UHGV-0046484

Genome information

vOTU vOTU-061979

Genome length 41,268 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046484
vOTU ID	vOTU-061979
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_195
BioSample	SAMD00036386
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	32
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	89.23
Jumbo phage	No

Genome content
Genome length	41,268 bps
GC content	38.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	88.10%
Average CDS length	745.90 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046484_1	KOfam	K14059	int; integrase	NA
UHGV-0046484_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0046484_1	UniRef90	UniRef90_A0A380KNP6	Phage integrase	NA
UHGV-0046484_1	eggNOG-mapper	1314.HKU360_00749	Phage integrase family	NA
UHGV-0046484_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0046484_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0046484_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0046484_2	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0046484_2	UniRef90	UniRef90_A0A3E2SGZ3	NA	NA
UHGV-0046484_2	eggNOG-mapper	1423724.BAMM01000020_gene1794	NA	NA
UHGV-0046484_2	Pfam	PF12978	NA	DUF3862
UHGV-0046484_2	Structural annotation	PF12978	NA	NA
UHGV-0046484_3	PHROG	phrog_87	metallo-protease	other
UHGV-0046484_3	UniRef90	UniRef90_A0A1C3SRC4	Peptidase_M78 domain-containing protein	NA
UHGV-0046484_3	eggNOG-mapper	173707.Q938N7_9CAUD	Pfam:Peptidase_M78	NA
UHGV-0046484_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0046484_3	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-0046484_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0046484_4	UniRef90	UniRef90_A0A3E2SGZ5	XRE family transcriptional regulator	NA
UHGV-0046484_4	eggNOG-mapper	157924.Q7Y4M0_9CAUD	sequence-specific DNA binding	NA
UHGV-0046484_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046484_4	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0046484_5	UniRef90	UniRef90_A0A3E2SH08	XRE family transcriptional regulator	NA
UHGV-0046484_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046484_5	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0046484_7	Structural annotation	PF17950	NA	NA
UHGV-0046484_9	PHROG	phrog_904	excisionase	integration and excision
UHGV-0046484_9	UniRef90	UniRef90_A0A368UDS7	Excisionase	NA
UHGV-0046484_9	eggNOG-mapper	1069533.Sinf_0769	NA	NA
UHGV-0046484_9	Structural annotation	PF20063	NA	NA
UHGV-0046484_11	PHROG	phrog_5666	NA	unknown function
UHGV-0046484_11	UniRef90	UniRef90_A0A3S5DNE5	NA	NA
UHGV-0046484_11	eggNOG-mapper	764299.STRIC_0083	Transcriptional	NA
UHGV-0046484_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0046484_12	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0046484_12	PHROG	phrog_1499	NA	unknown function
UHGV-0046484_12	UniRef90	UniRef90_A0A4D6A7Z1	AAA_23 domain-containing protein	NA
UHGV-0046484_12	eggNOG-mapper	1123315.AUIP01000003_gene213	AAA domain	NA
UHGV-0046484_12	Pfam	PF13476	AAA domain	AAA_23
UHGV-0046484_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0046484_12	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0046484_13	PHROG	phrog_2486	NA	unknown function
UHGV-0046484_13	UniRef90	UniRef90_A0A116NZT0	NA	NA
UHGV-0046484_14	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0046484_14	UniRef90	UniRef90_A0A3S4I583	NA	NA
UHGV-0046484_14	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-0046484_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0046484_14	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0046484_15	PHROG	phrog_2698	NA	unknown function
UHGV-0046484_15	UniRef90	UniRef90_A0A3S4JK96	NA	NA
UHGV-0046484_15	eggNOG-mapper	1123302.KB904182_gene88	NA	NA
UHGV-0046484_15	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0046484_16	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0046484_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0046484_16	UniRef90	UniRef90_A0A447UCK4	DEAD/DEAH box helicase	NA
UHGV-0046484_16	eggNOG-mapper	1123315.AUIP01000003_gene216	helicase	NA
UHGV-0046484_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0046484_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0046484_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0046484_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0046484_16	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0046484_17	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0046484_17	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0046484_17	UniRef90	UniRef90_UPI0018F3CA8A	AAA family ATPase	NA
UHGV-0046484_17	eggNOG-mapper	1123315.AUIP01000003_gene217	Primase C terminal 2 (PriCT-2)	NA
UHGV-0046484_17	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0046484_17	Pfam	PF13481	AAA domain	AAA_25
UHGV-0046484_17	COG	COG3598	RecA-family ATPase	NA
UHGV-0046484_17	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0046484_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0046484_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0046484_19	UniRef90	UniRef90_A0A3S4IZ61	Phage associated protein	NA
UHGV-0046484_19	eggNOG-mapper	1123304.AQYA01000037_gene201	crossover junction endodeoxyribonuclease RusA	NA
UHGV-0046484_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0046484_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0046484_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0046484_20	Structural annotation	PF20432, MF_00535, NF040507, COG1476	NA	NA
UHGV-0046484_21	PHROG	phrog_3745	NA	unknown function
UHGV-0046484_21	UniRef90	UniRef90_A0A447UCM2	Phage associated protein	NA
UHGV-0046484_22	PHROG	phrog_1489	NA	unknown function
UHGV-0046484_22	UniRef90	UniRef90_A0A447UCQ8	Phage associated protein	NA
UHGV-0046484_23	PHROG	phrog_30456	NA	unknown function
UHGV-0046484_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0046484_24	UniRef90	UniRef90_A0A1H7XRF7	Phage transcriptional activator, RinA family	NA
UHGV-0046484_24	eggNOG-mapper	1069533.Sinf_0781	Transcriptional regulator, RinA family	NA
UHGV-0046484_24	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0046484_24	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0046484_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0046484_25	UniRef90	UniRef90_A0A6F9N2I6	Terminase small subunit (Fragment)	NA
UHGV-0046484_25	eggNOG-mapper	764299.STRIC_2128	Terminase small subunit	NA
UHGV-0046484_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0046484_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0046484_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0046484_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0046484_26	UniRef90	UniRef90_A0A4D6A2Q5	Terminase, large subunit	NA
UHGV-0046484_26	eggNOG-mapper	1158614.I592_02273	Terminase RNAseH like domain	NA
UHGV-0046484_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0046484_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0046484_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0046484_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0046484_26	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0046484_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0046484_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0046484_27	UniRef90	UniRef90_A0A6F9N2U9	Phage portal protein	NA
UHGV-0046484_27	eggNOG-mapper	1123318.KB904586_gene510	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0046484_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0046484_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0046484_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0046484_28	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0046484_28	UniRef90	UniRef90_A0A4D6A5U5	Phage_Mu_F domain-containing protein	NA
UHGV-0046484_28	eggNOG-mapper	1123302.KB904182_gene74	Phage Mu protein F like protein	NA
UHGV-0046484_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0046484_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0046484_28	COG	COG2369	NA	NA
UHGV-0046484_28	Structural annotation	PF04233, PF18812, TIGR01641, COG2369	NA	NA
UHGV-0046484_30	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0046484_30	UniRef90	UniRef90_A0A4D6A3V9	Capsid and scaffold protein	NA
UHGV-0046484_30	eggNOG-mapper	1123318.KB904586_gene506	NA	NA
UHGV-0046484_30	Pfam	PF14265	NA	DUF4355
UHGV-0046484_30	Structural annotation	PF14265	NA	NA
UHGV-0046484_31	PHROG	phrog_544	major head protein	head and packaging
UHGV-0046484_31	UniRef90	UniRef90_A0A2I1YI87	Phage capsid protein	NA
UHGV-0046484_31	eggNOG-mapper	1123318.KB904586_gene505	NA	NA
UHGV-0046484_31	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0046484_32	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0046484_32	UniRef90	UniRef90_A0A7Z7QSL9	NA	NA
UHGV-0046484_32	eggNOG-mapper	1314.HKU360_01486	Phage gp6-like head-tail connector protein	NA
UHGV-0046484_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0046484_32	Structural annotation	PF05135	NA	NA
UHGV-0046484_33	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0046484_33	UniRef90	UniRef90_A0A4V0EDU8	NA	NA
UHGV-0046484_33	eggNOG-mapper	1314.HKU360_01485	NA	NA
UHGV-0046484_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0046484_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0046484_34	UniRef90	UniRef90_A0A3S4I184	NA	NA
UHGV-0046484_34	eggNOG-mapper	1123302.KB904182_gene66	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0046484_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0046484_34	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0046484_34	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0046484_35	PHROG	phrog_176	tail terminator	connector
UHGV-0046484_35	UniRef90	UniRef90_J7MAY0	NA	NA
UHGV-0046484_35	eggNOG-mapper	1123302.KB904182_gene65	NA	NA
UHGV-0046484_35	Structural annotation	PF06141, MF_00281, COG0016	NA	NA
UHGV-0046484_36	PHROG	phrog_238	major tail protein	tail
UHGV-0046484_36	UniRef90	UniRef90_A0A2I1YI77	Phage major tail protein, TP901-1 family	NA
UHGV-0046484_36	eggNOG-mapper	1123302.KB904182_gene64	domain, Protein	NA
UHGV-0046484_36	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0046484_36	COG	COG5492	NA	NA
UHGV-0046484_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0046484_37	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0046484_37	UniRef90	UniRef90_A0A380IMK2	NA	NA
UHGV-0046484_37	eggNOG-mapper	1123302.KB904182_gene63	Phage tail assembly chaperone protein, TAC	NA
UHGV-0046484_37	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0046484_37	Structural annotation	PF12363	NA	NA
UHGV-0046484_38	PHROG	phrog_1204	tail protein	tail
UHGV-0046484_38	UniRef90	UniRef90_A0A4D6A819	Tail length tape-measure protein	NA
UHGV-0046484_38	eggNOG-mapper	1158614.I592_02260	nuclear chromosome segregation	NA
UHGV-0046484_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0046484_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0046484_38	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0046484_38	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0046484_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0046484_39	UniRef90	UniRef90_A0A447UCS7	NA	NA
UHGV-0046484_39	eggNOG-mapper	1123302.KB904182_gene61	Phage tail protein	NA
UHGV-0046484_39	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0046484_39	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0046484_40	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0046484_40	PHROG	phrog_3095	tail protein with endopeptidase activity	other
UHGV-0046484_40	UniRef90	UniRef90_UPI001BDAF44F	phage tail protein	NA
UHGV-0046484_40	eggNOG-mapper	1123302.KB904182_gene60	Prophage endopeptidase tail	NA
UHGV-0046484_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0046484_40	COG	COG1511	NA	NA
UHGV-0046484_41	PHROG	phrog_372	tail protein	tail
UHGV-0046484_41	UniRef90	UniRef90_UPI001BD95387	NA	NA
UHGV-0046484_41	eggNOG-mapper	888049.HMPREF8578_0253	NA	NA
UHGV-0046484_41	Pfam	PF05895	NA	DUF859
UHGV-0046484_41	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0046484_42	PHROG	phrog_1060	NA	unknown function
UHGV-0046484_42	UniRef90	UniRef90_UPI001BDB5057	NA	NA
UHGV-0046484_42	eggNOG-mapper	1321820.HMPREF1983_00919	NA	NA
UHGV-0046484_42	Pfam	PF07104	NA	DUF1366
UHGV-0046484_42	Structural annotation	PF07104	NA	NA
UHGV-0046484_43	PHROG	phrog_1567	NA	unknown function
UHGV-0046484_43	UniRef90	UniRef90_A0A139RNG9	NA	NA
UHGV-0046484_44	PHROG	phrog_18008	NA	unknown function
UHGV-0046484_45	PHROG	phrog_608	holin	lysis
UHGV-0046484_45	UniRef90	UniRef90_S5R5H3	Holin	NA
UHGV-0046484_45	eggNOG-mapper	1000588.HMPREF9965_1685	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0046484_45	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0046484_45	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0046484_45	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0046484_46	PHROG	phrog_998	endolysin	lysis
UHGV-0046484_46	UniRef90	UniRef90_A0A1H0Y4B3	Peptidoglycan hydrolase	NA
UHGV-0046484_46	eggNOG-mapper	936154.STP_1586	lysozyme activity	NA
UHGV-0046484_46	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0046484_46	Pfam	PF16775	Target recognition domain of lytic exoenzyme	ZoocinA_TRD
UHGV-0046484_46	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0046484_46	Structural annotation	PF16775, PF05382, NF008096, COG0791	NA	NA
UHGV-0046484_47	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0046484_47	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0046484_47	UniRef90	UniRef90_A0A139R478	NA	NA
UHGV-0046484_47	eggNOG-mapper	1314.HKU360_01232	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0046484_47	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0046484_47	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0046484_47	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0046484_48	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0046484_48	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0046484_48	UniRef90	UniRef90_A0A4D6AWX3	HicB-like domain-containing protein	NA
UHGV-0046484_48	eggNOG-mapper	1314.HKU360_01233	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0046484_48	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0046484_48	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0046484_48	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0046484_49	KOfam	K08659	pepDA, pepDB; dipeptidase [EC:3.4.-.-]	NA
UHGV-0046484_49	UniRef90	UniRef90_F5WZY7	Dipeptidase	NA
UHGV-0046484_49	eggNOG-mapper	1069533.Sinf_1301	Dipeptidase	NA
UHGV-0046484_49	Pfam	PF03577	Peptidase family C69	Peptidase_C69
UHGV-0046484_49	NCBIFam	NF033678.1	C69 family dipeptidase	NA
UHGV-0046484_49	COG	COG4690	Dipeptidase	NA