UHGV-0046480

Genome information

vOTU vOTU-061981

Genome length 56,767 bps

CDS count 88

Completeness 90.73% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046480
vOTU ID	vOTU-061981
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_204
BioSample	SAMD00036386
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.73% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.36
Jumbo phage	No

Genome content
Genome length	56,767 bps
GC content	39.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	88
CDS density	90.80%
Average CDS length	588.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046480_3	PHROG	phrog_15773	NA	unknown function
UHGV-0046480_5	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0046480_5	UniRef90	UniRef90_UPI001F22CE34	ATP-binding protein	NA
UHGV-0046480_5	eggNOG-mapper	981336.F944_01707	AAA domain	NA
UHGV-0046480_5	Pfam	PF13479	AAA domain	AAA_24
UHGV-0046480_5	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0046480_5	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0046480_6	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046480_6	UniRef90	UniRef90_L0P6F5	HNH endonuclease	NA
UHGV-0046480_6	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0046480_6	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0046480_6	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0046480_6	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0046480_6	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0046480_7	Structural annotation	PF12684, TIGR04256, COG5377	NA	NA
UHGV-0046480_8	UniRef90	UniRef90_F3QQV6	Conserved domain protein	NA
UHGV-0046480_8	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0046480_9	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0046480_9	eggNOG-mapper	1121100.JCM6294_522	NA	NA
UHGV-0046480_9	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0046480_10	PHROG	phrog_19572	NA	unknown function
UHGV-0046480_10	UniRef90	UniRef90_UPI001E510457	NA	NA
UHGV-0046480_10	eggNOG-mapper	411901.BACCAC_01211	NA	NA
UHGV-0046480_10	Pfam	PF14902	NA	DUF4494
UHGV-0046480_10	Structural annotation	PF14902	NA	NA
UHGV-0046480_11	AcrCatalog	cluster_25385	NA	NA
UHGV-0046480_13	eggNOG-mapper	411901.BACCAC_02347	NA	NA
UHGV-0046480_15	PHROG	phrog_824	NA	unknown function
UHGV-0046480_15	UniRef90	UniRef90_UPI0004E5D9FF	VRR-NUC domain-containing protein	NA
UHGV-0046480_15	eggNOG-mapper	1122985.HMPREF1991_01533	VRR-NUC domain	NA
UHGV-0046480_15	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0046480_15	Structural annotation	PF08774	NA	NA
UHGV-0046480_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0046480_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046480_17	UniRef90	UniRef90_UPI001C0264A2	HNH endonuclease	NA
UHGV-0046480_17	eggNOG-mapper	762968.HMPREF9441_00533	HNH endonuclease	NA
UHGV-0046480_17	Pfam	PF19808	NA	DUF6291
UHGV-0046480_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0046480_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0046480_18	PHROG	phrog_16304	NA	unknown function
UHGV-0046480_18	UniRef90	UniRef90_A0A174JNZ9	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	NA
UHGV-0046480_18	eggNOG-mapper	435590.BVU_2853	NA	NA
UHGV-0046480_18	Pfam	PF19808	NA	DUF6291
UHGV-0046480_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0046480_19	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0046480_19	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0046480_19	UniRef90	UniRef90_A0A1Y3YRG2	DNA helicase	NA
UHGV-0046480_19	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-0046480_19	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0046480_19	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0046480_19	COG	COG0305	Replicative DNA helicase	NA
UHGV-0046480_19	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0046480_22	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0046480_22	UniRef90	UniRef90_A0A412Z5E6	PAPS_reduct domain-containing protein	NA
UHGV-0046480_22	eggNOG-mapper	1347393.HG726021_gene401	NA	NA
UHGV-0046480_22	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0046480_22	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0046480_25	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0046480_25	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0046480_25	UniRef90	UniRef90_UPI0015F9FF37	N-6 DNA methylase	NA
UHGV-0046480_25	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0046480_25	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0046480_25	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0046480_25	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0046480_25	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0046480_26	UniRef90	UniRef90_A0A139JVB3	NA	NA
UHGV-0046480_26	eggNOG-mapper	742727.HMPREF9447_04873	NA	NA
UHGV-0046480_26	Pfam	PF04448	NA	DUF551
UHGV-0046480_26	Structural annotation	NF041588	NA	NA
UHGV-0046480_30	PHROG	phrog_28300	NA	unknown function
UHGV-0046480_34	eggNOG-mapper	411901.BACCAC_01173	NA	NA
UHGV-0046480_35	PHROG	phrog_12005	NA	unknown function
UHGV-0046480_36	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-0046480_37	PHROG	phrog_874	NA	unknown function
UHGV-0046480_37	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0046480_37	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0046480_39	PHROG	phrog_98	NA	unknown function
UHGV-0046480_39	UniRef90	UniRef90_UPI000E57ECE2	YopX family protein	NA
UHGV-0046480_39	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-0046480_39	Pfam	PF09643	YopX protein	YopX
UHGV-0046480_39	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0046480_39	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0046480_41	UniRef90	UniRef90_H2A0H1	Putative nuclease	NA
UHGV-0046480_41	eggNOG-mapper	213774.R9R2E1_9CAUD	HNH endonuclease	NA
UHGV-0046480_41	Structural annotation	TIGR01453	NA	NA
UHGV-0046480_42	Structural annotation	PF08928	NA	NA
UHGV-0046480_44	Structural annotation	PF02699, MF_01354, NF005100, COG5475	NA	NA
UHGV-0046480_45	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-0046480_45	Structural annotation	PF13384, TIGR04381	NA	NA
UHGV-0046480_46	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0046480_46	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0046480_47	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046480_47	UniRef90	UniRef90_A0A015X9X2	NUMOD4 motif family protein	NA
UHGV-0046480_47	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0046480_47	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0046480_47	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0046480_47	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0046480_47	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0046480_47	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0046480_48	PHROG	phrog_38431	NA	unknown function
UHGV-0046480_48	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0046480_48	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0046480_49	PHROG	phrog_34053	NA	unknown function
UHGV-0046480_50	PHROG	phrog_28898	NA	unknown function
UHGV-0046480_50	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-0046480_50	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-0046480_50	Structural annotation	PF10781	NA	NA
UHGV-0046480_51	PHROG	phrog_31654	NA	unknown function
UHGV-0046480_51	eggNOG-mapper	762968.HMPREF9441_00554	NA	NA
UHGV-0046480_52	PHROG	phrog_16490	NA	unknown function
UHGV-0046480_52	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-0046480_52	eggNOG-mapper	762968.HMPREF9441_00555	NA	NA
UHGV-0046480_53	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0046480_53	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0046480_53	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0046480_54	PHROG	phrog_26448	NA	unknown function
UHGV-0046480_54	eggNOG-mapper	762984.HMPREF9445_00190	NA	NA
UHGV-0046480_54	Pfam	PF20647	NA	DUF6808
UHGV-0046480_54	Structural annotation	PF20647	NA	NA
UHGV-0046480_56	PHROG	phrog_20787	virion structural protein	head and packaging
UHGV-0046480_57	eggNOG-mapper	449673.BACSTE_02041	Leucine-rich repeat (LRR) protein	NA
UHGV-0046480_57	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0046480_57	Structural annotation	PF02784	NA	NA
UHGV-0046480_59	Structural annotation	PF14607, MF_01372, NF038393	NA	NA
UHGV-0046480_60	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0046480_60	PHROG	phrog_894	endolysin	lysis
UHGV-0046480_60	UniRef90	UniRef90_A0A1Q6HQG5	Peptidase M15	NA
UHGV-0046480_60	eggNOG-mapper	411901.BACCAC_01119	Peptidase M15	NA
UHGV-0046480_60	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0046480_60	COG	COG3108	NA	NA
UHGV-0046480_60	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0046480_62	UniRef90	UniRef90_UPI000E53ECB8	phage holin family protein	NA
UHGV-0046480_62	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-0046480_62	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0046480_62	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-0046480_63	eggNOG-mapper	272559.BF9343_2359	NA	NA
UHGV-0046480_66	eggNOG-mapper	99179.B5TR91_9CAUD	peptidoglycan catabolic process	NA
UHGV-0046480_67	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-0046480_68	PHROG	phrog_38044	NA	unknown function
UHGV-0046480_68	UniRef90	UniRef90_UPI001E5F740B	NA	NA
UHGV-0046480_68	eggNOG-mapper	1236514.BAKL01000085_gene4861	NA	NA
UHGV-0046480_68	Structural annotation	PF04862, NF038128	NA	NA
UHGV-0046480_69	PHROG	phrog_26568	NA	unknown function
UHGV-0046480_69	eggNOG-mapper	1122971.BAME01000119_gene6178	NA	NA
UHGV-0046480_69	Structural annotation	PF02927, PF19266	NA	NA
UHGV-0046480_70	PHROG	phrog_22157	NA	unknown function
UHGV-0046480_70	eggNOG-mapper	411476.BACOVA_03941	NA	NA
UHGV-0046480_70	Structural annotation	PF05629, PF17642, PF06605, TIGR01646, COG3157	NA	NA
UHGV-0046480_71	PHROG	phrog_26233	NA	unknown function
UHGV-0046480_71	eggNOG-mapper	411476.BACOVA_03937	NA	NA
UHGV-0046480_72	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0046480_72	PHROG	phrog_26705	NA	unknown function
UHGV-0046480_72	UniRef90	UniRef90_A0A414Q7X1	Phage tail tape measure protein	NA
UHGV-0046480_72	eggNOG-mapper	1122971.BAME01000119_gene6173	Phage-related minor tail protein	NA
UHGV-0046480_72	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0046480_73	KOfam	K19159	yefM; antitoxin YefM	NA
UHGV-0046480_73	PHROG	phrog_10078	NA	unknown function
UHGV-0046480_73	UniRef90	UniRef90_B0NMA5	Antitoxin	NA
UHGV-0046480_73	eggNOG-mapper	449673.BACSTE_00563	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0046480_73	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0046480_73	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0046480_73	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0046480_74	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-0046480_74	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0046480_74	UniRef90	UniRef90_B0NMA6	Putative mRNA interferase YoeB	NA
UHGV-0046480_74	eggNOG-mapper	449673.BACSTE_00564	addiction module toxin, Txe YoeB family	NA
UHGV-0046480_74	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-0046480_74	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-0046480_74	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-0046480_74	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-0046480_75	eggNOG-mapper	449673.BACSTE_00845	NA	NA
UHGV-0046480_76	PHROG	phrog_26299	NA	unknown function
UHGV-0046480_76	eggNOG-mapper	411476.BACOVA_03935	NA	NA
UHGV-0046480_77	PHROG	phrog_6195	tail protein	tail
UHGV-0046480_77	UniRef90	UniRef90_A0A374UT65	ABC transporter	NA
UHGV-0046480_77	eggNOG-mapper	449673.BACSTE_00574	NA	NA
UHGV-0046480_78	PHROG	phrog_25857	NA	unknown function
UHGV-0046480_79	PHROG	phrog_24272	NA	unknown function
UHGV-0046480_79	eggNOG-mapper	449673.BACSTE_00576	NA	NA
UHGV-0046480_79	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0046480_80	PHROG	phrog_23418	NA	unknown function
UHGV-0046480_80	eggNOG-mapper	449673.BACSTE_00577	NA	NA
UHGV-0046480_81	eggNOG-mapper	449673.BACSTE_00578	NA	NA
UHGV-0046480_81	Structural annotation	PF20459	NA	NA
UHGV-0046480_83	PHROG	phrog_10	major head protein	head and packaging
UHGV-0046480_83	UniRef90	UniRef90_UPI001106E187	phage major capsid protein	NA
UHGV-0046480_83	eggNOG-mapper	449673.BACSTE_00580	Phage capsid family	NA
UHGV-0046480_83	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0046480_83	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0046480_83	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0046480_83	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0046480_84	KOfam	K06904	NA	NA
UHGV-0046480_84	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0046480_84	UniRef90	UniRef90_B0NM79	Phage prohead protease, HK97 family	NA
UHGV-0046480_84	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-0046480_84	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0046480_84	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0046480_84	COG	COG3740	Phage head maturation protease	NA
UHGV-0046480_84	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0046480_85	PHROG	phrog_12	portal protein	head and packaging
UHGV-0046480_85	UniRef90	UniRef90_UPI001485B311	phage portal protein	NA
UHGV-0046480_85	eggNOG-mapper	449673.BACSTE_00582	Phage portal protein	NA
UHGV-0046480_85	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0046480_85	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0046480_86	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0046480_86	UniRef90	UniRef90_UPI0011064D5D	phage terminase large subunit	NA
UHGV-0046480_86	eggNOG-mapper	449673.BACSTE_00583	domain protein	NA
UHGV-0046480_86	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0046480_86	COG	COG5410	NA	NA
UHGV-0046480_86	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0046480_87	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0046480_87	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0046480_87	UniRef90	UniRef90_B0NM82	Terminase small subunit	NA
UHGV-0046480_87	eggNOG-mapper	449673.BACSTE_00584	Terminase small subunit	NA
UHGV-0046480_87	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0046480_87	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0046480_87	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0046480_88	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0046480_88	PHROG	phrog_1	integrase	integration and excision
UHGV-0046480_88	UniRef90	UniRef90_B0NM83	Site-specific recombinase, phage integrase family	NA
UHGV-0046480_88	eggNOG-mapper	449673.BACSTE_00585	Phage integrase SAM-like domain	NA
UHGV-0046480_88	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0046480_88	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0046480_88	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0046480_88	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA