UHGV-0046832

Genome information

Genome length 37,911 bps

CDS count 64

Completeness 58.36% (medium-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046832
vOTU ID	vOTU-015707
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_17894
BioSample	SAMEA2042304
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20
Jumbo phage	No

Genome content
Genome length	37,911 bps
GC content	39.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	85.34%
Average CDS length	507.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046832_1	UniRef90	UniRef90_UPI0012B6E857	virulence RhuM family protein	NA
UHGV-0046832_1	eggNOG-mapper	742726.HMPREF9448_00664	Virulence protein RhuM family	NA
UHGV-0046832_1	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0046832_1	COG	COG3943	NA	NA
UHGV-0046832_2	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0046832_2	UniRef90	UniRef90_UPI001899B00C	terminase family protein	NA
UHGV-0046832_2	eggNOG-mapper	1122985.HMPREF1991_01536	domain protein	NA
UHGV-0046832_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0046832_2	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0046832_2	COG	COG5362	Phage terminase large subunit	NA
UHGV-0046832_2	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0046832_3	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0046832_3	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0046832_3	UniRef90	UniRef90_UPI001899DF0B	terminase small subunit	NA
UHGV-0046832_3	eggNOG-mapper	449673.BACSTE_00584	Terminase small subunit	NA
UHGV-0046832_3	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0046832_3	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0046832_3	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0046832_4	UniRef90	UniRef90_D3I0L9	DNA-binding helix-turn-helix protein	NA
UHGV-0046832_4	eggNOG-mapper	1235815.BAIX01000018_gene1492	DNA-binding helix-turn-helix protein	NA
UHGV-0046832_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0046832_5	UniRef90	UniRef90_Q64ZD0	HTH cro/C1-type domain-containing protein	NA
UHGV-0046832_5	eggNOG-mapper	483215.BACFIN_06547	Helix-turn-helix domain	NA
UHGV-0046832_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0046832_6	eggNOG-mapper	1122971.BAME01000119_gene6171	NA	NA
UHGV-0046832_6	AcrCatalog	cluster_28971	NA	NA
UHGV-0046832_7	PHROG	phrog_1281	NA	unknown function
UHGV-0046832_7	UniRef90	UniRef90_A0A414HR46	NA	NA
UHGV-0046832_7	eggNOG-mapper	1122971.BAME01000119_gene6172	NA	NA
UHGV-0046832_7	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0046832_7	COG	COG3600	NA	NA
UHGV-0046832_7	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0046832_8	Structural annotation	PF09202, NF038251	NA	NA
UHGV-0046832_9	KOfam	K21138	HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2]	NA
UHGV-0046832_9	PHROG	phrog_990	metal-dependent phosphohydrolase	other
UHGV-0046832_9	UniRef90	UniRef90_UPI00189A3ACC	GTP pyrophosphokinase	NA
UHGV-0046832_9	eggNOG-mapper	411901.BACCAC_01146	HD domain	NA
UHGV-0046832_9	COG	COG0317	(p)ppGpp synthase/hydrolase, HD superfamily	NA
UHGV-0046832_9	Structural annotation	PF13328	NA	NA
UHGV-0046832_11	PHROG	phrog_7625	head morphogenesis	head and packaging
UHGV-0046832_11	UniRef90	UniRef90_A5ZE37	Conserved domain protein	NA
UHGV-0046832_11	eggNOG-mapper	411901.BACCAC_01148	NA	NA
UHGV-0046832_11	Structural annotation	PF06152, TIGR00691, COG2357	NA	NA
UHGV-0046832_12	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0046832_12	PHROG	phrog_32779	NA	unknown function
UHGV-0046832_12	UniRef90	UniRef90_UPI0018982589	collagen-like protein	NA
UHGV-0046832_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0046832_12	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0046832_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-0046832_13	UniRef90	UniRef90_UPI00189BD5A7	phage portal protein	NA
UHGV-0046832_13	eggNOG-mapper	411901.BACCAC_01152	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0046832_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0046832_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0046832_14	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0046832_14	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0046832_14	UniRef90	UniRef90_UPI001E5795BD	phage antirepressor KilAC domain-containing protein	NA
UHGV-0046832_14	eggNOG-mapper	1236504.HMPREF2132_11510	BRO family, N-terminal domain	NA
UHGV-0046832_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0046832_14	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0046832_14	COG	COG3617	Prophage antirepressor	NA
UHGV-0046832_14	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0046832_15	PHROG	phrog_12305	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0046832_15	eggNOG-mapper	226185.EF_0112	ParB-like nuclease domain	NA
UHGV-0046832_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0046832_17	eggNOG-mapper	1401078.HMPREF2140_05050	NA	NA
UHGV-0046832_20	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0046832_20	PHROG	phrog_5696	NA	unknown function
UHGV-0046832_20	UniRef90	UniRef90_A0A6L5XAE6	N-6 DNA methylase	NA
UHGV-0046832_20	eggNOG-mapper	908612.HMPREF9720_2193	COG NOG31012 non supervised orthologous group	NA
UHGV-0046832_20	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0046832_20	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0046832_20	Structural annotation	COG0286	NA	NA
UHGV-0046832_22	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0046832_22	UniRef90	UniRef90_UPI00189BF84F	NA	NA
UHGV-0046832_22	eggNOG-mapper	1121100.JCM6294_545	NA	NA
UHGV-0046832_22	Pfam	PF14359	NA	DUF4406
UHGV-0046832_22	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0046832_23	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0046832_23	UniRef90	UniRef90_D1W986	MazG nucleotide pyrophosphohydrolase domain protein	NA
UHGV-0046832_23	eggNOG-mapper	585502.HMPREF0645_2606	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0046832_23	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0046832_23	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0046832_23	Structural annotation	PF12643, MF_01020, NF002747, COG1694	NA	NA
UHGV-0046832_24	UniRef90	UniRef90_UPI001898A249	NA	NA
UHGV-0046832_24	eggNOG-mapper	1300143.CCAV010000001_gene1293	NA	NA
UHGV-0046832_24	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0046832_24	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0046832_25	PHROG	phrog_874	NA	unknown function
UHGV-0046832_25	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0046832_25	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0046832_28	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0046832_28	UniRef90	UniRef90_UPI00189A29B0	SAM-dependent methyltransferase	NA
UHGV-0046832_28	eggNOG-mapper	619693.HMPREF6745_2501	Methyltransferase domain	NA
UHGV-0046832_28	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0046832_28	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0046832_28	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-0046832_28	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0046832_29	PHROG	phrog_32914	NA	unknown function
UHGV-0046832_30	Structural annotation	PF02699, MF_00085, TIGR00037, COG0231	NA	NA
UHGV-0046832_32	KOfam	K07488	K07488; transposase	NA
UHGV-0046832_32	PHROG	phrog_25593	NA	unknown function
UHGV-0046832_32	UniRef90	UniRef90_UPI000AE2927C	IS1595 family transposase	NA
UHGV-0046832_32	eggNOG-mapper	762984.HMPREF9445_03041	ISXO2-like transposase domain	NA
UHGV-0046832_32	Pfam	PF12760	Transposase zinc-ribbon domain	Zn_Tnp_IS1595
UHGV-0046832_32	COG	COG3677	Transposase InsA	NA
UHGV-0046832_35	PHROG	phrog_17873	NA	unknown function
UHGV-0046832_36	PHROG	phrog_32914	NA	unknown function
UHGV-0046832_37	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-0046832_37	eggNOG-mapper	997884.HMPREF1068_02208	NA	NA
UHGV-0046832_37	Structural annotation	PF13489, NF000468, COG2263	NA	NA
UHGV-0046832_38	PHROG	phrog_11564	DNA methyltransferase	other
UHGV-0046832_38	UniRef90	UniRef90_UPI000EF0315D	SAM-dependent methyltransferase	NA
UHGV-0046832_38	eggNOG-mapper	873513.HMPREF6485_1350	Methyltransferase domain	NA
UHGV-0046832_38	PADLOC	oMTase_00019	orphan methyltransferase	RM
UHGV-0046832_38	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0046832_38	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-0046832_38	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0046832_39	Structural annotation	NF037951	NA	NA
UHGV-0046832_40	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0046832_40	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0046832_40	UniRef90	UniRef90_A0A8A3XM45	LAGLIDADG-like domain-containing protein	NA
UHGV-0046832_40	eggNOG-mapper	1268240.ATFI01000007_gene432	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0046832_40	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0046832_40	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0046832_40	COG	COG0863	DNA modification methylase	NA
UHGV-0046832_41	Pfam	PF20338	NA	DUF6633
UHGV-0046832_42	PHROG	phrog_16304	NA	unknown function
UHGV-0046832_42	UniRef90	UniRef90_UPI00189BA9B9	NA	NA
UHGV-0046832_42	eggNOG-mapper	742726.HMPREF9448_02012	HNH endonuclease	NA
UHGV-0046832_42	Pfam	PF19808	NA	DUF6291
UHGV-0046832_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0046832_44	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0046832_44	UniRef90	UniRef90_UPI00189C5352	KilA-N domain-containing protein	NA
UHGV-0046832_44	eggNOG-mapper	1121100.JCM6294_529	KilA-N domain	NA
UHGV-0046832_44	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0046832_44	Structural annotation	PF04383, NF033622	NA	NA
UHGV-0046832_47	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0046832_47	eggNOG-mapper	1122971.BAME01000006_gene913	NA	NA
UHGV-0046832_47	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0046832_48	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0046832_48	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0046832_48	UniRef90	UniRef90_UPI0018984E82	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0046832_48	eggNOG-mapper	1033733.CAEK01000007_gene1648	Cytosine-specific methyltransferase	NA
UHGV-0046832_48	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0046832_48	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0046832_48	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0046832_48	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0046832_48	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0046832_49	PHROG	phrog_19572	NA	unknown function
UHGV-0046832_49	UniRef90	UniRef90_UPI00189ABE28	NA	NA
UHGV-0046832_49	eggNOG-mapper	1124780.ANNU01000020_gene3274	NA	NA
UHGV-0046832_49	Pfam	PF14902	NA	DUF4494
UHGV-0046832_49	Structural annotation	PF14902, COG2157	NA	NA
UHGV-0046832_50	Pfam	PF01816	Leucine rich repeat variant	LRV
UHGV-0046832_50	Pfam	PF02985	HEAT repeat	HEAT
UHGV-0046832_50	Structural annotation	PF01602, MF_03101, NF007244, COG1413	NA	NA
UHGV-0046832_51	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0046832_52	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0046832_53	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0046832_53	UniRef90	UniRef90_UPI0004B1C667	ERF family protein	NA
UHGV-0046832_53	eggNOG-mapper	1536774.H70357_24790	ERF superfamily	NA
UHGV-0046832_53	Pfam	PF04404	ERF superfamily	ERF
UHGV-0046832_53	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0046832_56	UniRef90	UniRef90_UPI001898BA5F	helix-turn-helix domain-containing protein	NA
UHGV-0046832_56	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0046832_56	Structural annotation	PF12728, MF_01155, NF040990, COG3311	NA	NA
UHGV-0046832_57	PHROG	phrog_16858	NA	unknown function
UHGV-0046832_57	Structural annotation	PF08587	NA	NA
UHGV-0046832_58	UniRef90	UniRef90_UPI00189BE232	helix-turn-helix domain-containing protein	NA
UHGV-0046832_58	eggNOG-mapper	1077285.AGDG01000026_gene1978	Transcriptional regulator	NA
UHGV-0046832_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046832_58	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0046832_58	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0046832_59	PHROG	phrog_4792	anti-repressor	transcription regulation
UHGV-0046832_59	UniRef90	UniRef90_UPI001898773F	ORF6N domain-containing protein	NA
UHGV-0046832_59	eggNOG-mapper	585502.HMPREF0645_0768	ORF6N domain	NA
UHGV-0046832_59	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0046832_59	COG	COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	NA
UHGV-0046832_59	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0046832_62	PHROG	phrog_9710	NA	unknown function
UHGV-0046832_62	UniRef90	UniRef90_A0A6I0HAA0	Bacteriophage CI repressor	NA
UHGV-0046832_62	eggNOG-mapper	435590.BVU_3208	NA	NA
UHGV-0046832_62	Structural annotation	PF07022	NA	NA
UHGV-0046832_63	PHROG	phrog_17519	NA	unknown function
UHGV-0046832_63	UniRef90	UniRef90_UPI00189A59D5	NA	NA
UHGV-0046832_63	eggNOG-mapper	657309.BXY_08580	NA	NA
UHGV-0046832_63	Pfam	PF12083	NA	DUF3560
UHGV-0046832_63	Structural annotation	PF12083	NA	NA