UHGV-0046698

Genome information

Genome length 36,108 bps

CDS count 53

Completeness 95.73% (high-quality)

geNomad score 0.9674

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046698
vOTU ID	vOTU-074489
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4241
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.73% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9674
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.34
Jumbo phage	No

Genome content
Genome length	36,108 bps
GC content	42.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.82%
Average CDS length	646.59 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046698_1	KOfam	K14059	int; integrase	NA
UHGV-0046698_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0046698_1	UniRef90	UniRef90_UPI0011DD4C1D	site-specific integrase	NA
UHGV-0046698_1	eggNOG-mapper	1033744.CAEL01000029_gene1311	Belongs to the 'phage' integrase family	NA
UHGV-0046698_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0046698_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0046698_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0046698_1	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0046698_2	UniRef90	UniRef90_A0A848R8W3	NA	NA
UHGV-0046698_2	eggNOG-mapper	1462527.CCDM010000001_gene2477	NA	NA
UHGV-0046698_2	Pfam	PF16729	NA	DUF5067
UHGV-0046698_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0046698_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0046698_3	UniRef90	UniRef90_UPI0011DCBA07	LexA family transcriptional regulator	NA
UHGV-0046698_3	eggNOG-mapper	879308.HMPREF9130_0437	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-0046698_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046698_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0046698_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0046698_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0046698_4	UniRef90	UniRef90_UPI0019606295	NA	NA
UHGV-0046698_4	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0046698_4	Pfam	PF05339	NA	DUF739
UHGV-0046698_5	PHROG	phrog_7338	NA	unknown function
UHGV-0046698_5	UniRef90	UniRef90_UPI0011DD9B93	helix-turn-helix domain-containing protein	NA
UHGV-0046698_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0046698_5	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0046698_9	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0046698_9	UniRef90	UniRef90_UPI000838B17E	siphovirus Gp157 family protein	NA
UHGV-0046698_9	eggNOG-mapper	879308.HMPREF9130_0420	Siphovirus Gp157	NA
UHGV-0046698_9	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0046698_9	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0046698_10	eggNOG-mapper	1121947.AUHK01000002_gene921	NA	NA
UHGV-0046698_12	PHROG	phrog_10048	NA	unknown function
UHGV-0046698_12	eggNOG-mapper	1111134.HMPREF1253_1200	NA	NA
UHGV-0046698_12	Structural annotation	PF06420, TIGR00607, COG5055	NA	NA
UHGV-0046698_13	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0046698_13	UniRef90	UniRef90_A0A8H2M658	NA	NA
UHGV-0046698_13	eggNOG-mapper	1416760.AYMS01000012_gene884	NA	NA
UHGV-0046698_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0046698_14	PHROG	phrog_9804	NA	unknown function
UHGV-0046698_14	UniRef90	UniRef90_A0A3A9I1A3	Inhibitor_G39P domain-containing protein	NA
UHGV-0046698_14	eggNOG-mapper	742740.HMPREF9474_03118	Loader and inhibitor of phage G40P	NA
UHGV-0046698_14	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0046698_14	Structural annotation	PF11417	NA	NA
UHGV-0046698_16	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0046698_16	UniRef90	UniRef90_UPI0008391DB7	VRR-NUC domain-containing protein	NA
UHGV-0046698_16	eggNOG-mapper	1111134.HMPREF1253_0391	VRR_NUC	NA
UHGV-0046698_16	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0046698_17	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0046698_17	UniRef90	UniRef90_UPI000E715344	class I SAM-dependent methyltransferase	NA
UHGV-0046698_17	eggNOG-mapper	1054460.SPPN_00315	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0046698_17	PADLOC	oMTase_00019	orphan methyltransferase	RM
UHGV-0046698_17	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0046698_17	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0046698_17	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0046698_19	PHROG	phrog_715	MazG-like pyrophosphatase	other
UHGV-0046698_19	UniRef90	UniRef90_UPI000837CD9F	MazG-like family protein	NA
UHGV-0046698_19	eggNOG-mapper	879308.HMPREF9130_1225	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0046698_19	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0046698_23	eggNOG-mapper	632112.C1KFT3_9CAUD	NA	NA
UHGV-0046698_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0046698_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0046698_24	UniRef90	UniRef90_UPI0008382008	single-stranded DNA-binding protein	NA
UHGV-0046698_24	eggNOG-mapper	862517.HMPREF9225_0062	Single-stranded DNA-binding protein	NA
UHGV-0046698_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0046698_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0046698_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0046698_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0046698_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0046698_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0046698_26	UniRef90	UniRef90_UPI00164C1230	RNA polymerase subunit sigma-24	NA
UHGV-0046698_26	eggNOG-mapper	862517.HMPREF9225_1655	NA	NA
UHGV-0046698_27	PHROG	phrog_10390	NA	unknown function
UHGV-0046698_27	UniRef90	UniRef90_UPI001EF98B10	NA	NA
UHGV-0046698_27	eggNOG-mapper	679192.HMPREF9013_1310	NA	NA
UHGV-0046698_27	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0046698_27	COG	COG3600	NA	NA
UHGV-0046698_27	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0046698_28	eggNOG-mapper	1227268.HMPREF1552_00029	NA	NA
UHGV-0046698_29	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0046698_29	UniRef90	UniRef90_UPI000C781863	phage terminase small subunit	NA
UHGV-0046698_29	eggNOG-mapper	1292035.H476_1020	DNA packaging	NA
UHGV-0046698_29	NCBIFam	NF041373.1	HGGxSTG domain-containing protein	NA
UHGV-0046698_29	COG	COG5484	NA	NA
UHGV-0046698_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0046698_30	PHROG	phrog_29775	NA	unknown function
UHGV-0046698_30	UniRef90	UniRef90_C2CFY2	Phage terminase, large subunit, PBSX family	NA
UHGV-0046698_30	eggNOG-mapper	525255.HMPREF0077_0392	Terminase-like family	NA
UHGV-0046698_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0046698_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0046698_30	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0046698_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0046698_31	UniRef90	UniRef90_A0A1W1UZ76	Phage portal protein, putative, A118 family	NA
UHGV-0046698_31	eggNOG-mapper	525255.HMPREF0077_0391	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0046698_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0046698_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0046698_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0046698_32	UniRef90	UniRef90_A0A845R0G7	Minor capsid protein	NA
UHGV-0046698_32	eggNOG-mapper	525255.HMPREF0077_0390	Phage minor capsid protein 2	NA
UHGV-0046698_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0046698_32	COG	COG2369	NA	NA
UHGV-0046698_32	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0046698_33	Structural annotation	PF11344	NA	NA
UHGV-0046698_34	PHROG	phrog_3675	NA	unknown function
UHGV-0046698_34	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0046698_34	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0046698_34	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0046698_34	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0046698_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0046698_35	UniRef90	UniRef90_U7UI31	Phage minor structural protein GP20	NA
UHGV-0046698_35	eggNOG-mapper	1111134.HMPREF1253_1975	Phage minor structural protein GP20	NA
UHGV-0046698_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0046698_35	Structural annotation	PF06810	NA	NA
UHGV-0046698_36	PHROG	phrog_247	major head protein	head and packaging
UHGV-0046698_36	UniRef90	UniRef90_A0A316L3M0	Phage coat protein	NA
UHGV-0046698_36	eggNOG-mapper	1121344.JHZO01000003_gene972	NA	NA
UHGV-0046698_36	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0046698_36	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0046698_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0046698_38	PHROG	phrog_3366	NA	unknown function
UHGV-0046698_38	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0046698_38	Pfam	PF20536	NA	DUF6751
UHGV-0046698_38	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0046698_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0046698_39	UniRef90	UniRef90_UPI00102FEF69	minor capsid protein	NA
UHGV-0046698_39	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0046698_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0046698_39	Structural annotation	PF11114	NA	NA
UHGV-0046698_40	PHROG	phrog_3266	tail completion	connector
UHGV-0046698_40	UniRef90	UniRef90_UPI000D830B30	chloramphenicol resistance protein	NA
UHGV-0046698_40	eggNOG-mapper	525255.HMPREF0077_0380	NA	NA
UHGV-0046698_40	Structural annotation	PF12691	NA	NA
UHGV-0046698_41	PHROG	phrog_3099	NA	unknown function
UHGV-0046698_41	eggNOG-mapper	428127.EUBDOL_01218	NA	NA
UHGV-0046698_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0046698_42	Structural annotation	PF10666	NA	NA
UHGV-0046698_43	PHROG	phrog_706	NA	unknown function
UHGV-0046698_43	UniRef90	UniRef90_A0A1W1UZ04	Bacteriophage Gp15 protein	NA
UHGV-0046698_43	eggNOG-mapper	573061.Clocel_3534	Bacteriophage Gp15 protein	NA
UHGV-0046698_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0046698_43	Structural annotation	PF06854	NA	NA
UHGV-0046698_44	PHROG	phrog_9696	tail length tape measure protein	tail
UHGV-0046698_44	eggNOG-mapper	1415774.U728_1244	tail tape measure protein	NA
UHGV-0046698_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0046698_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0046698_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0046698_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0046698_45	UniRef90	UniRef90_A0A1W1UYY4	Phage tail protein	NA
UHGV-0046698_45	eggNOG-mapper	365048.Q0H226_9CAUD	Phage tail protein	NA
UHGV-0046698_45	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0046698_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0046698_45	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0046698_46	PHROG	phrog_240	head protein	head and packaging
UHGV-0046698_46	eggNOG-mapper	1430331.EP10_10445	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-0046698_46	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-0046698_46	Structural annotation	PF12571	NA	NA
UHGV-0046698_48	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0046698_48	UniRef90	UniRef90_A0A1W1UYV7	Phage minor structural protein, N-terminal region	NA
UHGV-0046698_48	eggNOG-mapper	1033744.CAEL01000029_gene1269	NA	NA
UHGV-0046698_48	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0046698_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0046698_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0046698_48	COG	COG4926	Phage-related protein	NA
UHGV-0046698_48	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0046698_49	eggNOG-mapper	1033744.CAEL01000029_gene1268	NA	NA
UHGV-0046698_51	PHROG	phrog_199	holin	lysis
UHGV-0046698_51	UniRef90	UniRef90_F9MVG4	Holin family protein	NA
UHGV-0046698_51	eggNOG-mapper	764299.STRIC_0623	Bacteriophage holin family	NA
UHGV-0046698_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0046698_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0046698_52	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0046698_52	PHROG	phrog_1309	endolysin	lysis
UHGV-0046698_52	UniRef90	UniRef90_UPI000D54C973	glucosaminidase domain-containing protein	NA
UHGV-0046698_52	eggNOG-mapper	1118057.CAGX01000058_gene63	mannosyl-glycoprotein	NA
UHGV-0046698_52	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0046698_52	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0046698_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046698_52	Structural annotation	PF01520, PF01832, MF_00562, TIGR02883, NF009355, COG0860, COG1705	NA	NA
UHGV-0046698_53	PHROG	phrog_1299	holin	lysis
UHGV-0046698_53	UniRef90	UniRef90_UPI001C263697	phage holin family protein	NA
UHGV-0046698_53	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2