog_14770	NA	unknown function
UHGV-0046384_48	UniRef90	UniRef90_UPI001C395052	strawberry notch C-terminal domain-containing protein	NA
UHGV-0046384_48	eggNOG-mapper	1121098.HMPREF1534_01128	CRISPR-associated helicase, Cas3	NA
UHGV-0046384_48	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0046384_48	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-0046384_48	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-0046384_48	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0046384_48	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0046384_50	PHROG	phrog_38431	NA	unknown function
UHGV-0046384_50	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0046384_50	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0046384_51	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0046384_53	UniRef90	UniRef90_UPI0010756222	MgtC/SapB family protein	NA
UHGV-0046384_54	PHROG	phrog_1281	NA	unknown function
UHGV-0046384_54	UniRef90	UniRef90_A0A6A7W1F4	NA	NA
UHGV-0046384_54	eggNOG-mapper	393921.HQ45_06855	Phage-associated protein	NA
UHGV-0046384_54	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0046384_54	COG	COG3600	NA	NA
UHGV-0046384_57	KOfam	K06330	cotH; spore coat protein H	NA
UHGV-0046384_57	PHROG	phrog_27151	NA	unknown function
UHGV-0046384_57	UniRef90	UniRef90_UPI0013D1DF92	CotH kinase family protein	NA
UHGV-0046384_57	eggNOG-mapper	1233951.IO90_08605	CotH kinase protein	NA
UHGV-0046384_57	Pfam	PF08757	CotH kinase protein	CotH
UHGV-0046384_57	Structural annotation	PF08757, COG5337	NA	NA
UHGV-0046384_58	Structural annotation	PF17994	NA	NA
UHGV-0046384_59	PHROG	phrog_22135	NA	unknown function
UHGV-0046384_59	Structural annotation	PF17212	NA	NA
UHGV-0046384_61	PHROG	phrog_26635	NA	unknown function
UHGV-0046384_61	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0046384_62	PHROG	phrog_22323	NA	unknown function
UHGV-0046384_62	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-0046384_63	PHROG	phrog_156	portal protein	head and packaging
UHGV-0046384_63	eggNOG-mapper	563031.HMPREF0666_01151	NA	NA
UHGV-0046384_63	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0046384_65	Structural annotation	PF02368	NA	NA
UHGV-0046384_68	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0046384_68	UniRef90	UniRef90_UPI001C38A690	terminase	NA
UHGV-0046384_68	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0046384_68	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0046384_68	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0046384_69	PHROG	phrog_32516	NA	unknown function
UHGV-0046384_69	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-0046384_69	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0046384_71	PHROG	phrog_27246	NA	unknown function
UHGV-0046384_73	PHROG	phrog_20732	NA	unknown function
UHGV-0046384_73	UniRef90	UniRef90_UPI000C787A6F	phage holin family protein	NA
UHGV-0046384_73	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-0046384_73	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0046384_74	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0046384_74	PHROG	phrog_822	amidase	lysis
UHGV-0046384_74	UniRef90	UniRef90_K1SWX0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046384_74	eggNOG-mapper	1127696.HMPREF9134_00800	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046384_74	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0046384_74	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0046384_74	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0046384_75	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-0046384_76	UniRef90	UniRef90_A0A3E5E9F8	DNA-binding protein	NA
UHGV-0046384_76	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0046384_77	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0046384_77	UniRef90	UniRef90_A0A3E5E9I6	Class I SAM-dependent methyltransferase	NA
UHGV-0046384_77	eggNOG-mapper	1121098.HMPREF1534_01090	Methyltransferase domain	NA
UHGV-0046384_77	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0046384_77	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-0046384_77	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0046384_79	PHROG	phrog_8684	NA	unknown function
UHGV-0046384_79	UniRef90	UniRef90_UPI001C01CE13	YopX family protein	NA
UHGV-0046384_79	eggNOG-mapper	1235799.C818_02660	YopX protein	NA
UHGV-0046384_79	Pfam	PF09643	YopX protein	YopX
UHGV-0046384_79	Structural annotation	PF09643, TIGR01671	NA	NA