UHGV-0046753

Genome information

Genome length 35,702 bps

CDS count 54

Completeness 90.93% (high-quality)

geNomad score 0.9732

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046753
vOTU ID	vOTU-067207
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3113
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.93% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9732
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.11
Jumbo phage	No

Genome content
Genome length	35,702 bps
GC content	30.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.24%
Average CDS length	612.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046753_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0046753_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0046753_1	UniRef90	UniRef90_UPI0005B27FAC	recombinase family protein	NA
UHGV-0046753_1	eggNOG-mapper	1347392.CCEZ01000005_gene1203	Resolvase, N terminal domain	NA
UHGV-0046753_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0046753_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0046753_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0046753_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0046753_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0046753_2	PHROG	phrog_87	metallo-protease	other
UHGV-0046753_2	UniRef90	UniRef90_UPI0005B2BE6E	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0046753_2	eggNOG-mapper	1347392.CCEZ01000005_gene1204	Zn peptidase	NA
UHGV-0046753_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0046753_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0046753_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0046753_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0046753_3	UniRef90	UniRef90_UPI0005B256B8	helix-turn-helix domain-containing protein	NA
UHGV-0046753_3	eggNOG-mapper	1347392.CCEZ01000005_gene1205	Helix-turn-helix XRE-family like proteins	NA
UHGV-0046753_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046753_3	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0046753_4	UniRef90	UniRef90_UPI0005B296BA	transcriptional regulator	NA
UHGV-0046753_4	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0046753_4	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0046753_6	PHROG	phrog_27214	NA	unknown function
UHGV-0046753_6	eggNOG-mapper	1286171.EAL2_c19870	NA	NA
UHGV-0046753_10	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0046753_10	UniRef90	UniRef90_UPI0005B25BA0	host-nuclease inhibitor Gam family protein	NA
UHGV-0046753_10	eggNOG-mapper	1347392.CCEZ01000005_gene1212	Bacteriophage Mu Gam like protein	NA
UHGV-0046753_10	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0046753_10	Structural annotation	PF07352	NA	NA
UHGV-0046753_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0046753_11	UniRef90	UniRef90_UPI0005B2A490	AAA family ATPase	NA
UHGV-0046753_11	eggNOG-mapper	1347392.CCEZ01000005_gene1213	AAA domain	NA
UHGV-0046753_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0046753_11	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0046753_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-0046753_12	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0046753_12	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0046753_12	UniRef90	UniRef90_UPI001C9D5B12	DEAD/DEAH box helicase	NA
UHGV-0046753_12	eggNOG-mapper	1347392.CCEZ01000005_gene1214	helicase	NA
UHGV-0046753_12	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0046753_12	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0046753_12	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0046753_12	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0046753_12	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0046753_13	PHROG	phrog_36563	NA	unknown function
UHGV-0046753_13	eggNOG-mapper	1347392.CCEZ01000005_gene1215	ftsk spoiiie	NA
UHGV-0046753_13	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0046753_14	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0046753_14	UniRef90	UniRef90_UPI0005B2B14A	NA	NA
UHGV-0046753_14	eggNOG-mapper	1347392.CCEZ01000005_gene1216	NA	NA
UHGV-0046753_14	Pfam	PF05037	NA	DUF669
UHGV-0046753_14	Structural annotation	PF05037, MF_00720, NF004948, COG2965	NA	NA
UHGV-0046753_15	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0046753_15	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0046753_15	UniRef90	UniRef90_UPI0005B2D030	phage/plasmid primase, P4 family	NA
UHGV-0046753_15	eggNOG-mapper	1347392.CCEZ01000005_gene1217	Phage plasmid primase, P4 family	NA
UHGV-0046753_15	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0046753_15	Pfam	PF19263	NA	DUF5906
UHGV-0046753_15	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0046753_15	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0046753_15	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0046753_15	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0046753_17	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0046753_17	UniRef90	UniRef90_UPI0005B2E5B0	VRR-NUC domain-containing protein	NA
UHGV-0046753_17	eggNOG-mapper	1347392.CCEZ01000005_gene1219	VRR_NUC	NA
UHGV-0046753_17	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0046753_17	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-0046753_21	KOfam	K03090	sigB; RNA polymerase sigma-B factor	NA
UHGV-0046753_21	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0046753_21	UniRef90	UniRef90_UPI0005B2C83A	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0046753_21	eggNOG-mapper	1347392.CCEZ01000005_gene1223	sigma factor activity	NA
UHGV-0046753_21	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0046753_21	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0046753_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0046753_22	PHROG	phrog_3221	NA	unknown function
UHGV-0046753_22	UniRef90	UniRef90_UPI0005B29E9E	NA	NA
UHGV-0046753_22	eggNOG-mapper	1443125.Z962_p0024	NA	NA
UHGV-0046753_22	Pfam	PF12677	NA	DUF3797
UHGV-0046753_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0046753_23	UniRef90	UniRef90_A0A417A9B3	RNA polymerase subunit sigma-70	NA
UHGV-0046753_23	eggNOG-mapper	1347392.CCEZ01000005_gene1225	NA	NA
UHGV-0046753_23	Structural annotation	PF02996	NA	NA
UHGV-0046753_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0046753_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0046753_24	UniRef90	UniRef90_UPI000679441E	DNA cytosine methyltransferase	NA
UHGV-0046753_24	eggNOG-mapper	1347392.CCEZ01000005_gene1226	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0046753_24	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0046753_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0046753_24	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0046753_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0046753_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0046753_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0046753_26	UniRef90	UniRef90_UPI0005B2679B	terminase small subunit	NA
UHGV-0046753_26	eggNOG-mapper	1347392.CCEZ01000005_gene1228	Terminase small subunit	NA
UHGV-0046753_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0046753_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0046753_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0046753_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0046753_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0046753_27	UniRef90	UniRef90_UPI000678A9E5	PBSX family phage terminase large subunit	NA
UHGV-0046753_27	eggNOG-mapper	1347392.CCEZ01000005_gene1229	Phage terminase, large subunit, PBSX family	NA
UHGV-0046753_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0046753_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0046753_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0046753_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0046753_27	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0046753_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0046753_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0046753_28	UniRef90	UniRef90_UPI0005B2997E	phage portal protein	NA
UHGV-0046753_28	eggNOG-mapper	1347392.CCEZ01000005_gene1230	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0046753_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0046753_28	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0046753_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0046753_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0046753_29	UniRef90	UniRef90_UPI0005B2CCDF	minor capsid protein	NA
UHGV-0046753_29	eggNOG-mapper	1347392.CCEZ01000005_gene1231	Phage Mu protein F like protein	NA
UHGV-0046753_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0046753_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0046753_29	COG	COG2369	NA	NA
UHGV-0046753_30	UniRef90	UniRef90_A0A0A8JLZ6	DNA polymerase epsilon subunit	NA
UHGV-0046753_30	eggNOG-mapper	1347392.CCEZ01000005_gene1232	NA	NA
UHGV-0046753_31	PHROG	phrog_1315	NA	unknown function
UHGV-0046753_31	eggNOG-mapper	431943.CKL_4072	NA	NA
UHGV-0046753_31	Structural annotation	TIGR00310	NA	NA
UHGV-0046753_33	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0046753_33	UniRef90	UniRef90_UPI000BE8EE50	NA	NA
UHGV-0046753_33	eggNOG-mapper	1347392.CCEZ01000005_gene1235	NA	NA
UHGV-0046753_33	Pfam	PF14265	NA	DUF4355
UHGV-0046753_33	Structural annotation	PF14265	NA	NA
UHGV-0046753_34	PHROG	phrog_544	major head protein	head and packaging
UHGV-0046753_34	UniRef90	UniRef90_R9C6R9	NA	NA
UHGV-0046753_34	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0046753_34	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0046753_35	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0046753_35	UniRef90	UniRef90_UPI0005B282D3	phage head-tail connector protein	NA
UHGV-0046753_35	eggNOG-mapper	1347392.CCEZ01000005_gene1237	NA	NA
UHGV-0046753_35	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0046753_35	Structural annotation	PF05135	NA	NA
UHGV-0046753_36	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0046753_36	UniRef90	UniRef90_C5WIA4	NA	NA
UHGV-0046753_36	eggNOG-mapper	1232430.CAVG010000113_gene1018	NA	NA
UHGV-0046753_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0046753_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0046753_37	UniRef90	UniRef90_A0A845R6Y4	HK97 gp10 family phage protein	NA
UHGV-0046753_37	eggNOG-mapper	1347392.CCEZ01000005_gene1239	NA	NA
UHGV-0046753_37	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0046753_38	PHROG	phrog_176	tail terminator	connector
UHGV-0046753_38	UniRef90	UniRef90_UPI0005B2B1E6	NA	NA
UHGV-0046753_38	eggNOG-mapper	1347392.CCEZ01000005_gene1240	NA	NA
UHGV-0046753_38	Pfam	PF16807	NA	DUF5072
UHGV-0046753_38	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0046753_39	PHROG	phrog_1407	major tail protein	tail
UHGV-0046753_39	UniRef90	UniRef90_UPI0005B2DBFA	phage major tail protein, TP901-1 family	NA
UHGV-0046753_39	eggNOG-mapper	1347392.CCEZ01000005_gene1241	Phage tail tube protein	NA
UHGV-0046753_39	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0046753_39	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0046753_39	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0046753_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0046753_40	UniRef90	UniRef90_C5WIA0	NA	NA
UHGV-0046753_40	eggNOG-mapper	1347392.CCEZ01000005_gene1242	NA	NA
UHGV-0046753_40	Structural annotation	PF11836	NA	NA
UHGV-0046753_41	PHROG	phrog_7423	NA	unknown function
UHGV-0046753_41	UniRef90	UniRef90_A0A7Z8ZWF9	NA	NA
UHGV-0046753_41	eggNOG-mapper	1347392.CCEZ01000005_gene1243	NA	NA
UHGV-0046753_42	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0046753_42	UniRef90	UniRef90_UPI0006797DA1	phage tail tape measure protein	NA
UHGV-0046753_42	eggNOG-mapper	1347392.CCEZ01000005_gene1244	tail tape measure protein	NA
UHGV-0046753_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0046753_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0046753_42	COG	COG5283	Phage-related tail protein	NA
UHGV-0046753_42	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0046753_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0046753_43	UniRef90	UniRef90_A0A1M5AT59	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-0046753_43	eggNOG-mapper	1347392.CCEZ01000005_gene1245	NA	NA
UHGV-0046753_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0046753_43	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0046753_44	PHROG	phrog_2270	NA	unknown function
UHGV-0046753_44	UniRef90	UniRef90_UPI0005B2E206	phage tail protein	NA
UHGV-0046753_44	eggNOG-mapper	1347392.CCEZ01000005_gene1246	Phage minor structural protein	NA
UHGV-0046753_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0046753_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0046753_44	COG	COG4926	Phage-related protein	NA
UHGV-0046753_45	PHROG	phrog_6130	NA	unknown function
UHGV-0046753_45	eggNOG-mapper	1347392.CCEZ01000005_gene1247	NA	NA
UHGV-0046753_46	PHROG	phrog_17134	NA	unknown function
UHGV-0046753_46	UniRef90	UniRef90_UPI000678B049	BppU family phage baseplate upper protein	NA
UHGV-0046753_46	eggNOG-mapper	1347392.CCEZ01000005_gene1248	NA	NA
UHGV-0046753_46	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0046753_47	eggNOG-mapper	1347392.CCEZ01000005_gene1249	NA	NA
UHGV-0046753_49	PHROG	phrog_134	NA	unknown function
UHGV-0046753_49	UniRef90	UniRef90_A0A844FGS5	XkdX family protein	NA
UHGV-0046753_49	eggNOG-mapper	1347392.CCEZ01000005_gene1251	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0046753_49	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0046753_49	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0046753_50	PHROG	phrog_937	hemolysin	other
UHGV-0046753_50	eggNOG-mapper	1347392.CCEZ01000005_gene1252	NA	NA
UHGV-0046753_51	eggNOG-mapper	1347392.CCEZ01000005_gene1253	NA	NA
UHGV-0046753_52	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0046753_52	PHROG	phrog_435	endolysin	lysis
UHGV-0046753_52	UniRef90	UniRef90_UPI000678B32D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046753_52	eggNOG-mapper	1347392.CCEZ01000005_gene1254	Ami_3	NA
UHGV-0046753_52	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0046753_52	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0046753_52	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0046753_52	Pfam	PF05036	SPOR domain	SPOR
UHGV-0046753_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046753_53	PHROG	phrog_4691	excisionase	integration and excision
UHGV-0046753_53	UniRef90	UniRef90_A0A1T4K5C8	DNA binding domain-containing protein, excisionase family	NA
UHGV-0046753_53	eggNOG-mapper	1347392.CCEZ01000005_gene1255	Helix-turn-helix domain	NA
UHGV-0046753_53	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0046753_53	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0046753_54	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0046753_54	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0046753_54	UniRef90	UniRef90_A0A844FGU8	DNA adenine methylase	NA
UHGV-0046753_54	eggNOG-mapper	1347392.CCEZ01000005_gene1256	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0046753_54	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0046753_54	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0046753_54	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0046753_54	COG	COG0338	DNA-adenine methylase	NA
UHGV-0046753_54	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA