UHGV-0046689

Genome information

Genome length 28,673 bps

CDS count 42

Completeness 72.70% (medium-quality)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046689
vOTU ID	vOTU-031758
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4225
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.09
Jumbo phage	No

Genome content
Genome length	28,673 bps
GC content	34.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.51%
Average CDS length	634.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046689_1	PHROG	phrog_16267	NA	unknown function
UHGV-0046689_1	eggNOG-mapper	702450.CUW_0547	NA	NA
UHGV-0046689_1	COG	COG4926	Phage-related protein	NA
UHGV-0046689_1	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0046689_2	PHROG	phrog_1194	NA	unknown function
UHGV-0046689_2	eggNOG-mapper	702450.CUW_0546	NA	NA
UHGV-0046689_2	Pfam	PF20458	NA	DUF6711
UHGV-0046689_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0046689_3	PHROG	phrog_1401	NA	unknown function
UHGV-0046689_3	UniRef90	UniRef90_A0A6I1BH53	PRK domain-containing protein	NA
UHGV-0046689_3	eggNOG-mapper	702450.CUW_0545	NA	NA
UHGV-0046689_3	Structural annotation	PF07761	NA	NA
UHGV-0046689_4	PHROG	phrog_2566	NA	unknown function
UHGV-0046689_4	UniRef90	UniRef90_A0A7V8IA60	NA	NA
UHGV-0046689_4	eggNOG-mapper	702450.CUW_0544	NA	NA
UHGV-0046689_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0046689_5	UniRef90	UniRef90_A0A1M6MXK4	Phage-related protein	NA
UHGV-0046689_5	eggNOG-mapper	702450.CUW_0543	phage tail tape measure protein	NA
UHGV-0046689_5	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0046689_5	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0046689_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0046689_6	PHROG	phrog_2066	NA	unknown function
UHGV-0046689_6	eggNOG-mapper	702450.CUW_0542	NA	NA
UHGV-0046689_8	PHROG	phrog_158	major tail protein	tail
UHGV-0046689_8	UniRef90	UniRef90_UPI0005906553	tail protein	NA
UHGV-0046689_8	eggNOG-mapper	702450.CUW_0540	Phage tail tube protein, TTP	NA
UHGV-0046689_8	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0046689_8	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0046689_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0046689_10	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0046689_12	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0046689_12	UniRef90	UniRef90_UPI0018A91D0C	phage head-tail connector protein	NA
UHGV-0046689_12	eggNOG-mapper	509191.AEDB02000075_gene2795	Phage gp6-like head-tail connector protein	NA
UHGV-0046689_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0046689_13	PHROG	phrog_267	major head protein	head and packaging
UHGV-0046689_13	eggNOG-mapper	1123405.AUMM01000039_gene151	P22 coat protein-protein 5 domain protein	NA
UHGV-0046689_14	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0046689_14	UniRef90	UniRef90_UPI0018AC5FE9	NA	NA
UHGV-0046689_14	Pfam	PF14265	NA	DUF4355
UHGV-0046689_14	Structural annotation	PF14265	NA	NA
UHGV-0046689_15	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0046689_15	UniRef90	UniRef90_UPI0018AA2D4E	minor capsid protein	NA
UHGV-0046689_15	eggNOG-mapper	702450.CUW_0533	cell adhesion	NA
UHGV-0046689_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0046689_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0046689_15	COG	COG2369	NA	NA
UHGV-0046689_15	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0046689_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0046689_16	UniRef90	UniRef90_A0A6I3NCL2	Phage portal protein	NA
UHGV-0046689_16	eggNOG-mapper	702450.CUW_0532	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0046689_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0046689_16	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0046689_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0046689_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0046689_17	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0046689_17	UniRef90	UniRef90_A0A6G2CD67	PBSX family phage terminase large subunit	NA
UHGV-0046689_17	eggNOG-mapper	702450.CUW_0531	Phage terminase, large subunit, PBSX family	NA
UHGV-0046689_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0046689_17	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0046689_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0046689_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0046689_17	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0046689_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0046689_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0046689_18	UniRef90	UniRef90_A0A6G2CEL1	Terminase small subunit	NA
UHGV-0046689_18	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0046689_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0046689_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0046689_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0046689_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0046689_19	Structural annotation	PF06530, MF_00245, NF008895, COG1595	NA	NA
UHGV-0046689_21	UniRef90	UniRef90_A0A6I3NF12	Helix-turn-helix domain-containing protein	NA
UHGV-0046689_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046689_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0046689_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0046689_22	UniRef90	UniRef90_A0A6I3NDD5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0046689_22	eggNOG-mapper	702450.CUW_0526	Endodeoxyribonuclease RusA	NA
UHGV-0046689_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0046689_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0046689_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0046689_23	PHROG	phrog_398	NA	unknown function
UHGV-0046689_23	UniRef90	UniRef90_UPI0006C0DACF	putative HNHc nuclease	NA
UHGV-0046689_23	eggNOG-mapper	702450.CUW_0525	Putative HNHc nuclease	NA
UHGV-0046689_23	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0046689_23	Structural annotation	PF16784	NA	NA
UHGV-0046689_24	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0046689_24	UniRef90	UniRef90_A0A6G2CD86	NA	NA
UHGV-0046689_24	eggNOG-mapper	702450.CUW_0524	NA	NA
UHGV-0046689_24	Pfam	PF06378	NA	DUF1071
UHGV-0046689_24	Structural annotation	PF06378, TIGR00607, COG4712	NA	NA
UHGV-0046689_25	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046689_25	eggNOG-mapper	1150474.JQJI01000011_gene55	YqaJ viral recombinase family	NA
UHGV-0046689_25	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0046689_29	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0046689_29	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0046689_29	UniRef90	UniRef90_A0A6G2CEM3	AbrB family transcriptional regulator	NA
UHGV-0046689_29	eggNOG-mapper	702450.CUW_0519	toxin-antitoxin pair type II binding	NA
UHGV-0046689_29	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0046689_29	Structural annotation	PF04014, TIGR01439, COG2002	NA	NA
UHGV-0046689_31	PHROG	phrog_9804	NA	unknown function
UHGV-0046689_31	UniRef90	UniRef90_A0A6I3NG77	Inhibitor_G39P domain-containing protein	NA
UHGV-0046689_31	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0046689_31	Structural annotation	PF11417	NA	NA
UHGV-0046689_32	PHROG	phrog_1163	NA	unknown function
UHGV-0046689_32	UniRef90	UniRef90_A0A844JJY2	Phage_rep_org_N domain-containing protein	NA
UHGV-0046689_32	eggNOG-mapper	702450.CUW_0518	Phage replisome organizer N-terminal	NA
UHGV-0046689_32	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0046689_32	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0046689_32	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0046689_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0046689_32	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0046689_36	UniRef90	UniRef90_A0A6I3NEY3	Excisionase family DNA-binding protein	NA
UHGV-0046689_36	eggNOG-mapper	1121285.AUFK01000009_gene1301	Helix-turn-helix domain	NA
UHGV-0046689_36	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0046689_36	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0046689_36	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0046689_37	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0046689_37	UniRef90	UniRef90_UPI0001CEFFF7	Rha family transcriptional regulator	NA
UHGV-0046689_37	eggNOG-mapper	702450.CUW_0513	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0046689_37	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0046689_37	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0046689_37	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0046689_37	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0046689_37	Structural annotation	PF10552, PF10547, COG3617	NA	NA
UHGV-0046689_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0046689_38	UniRef90	UniRef90_UPI0002EDF995	helix-turn-helix transcriptional regulator	NA
UHGV-0046689_38	eggNOG-mapper	702450.CUW_0512	sequence-specific DNA binding	NA
UHGV-0046689_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046689_38	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0046689_39	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0046689_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0046689_39	UniRef90	UniRef90_UPI0001CEFFF5	helix-turn-helix domain-containing protein	NA
UHGV-0046689_39	eggNOG-mapper	702450.CUW_0511	Transcriptional	NA
UHGV-0046689_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0046689_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046689_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0046689_39	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0046689_40	PHROG	phrog_2695	NA	unknown function
UHGV-0046689_40	UniRef90	UniRef90_UPI0001CEFFF4	SIR2 family protein	NA
UHGV-0046689_40	eggNOG-mapper	702450.CUW_0510	SIR2-like domain	NA
UHGV-0046689_40	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-0046689_40	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-0046689_40	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0046689_40	Structural annotation	PF13289	NA	NA
UHGV-0046689_41	PHROG	phrog_87	metallo-protease	other
UHGV-0046689_41	UniRef90	UniRef90_UPI0001CEFFF3	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0046689_41	eggNOG-mapper	702450.CUW_0509	IrrE N-terminal-like domain	NA
UHGV-0046689_41	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0046689_41	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0046689_42	KOfam	K14059	int; integrase	NA
UHGV-0046689_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0046689_42	UniRef90	UniRef90_A0A6G2CHJ4	Tyrosine-type recombinase/integrase	NA
UHGV-0046689_42	eggNOG-mapper	702450.CUW_0508	Phage integrase family	NA
UHGV-0046689_42	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0046689_42	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0046689_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0046689_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0046689_42	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA