UHGV-0046966

Genome information

Genome length 26,768 bps

CDS count 40

Completeness 73.79% (medium-quality)

geNomad score 0.9659

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046966
vOTU ID	vOTU-031401
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_111
BioSample	SAMD00036388
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9659
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.74
Jumbo phage	No

Genome content
Genome length	26,768 bps
GC content	49.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	93.22%
Average CDS length	628.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046966_1	PHROG	phrog_5978	NA	unknown function
UHGV-0046966_1	UniRef90	UniRef90_A0A3D2HVN7	Fic family protein	NA
UHGV-0046966_1	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-0046966_1	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0046966_1	COG	COG3177	Fic family protein	NA
UHGV-0046966_1	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0046966_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0046966_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0046966_5	UniRef90	UniRef90_A7VTE0	LexA family transcriptional regulator	NA
UHGV-0046966_5	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-0046966_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046966_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0046966_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0046966_5	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0046966_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0046966_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0046966_6	UniRef90	UniRef90_A7VTD9	DNA-binding helix-turn-helix protein	NA
UHGV-0046966_6	eggNOG-mapper	428125.CLOLEP_01831	sequence-specific DNA binding	NA
UHGV-0046966_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046966_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0046966_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0046966_8	Structural annotation	PF15582, MF_00791, NF041178, COG2847	NA	NA
UHGV-0046966_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0046966_9	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0046966_12	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0046966_12	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046966_12	UniRef90	UniRef90_A0A7G9WF72	AAA family ATPase	NA
UHGV-0046966_12	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-0046966_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0046966_12	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0046966_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0046966_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0046966_13	UniRef90	UniRef90_R6QSG7	Recombinational DNA repair protein RecT (Prophage associated)	NA
UHGV-0046966_13	eggNOG-mapper	1111134.HMPREF1253_0395	RecT family	NA
UHGV-0046966_13	Pfam	PF03837	RecT family	RecT
UHGV-0046966_13	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0046966_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0046966_13	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0046966_14	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0046966_14	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0046966_14	UniRef90	UniRef90_UPI00190EB189	MBL fold metallo-hydrolase	NA
UHGV-0046966_14	eggNOG-mapper	1444309.JAQG01000013_gene1930	Metallo-beta-lactamase superfamily	NA
UHGV-0046966_14	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0046966_14	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0046966_14	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0046966_15	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0046966_15	UniRef90	UniRef90_UPI00067E73A4	NA	NA
UHGV-0046966_15	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-0046966_15	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0046966_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0046966_15	Structural annotation	PF14297	NA	NA
UHGV-0046966_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0046966_16	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0046966_16	UniRef90	UniRef90_A0A3D0M1J0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0046966_16	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0046966_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0046966_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0046966_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0046966_20	UniRef90	UniRef90_A0A3A9EZN6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0046966_20	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-0046966_20	Structural annotation	PF07374	NA	NA
UHGV-0046966_21	PHROG	phrog_13999	NA	unknown function
UHGV-0046966_22	PHROG	phrog_29177	NA	unknown function
UHGV-0046966_22	UniRef90	UniRef90_UPI001AE4C5CF	TIR domain-containing protein	NA
UHGV-0046966_22	Pfam	PF13676	TIR domain	TIR_2
UHGV-0046966_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0046966_24	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046966_24	UniRef90	UniRef90_UPI001897DF0D	HNH endonuclease	NA
UHGV-0046966_24	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0046966_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0046966_25	PHROG	phrog_9479	NA	unknown function
UHGV-0046966_25	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0046966_25	Structural annotation	PF15529	NA	NA
UHGV-0046966_26	PHROG	phrog_8680	NA	unknown function
UHGV-0046966_26	UniRef90	UniRef90_UPI00189ACAD3	NA	NA
UHGV-0046966_26	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0046966_26	Pfam	PF14386	NA	DUF4417
UHGV-0046966_26	Structural annotation	PF14386	NA	NA
UHGV-0046966_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0046966_27	UniRef90	UniRef90_UPI001898F58A	P27 family phage terminase small subunit	NA
UHGV-0046966_27	eggNOG-mapper	1121334.KB911073_gene1856	NA	NA
UHGV-0046966_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0046966_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0046966_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0046966_28	UniRef90	UniRef90_UPI0018982ECF	terminase large subunit	NA
UHGV-0046966_28	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0046966_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0046966_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0046966_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0046966_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0046966_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0046966_29	UniRef90	UniRef90_UPI00082C9597	phage portal protein	NA
UHGV-0046966_29	eggNOG-mapper	1304866.K413DRAFT_1223	Phage portal protein, HK97 family	NA
UHGV-0046966_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0046966_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0046966_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0046966_29	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0046966_30	KOfam	K06904	NA	NA
UHGV-0046966_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0046966_30	UniRef90	UniRef90_UPI0018981ADD	HK97 family phage prohead protease	NA
UHGV-0046966_30	eggNOG-mapper	1304866.K413DRAFT_1224	Phage prohead protease, HK97 family	NA
UHGV-0046966_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0046966_30	COG	COG3740	Phage head maturation protease	NA
UHGV-0046966_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0046966_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0046966_31	UniRef90	UniRef90_UPI0009511B79	phage major capsid protein	NA
UHGV-0046966_31	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0046966_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0046966_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0046966_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0046966_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0046966_32	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0046966_32	UniRef90	UniRef90_A0A4S2AEU0	Phage gp6-like head-tail connector protein	NA
UHGV-0046966_32	eggNOG-mapper	1294142.CINTURNW_0294	Phage gp6-like head-tail connector protein	NA
UHGV-0046966_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0046966_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0046966_33	PHROG	phrog_25	head closure Hc1	connector
UHGV-0046966_33	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0046966_33	eggNOG-mapper	568816.Acin_1972	Phage head-tail joining protein	NA
UHGV-0046966_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0046966_33	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0046966_33	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0046966_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0046966_34	eggNOG-mapper	1123075.AUDP01000020_gene1517	NA	NA
UHGV-0046966_34	Structural annotation	PF05657	NA	NA
UHGV-0046966_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0046966_35	UniRef90	UniRef90_R9KQ46	HK97 gp10 family phage protein	NA
UHGV-0046966_35	eggNOG-mapper	397290.C810_00425	NA	NA
UHGV-0046966_35	Structural annotation	TIGR01725	NA	NA
UHGV-0046966_36	PHROG	phrog_88	major tail protein	tail
UHGV-0046966_36	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-0046966_36	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0046966_36	COG	COG5492	NA	NA
UHGV-0046966_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0046966_37	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0046966_38	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0046966_38	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0046966_38	UniRef90	UniRef90_UPI00189C4E6E	phage tail tape measure protein	NA
UHGV-0046966_38	eggNOG-mapper	1408437.JNJN01000030_gene1055	Phage-related minor tail protein	NA
UHGV-0046966_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0046966_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0046966_38	COG	COG5283	Phage-related tail protein	NA
UHGV-0046966_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0046966_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0046966_39	UniRef90	UniRef90_UPI00040E71D3	phage tail family protein	NA
UHGV-0046966_39	eggNOG-mapper	1120933.ATUY01000002_gene165	NA	NA
UHGV-0046966_39	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0046966_39	Structural annotation	PF19266, PF11699, TIGR01633, COG4722	NA	NA
UHGV-0046966_40	PHROG	phrog_3558	tail protein	tail
UHGV-0046966_40	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0046966_40	COG	COG4926	Phage-related protein	NA