UHGV-0046454

Genome information

Genome length 22,111 bps

CDS count 29

Completeness 55.48% (medium-quality)

geNomad score 0.9598

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046454
vOTU ID	vOTU-030174
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_30248
BioSample	SAMEA2159032
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9598
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-5.83
Jumbo phage	No

Genome content
Genome length	22,111 bps
GC content	53.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	84.84%
Average CDS length	647.48 bps
tRNA count	2
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046454_1	KOfam	K01938	fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]	NA
UHGV-0046454_1	UniRef90	UniRef90_A0A645IJG1	Formate--tetrahydrofolate ligase	NA
UHGV-0046454_1	eggNOG-mapper	1410624.JNKK01000007_gene1809	Formate--tetrahydrofolate ligase	NA
UHGV-0046454_1	Pfam	PF01268	Formate--tetrahydrofolate ligase	FTHFS
UHGV-0046454_1	COG	COG2759	Formyltetrahydrofolate synthetase	NA
UHGV-0046454_2	UniRef90	UniRef90_A0A316NK61	BIG2 domain-containing protein	NA
UHGV-0046454_4	UniRef90	UniRef90_A0A662S5F4	Glutamine amidotransferase type-2 domain-containing protein	NA
UHGV-0046454_4	eggNOG-mapper	1401067.HMPREF0872_03875	NA	NA
UHGV-0046454_4	Structural annotation	PF13230, MF_01931, TIGR01134, COG0121	NA	NA
UHGV-0046454_5	PHROG	phrog_16683	NA	unknown function
UHGV-0046454_5	UniRef90	UniRef90_A0A1Q6KT11	Zinc-binding protein	NA
UHGV-0046454_5	eggNOG-mapper	1203606.HMPREF1526_01758	Putative amidoligase enzyme	NA
UHGV-0046454_5	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0046454_5	Structural annotation	PF12224, MF_01609, NF010042, COG2170	NA	NA
UHGV-0046454_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0046454_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0046454_8	UniRef90	UniRef90_R6IDK3	Single-stranded DNA-binding protein	NA
UHGV-0046454_8	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0046454_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0046454_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0046454_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0046454_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0046454_8	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0046454_9	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0046454_9	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0046454_10	KOfam	K09935	ybiA; N-glycosidase YbiA [EC:3.2.2.-]	NA
UHGV-0046454_10	PHROG	phrog_1017	NA	unknown function
UHGV-0046454_10	eggNOG-mapper	1384065.JAGS01000001_gene1069	NA	NA
UHGV-0046454_10	Pfam	PF08719	NADAR domain	NADAR
UHGV-0046454_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0046454_11	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0046454_11	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-0046454_11	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0046454_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0046454_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0046454_11	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0046454_14	PHROG	phrog_156	portal protein	head and packaging
UHGV-0046454_14	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0046454_14	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0046454_15	eggNOG-mapper	755731.Clo1100_2435	NA	NA
UHGV-0046454_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0046454_17	UniRef90	UniRef90_A0A8J6JH37	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0046454_17	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0046454_17	Pfam	PF13287	Fn3 associated	Fn3_assoc
UHGV-0046454_17	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0046454_18	PHROG	phrog_1863	NA	unknown function
UHGV-0046454_18	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0046454_19	PHROG	phrog_10091	holin	lysis
UHGV-0046454_19	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-0046454_19	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0046454_19	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0046454_19	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0046454_19	COG	COG5546	NA	NA
UHGV-0046454_19	Structural annotation	COG5546	NA	NA
UHGV-0046454_20	eggNOG-mapper	693746.OBV_01730	NA	NA
UHGV-0046454_20	Structural annotation	PF11650	NA	NA
UHGV-0046454_22	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0046454_22	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0046454_22	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0046454_23	PHROG	phrog_13518	NA	unknown function
UHGV-0046454_26	PHROG	phrog_31538	NA	unknown function
UHGV-0046454_26	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0046454_27	PHROG	phrog_13589	NA	unknown function
UHGV-0046454_27	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0046454_28	PHROG	phrog_6465	tail protein	tail
UHGV-0046454_28	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-0046454_29	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0046454_29	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0046454_29	UniRef90	UniRef90_A0A174TSA4	DNA-binding protein	NA
UHGV-0046454_29	eggNOG-mapper	411483.FAEPRAA2165_02030	Belongs to the ParB family	NA
UHGV-0046454_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0046454_29	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0046454_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0046454_29	Structural annotation	PF02195, PF07506, MF_02015, TIGR04285, COG1475	NA	NA