UHGV-0046543

Genome information

Genome length 37,190 bps

CDS count 65

Completeness 98.27% (high-quality)

geNomad score 0.9507

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046543
vOTU ID	vOTU-078189
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3371
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.27% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9507
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.69
Jumbo phage	No

Genome content
Genome length	37,190 bps
GC content	34.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.16%
Average CDS length	532.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046543_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0046543_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0046543_2	UniRef90	UniRef90_UPI001C259486	recombinase family protein	NA
UHGV-0046543_2	eggNOG-mapper	903814.ELI_4654	Resolvase, N terminal domain	NA
UHGV-0046543_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0046543_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0046543_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0046543_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0046543_2	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0046543_3	PHROG	phrog_9418	NA	unknown function
UHGV-0046543_3	eggNOG-mapper	658655.HMPREF0988_00910	NA	NA
UHGV-0046543_3	Structural annotation	PF10233	NA	NA
UHGV-0046543_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0046543_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0046543_4	UniRef90	UniRef90_A0A6N2XYT0	HTH-type transcriptional regulator SinR	NA
UHGV-0046543_4	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0046543_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0046543_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046543_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0046543_6	UniRef90	UniRef90_A0A7U9CJR6	HTH cro/C1-type domain-containing protein	NA
UHGV-0046543_6	eggNOG-mapper	1235800.C819_02266	Helix-turn-helix XRE-family like proteins	NA
UHGV-0046543_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0046543_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0046543_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0046543_8	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0046543_8	UniRef90	UniRef90_UPI001D08DCF8	ORF6C domain-containing protein	NA
UHGV-0046543_8	eggNOG-mapper	1232446.BAIE02000011_gene1630	ORF6C domain	NA
UHGV-0046543_8	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0046543_8	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0046543_8	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0046543_8	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0046543_13	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0046543_13	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0046543_13	UniRef90	UniRef90_UPI000E4FA7A6	site-specific DNA-methyltransferase	NA
UHGV-0046543_13	eggNOG-mapper	1314.HKU360_01238	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0046543_13	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0046543_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0046543_13	COG	COG0863	DNA modification methylase	NA
UHGV-0046543_13	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0046543_15	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046543_15	UniRef90	UniRef90_G9R0Z0	HNHc domain-containing protein	NA
UHGV-0046543_15	eggNOG-mapper	360911.EAT1b_0007	NUMOD4 motif	NA
UHGV-0046543_15	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0046543_15	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0046543_16	KOfam	K03744	lemA; LemA protein	NA
UHGV-0046543_16	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0046543_16	UniRef90	UniRef90_UPI000E519A27	LemA family protein	NA
UHGV-0046543_16	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0046543_16	Pfam	PF04011	LemA family	LemA
UHGV-0046543_16	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0046543_16	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0046543_17	PHROG	phrog_3886	NA	unknown function
UHGV-0046543_17	eggNOG-mapper	1298920.KI911353_gene2686	NA	NA
UHGV-0046543_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0046543_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0046543_18	UniRef90	UniRef90_UPI000E54C62B	tyrosine-type recombinase/integrase	NA
UHGV-0046543_18	eggNOG-mapper	1232449.BAHV02000016_gene1840	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0046543_18	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0046543_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0046543_18	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0046543_18	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0046543_22	UniRef90	UniRef90_UPI00115AD30A	NA	NA
UHGV-0046543_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0046543_26	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046543_26	UniRef90	UniRef90_UPI001D07CE99	HNH endonuclease	NA
UHGV-0046543_26	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0046543_26	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0046543_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0046543_26	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0046543_27	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0046543_27	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0046543_27	eggNOG-mapper	1232446.BAIE02000002_gene815	NA	NA
UHGV-0046543_27	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0046543_28	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0046543_28	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-0046543_28	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0046543_28	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0046543_28	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0046543_29	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0046543_29	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0046543_29	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-0046543_29	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0046543_29	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0046543_29	COG	COG0305	Replicative DNA helicase	NA
UHGV-0046543_29	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0046543_31	UniRef90	UniRef90_G9R105	HIPIP domain-containing protein	NA
UHGV-0046543_32	PHROG	phrog_1828	NA	unknown function
UHGV-0046543_34	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0046543_35	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046543_35	UniRef90	UniRef90_A0A3E3EGW1	HNH endonuclease	NA
UHGV-0046543_35	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0046543_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0046543_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0046543_37	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0046543_37	UniRef90	UniRef90_A0A3E3EG90	RNA polymerase subunit sigma-70	NA
UHGV-0046543_37	eggNOG-mapper	864178.E2ELI1_9CAUD	Phage terminase, small subunit	NA
UHGV-0046543_37	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0046543_37	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0046543_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0046543_38	UniRef90	UniRef90_A0A3E3EH16	Terminase	NA
UHGV-0046543_38	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0046543_38	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0046543_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0046543_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0046543_38	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0046543_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0046543_39	UniRef90	UniRef90_A0A3E3EI59	Phage portal protein	NA
UHGV-0046543_39	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0046543_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0046543_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0046543_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0046543_39	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0046543_40	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0046543_40	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0046543_40	UniRef90	UniRef90_A0A3E3EG77	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0046543_40	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0046543_40	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0046543_40	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0046543_40	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0046543_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0046543_41	UniRef90	UniRef90_A0A3E3EGM4	Phage major capsid protein	NA
UHGV-0046543_41	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0046543_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0046543_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0046543_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0046543_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0046543_42	PHROG	phrog_749	NA	unknown function
UHGV-0046543_42	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-0046543_43	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0046543_43	Structural annotation	PF16467, MF_01457, TIGR01563, COG5614	NA	NA
UHGV-0046543_44	PHROG	phrog_78	tail terminator	connector
UHGV-0046543_44	UniRef90	UniRef90_A0A0Z8IUE1	Prophage pi2 protein 38	NA
UHGV-0046543_44	eggNOG-mapper	1235802.C823_05272	NA	NA
UHGV-0046543_44	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0046543_45	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0046543_45	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0046543_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0046543_45	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0046543_46	PHROG	phrog_88	major tail protein	tail
UHGV-0046543_46	UniRef90	UniRef90_A0A3E3EG64	Phage tail protein	NA
UHGV-0046543_46	eggNOG-mapper	476272.RUMHYD_01477	COG NOG11304 non supervised orthologous group	NA
UHGV-0046543_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0046543_46	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0046543_47	PHROG	phrog_709	NA	unknown function
UHGV-0046543_47	eggNOG-mapper	1392487.JIAD01000001_gene514	NA	NA
UHGV-0046543_47	Structural annotation	PF11836	NA	NA
UHGV-0046543_48	PHROG	phrog_3033	NA	unknown function
UHGV-0046543_49	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0046543_49	UniRef90	UniRef90_A0A3E3EH06	Phage tail tape measure protein	NA
UHGV-0046543_49	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0046543_49	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0046543_49	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0046543_49	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0046543_49	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0046543_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0046543_50	UniRef90	UniRef90_A0A3E3EI44	Phage tail protein	NA
UHGV-0046543_50	eggNOG-mapper	999413.HMPREF1094_02000	phage tail	NA
UHGV-0046543_50	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0046543_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0046543_50	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0046543_51	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0046543_51	UniRef90	UniRef90_A0A3E3EG68	Peptidase S74 domain-containing protein	NA
UHGV-0046543_51	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0046543_51	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0046543_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0046543_51	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0046543_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0046543_51	COG	COG4926	Phage-related protein	NA
UHGV-0046543_51	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0046543_52	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-0046543_54	PHROG	phrog_38707	NA	unknown function
UHGV-0046543_54	eggNOG-mapper	537007.BLAHAN_05239	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0046543_54	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0046543_55	PHROG	phrog_24267	NA	unknown function
UHGV-0046543_55	UniRef90	UniRef90_A0A173T301	Phage-related holin (Lysis protein)	NA
UHGV-0046543_55	eggNOG-mapper	411468.CLOSCI_00188	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0046543_55	COG	COG4675	Phage tail collar domain	NA
UHGV-0046543_56	UniRef90	UniRef90_R7KBG5	Conserved domain protein	NA
UHGV-0046543_57	PHROG	phrog_1382	NA	unknown function
UHGV-0046543_57	Structural annotation	NF040910	NA	NA
UHGV-0046543_58	PHROG	phrog_199	holin	lysis
UHGV-0046543_58	UniRef90	UniRef90_UPI000E414CC9	phage holin family protein	NA
UHGV-0046543_58	eggNOG-mapper	469596.HMPREF9488_01337	Bacteriophage holin family	NA
UHGV-0046543_58	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0046543_58	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0046543_58	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0046543_58	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0046543_59	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0046543_59	PHROG	phrog_1794	amidase	lysis
UHGV-0046543_59	UniRef90	UniRef90_A0A3E3E9Q5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0046543_59	eggNOG-mapper	1286171.EAL2_c06030	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0046543_59	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0046543_59	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0046543_59	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-0046543_62	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046543_62	UniRef90	UniRef90_A0A6B4QZ31	AP2 domain-containing protein	NA
UHGV-0046543_62	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-0046543_62	Pfam	PF21817	CapR homology domain	CapR
UHGV-0046543_62	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0046543_64	UniRef90	UniRef90_UPI00067F15F5	helix-turn-helix domain-containing protein	NA
UHGV-0046543_64	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA