UHGV-0046637

Genome information

Genome length 34,890 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046637
vOTU ID	vOTU-010230
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2229
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.78
Jumbo phage	No

Genome content
Genome length	34,890 bps
GC content	55.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.30%
Average CDS length	577.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046637_1	UniRef90	UniRef90_A0A2X2UIW5	Collagen-binding surface protein	NA
UHGV-0046637_1	eggNOG-mapper	272563.CD630_33920	Cna protein B-type domain	NA
UHGV-0046637_1	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-0046637_2	PHROG	phrog_87	metallo-protease	other
UHGV-0046637_2	UniRef90	UniRef90_A0A416DGX8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0046637_2	eggNOG-mapper	1226322.HMPREF1545_00086	NA	NA
UHGV-0046637_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0046637_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0046637_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0046637_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0046637_3	UniRef90	UniRef90_A0A417TPA6	XRE family transcriptional regulator	NA
UHGV-0046637_3	eggNOG-mapper	755731.Clo1100_0530	transcriptional regulator	NA
UHGV-0046637_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046637_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0046637_3	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0046637_4	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0046637_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0046637_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0046637_5	UniRef90	UniRef90_A0A417BRQ8	XRE family transcriptional regulator	NA
UHGV-0046637_5	eggNOG-mapper	397291.C804_05455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0046637_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046637_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0046637_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0046637_6	UniRef90	UniRef90_UPI000D1F26C7	helix-turn-helix domain-containing protein	NA
UHGV-0046637_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0046637_7	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0046637_7	UniRef90	UniRef90_A0A3E2XWX9	XRE family transcriptional regulator	NA
UHGV-0046637_7	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0046637_9	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0046637_9	UniRef90	UniRef90_A0A396Q9C4	Helix-turn-helix domain-containing protein	NA
UHGV-0046637_9	eggNOG-mapper	1007096.BAGW01000033_gene1617	ROK family	NA
UHGV-0046637_9	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0046637_9	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0046637_9	Structural annotation	PF13730, NF033789, COG1846	NA	NA
UHGV-0046637_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0046637_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0046637_10	UniRef90	UniRef90_A0A396QGM5	DNA helicase	NA
UHGV-0046637_10	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0046637_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0046637_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0046637_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0046637_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0046637_11	Structural annotation	PF07870	NA	NA
UHGV-0046637_12	UniRef90	UniRef90_A0A417TN68	HTH_58 domain-containing protein	NA
UHGV-0046637_12	Structural annotation	PF02796	NA	NA
UHGV-0046637_13	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0046637_13	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0046637_13	UniRef90	UniRef90_G4KRS5	AAA_31 domain-containing protein	NA
UHGV-0046637_13	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0046637_13	Pfam	PF13614	AAA domain	AAA_31
UHGV-0046637_13	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0046637_14	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0046637_14	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0046637_14	UniRef90	UniRef90_A0A3E2XWQ0	ParA family protein	NA
UHGV-0046637_14	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0046637_14	Pfam	PF13614	AAA domain	AAA_31
UHGV-0046637_14	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0046637_14	Structural annotation	PF13614, MF_00533, NF041546, COG1192	NA	NA
UHGV-0046637_15	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0046637_15	PHROG	phrog_27290	NA	unknown function
UHGV-0046637_15	UniRef90	UniRef90_A0A3E2XXY6	ParB domain-containing protein	NA
UHGV-0046637_15	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0046637_15	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0046637_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0046637_15	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0046637_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0046637_18	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0046637_18	Structural annotation	PF01446	NA	NA
UHGV-0046637_19	UniRef90	UniRef90_A0A6L5GQ43	Conjugal transfer protein	NA
UHGV-0046637_19	eggNOG-mapper	411469.EUBHAL_01483	Cysteine-rich KTR	NA
UHGV-0046637_19	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0046637_20	Structural annotation	PF15188	NA	NA
UHGV-0046637_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0046637_21	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046637_21	UniRef90	UniRef90_A0A396QGN3	HNH endonuclease	NA
UHGV-0046637_21	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0046637_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0046637_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0046637_22	PHROG	phrog_1066	NA	unknown function
UHGV-0046637_22	eggNOG-mapper	1203606.HMPREF1526_01333	NA	NA
UHGV-0046637_22	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0046637_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0046637_24	UniRef90	UniRef90_A0A396Q7Z1	Terminase large subunit	NA
UHGV-0046637_24	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-0046637_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0046637_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0046637_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0046637_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0046637_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0046637_25	UniRef90	UniRef90_A0A396QRU6	Phage portal protein	NA
UHGV-0046637_25	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0046637_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0046637_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0046637_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0046637_26	KOfam	K06904	NA	NA
UHGV-0046637_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0046637_26	UniRef90	UniRef90_A0A396QDF0	HK97 family phage prohead protease	NA
UHGV-0046637_26	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0046637_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0046637_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0046637_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0046637_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0046637_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0046637_27	UniRef90	UniRef90_A0A417VTC4	Phage major capsid protein	NA
UHGV-0046637_27	eggNOG-mapper	1203606.HMPREF1526_01339	Phage capsid family	NA
UHGV-0046637_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0046637_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0046637_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0046637_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0046637_28	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0046637_28	UniRef90	UniRef90_A0A396Q9S6	Phage gp6-like head-tail connector protein	NA
UHGV-0046637_28	eggNOG-mapper	1209989.TepiRe1_2602	Phage gp6-like head-tail connector protein	NA
UHGV-0046637_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0046637_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0046637_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0046637_29	PHROG	phrog_25	head closure Hc1	connector
UHGV-0046637_29	UniRef90	UniRef90_A0A396Q875	Head-tail adaptor protein	NA
UHGV-0046637_29	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0046637_29	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0046637_29	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0046637_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0046637_30	UniRef90	UniRef90_A0A396Q789	HK97 gp10 family phage protein	NA
UHGV-0046637_30	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0046637_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0046637_31	PHROG	phrog_525	NA	unknown function
UHGV-0046637_31	Pfam	PF20765	NA	DUF6838
UHGV-0046637_31	Structural annotation	PF20765	NA	NA
UHGV-0046637_32	PHROG	phrog_1480	tail sheath	tail
UHGV-0046637_32	UniRef90	UniRef90_A0A396Q9E2	Phage tail protein	NA
UHGV-0046637_32	eggNOG-mapper	1203606.HMPREF1526_01344	Phage tail sheath C-terminal domain	NA
UHGV-0046637_32	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0046637_32	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0046637_33	PHROG	phrog_365	tail protein	tail
UHGV-0046637_33	UniRef90	UniRef90_A0A396QGP2	Terminase	NA
UHGV-0046637_33	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-0046637_33	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0046637_33	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0046637_34	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0046637_34	eggNOG-mapper	1203606.HMPREF1526_01346	NA	NA
UHGV-0046637_34	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0046637_36	PHROG	phrog_23464	NA	unknown function
UHGV-0046637_36	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0046637_36	COG	COG5283	Phage-related tail protein	NA
UHGV-0046637_37	PHROG	phrog_7972	NA	unknown function
UHGV-0046637_37	UniRef90	UniRef90_R6PWP1	Phage-related protein	NA
UHGV-0046637_37	eggNOG-mapper	1203606.HMPREF1526_01348	phage tail tape measure protein	NA
UHGV-0046637_37	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0046637_38	PHROG	phrog_23201	NA	unknown function
UHGV-0046637_38	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0046637_38	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0046637_38	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0046637_38	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0046637_39	PHROG	phrog_400	tail protein	tail
UHGV-0046637_39	UniRef90	UniRef90_A0A3E2XWU2	CHAP domain-containing protein	NA
UHGV-0046637_39	eggNOG-mapper	1408437.JNJN01000045_gene579	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0046637_39	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0046637_39	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0046637_40	UniRef90	UniRef90_A0A396Q799	CHAP domain-containing protein	NA
UHGV-0046637_40	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0046637_41	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0046637_42	UniRef90	UniRef90_A0A3E2XWS6	NA	NA
UHGV-0046637_42	eggNOG-mapper	318464.IO99_13685	NA	NA
UHGV-0046637_42	Pfam	PF10934	NA	DUF2634
UHGV-0046637_42	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0046637_42	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0046637_43	PHROG	phrog_6	baseplate protein	tail
UHGV-0046637_43	UniRef90	UniRef90_A0A415ZGA0	Baseplate J protein	NA
UHGV-0046637_43	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0046637_43	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0046637_43	COG	COG3299	NA	NA
UHGV-0046637_43	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0046637_44	PHROG	phrog_521	tail protein	tail
UHGV-0046637_44	UniRef90	UniRef90_A0A415ZGE0	NA	NA
UHGV-0046637_44	eggNOG-mapper	536232.CLM_1676	NA	NA
UHGV-0046637_44	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0046637_44	COG	COG3778	NA	NA
UHGV-0046637_44	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0046637_45	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0046637_45	Structural annotation	NF012201	NA	NA
UHGV-0046637_46	PHROG	phrog_18723	NA	unknown function
UHGV-0046637_47	PHROG	phrog_18723	NA	unknown function
UHGV-0046637_48	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0046637_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0046637_48	UniRef90	UniRef90_A0A3E2XWT3	Integrase	NA
UHGV-0046637_48	eggNOG-mapper	1235835.C814_01938	Belongs to the 'phage' integrase family	NA
UHGV-0046637_48	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0046637_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0046637_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0046637_48	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0046637_50	PHROG	phrog_134	NA	unknown function
UHGV-0046637_50	UniRef90	UniRef90_A0A3E2XWU6	XkdX family protein	NA
UHGV-0046637_50	eggNOG-mapper	697281.Mahau_0596	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0046637_50	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0046637_50	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0046637_50	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0046637_51	PHROG	phrog_937	hemolysin	other
UHGV-0046637_51	eggNOG-mapper	478749.BRYFOR_07561	NA	NA
UHGV-0046637_52	PHROG	phrog_297	holin	lysis
UHGV-0046637_52	UniRef90	UniRef90_A0A396Q9G4	Phage holin	NA
UHGV-0046637_52	eggNOG-mapper	935836.JAEL01000005_gene2687	Bacteriophage holin	NA
UHGV-0046637_52	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0046637_52	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0046637_52	COG	COG5546	NA	NA
UHGV-0046637_52	Structural annotation	COG5546	NA	NA
UHGV-0046637_53	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0046637_53	PHROG	phrog_435	endolysin	lysis
UHGV-0046637_53	UniRef90	UniRef90_UPI001D0E5BDE	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046637_53	eggNOG-mapper	1408437.JNJN01000040_gene194	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046637_53	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0046637_53	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0046637_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046637_53	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0046637_54	eggNOG-mapper	883109.HMPREF0380_00597	NA	NA
UHGV-0046637_54	Structural annotation	MF_00637, TIGR01925, COG2172	NA	NA
UHGV-0046637_55	UniRef90	UniRef90_UPI000CF24385	NA	NA
UHGV-0046637_55	Structural annotation	PF14213	NA	NA