UHGV-0047070

Genome information

Genome length 29,435 bps

CDS count 52

Completeness 80.65% (medium-quality)

geNomad score 0.9606

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047070
vOTU ID	vOTU-021300
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3155
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9606
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.68
Jumbo phage	No

Genome content
Genome length	29,435 bps
GC content	30.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	85.99%
Average CDS length	489.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047070_2	PHROG	phrog_87	metallo-protease	other
UHGV-0047070_2	UniRef90	UniRef90_A0A0J8Z0Z0	Toxin-antitoxin system	NA
UHGV-0047070_2	eggNOG-mapper	1121267.JHZL01000042_gene1451	IrrE N-terminal-like domain	NA
UHGV-0047070_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0047070_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0047070_2	Structural annotation	PF06114, NF038139, COG2856	NA	NA
UHGV-0047070_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0047070_3	PHROG	phrog_3088	amidase	lysis
UHGV-0047070_3	UniRef90	UniRef90_A0A2T3FZ87	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0047070_3	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0047070_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0047070_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0047070_3	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0047070_3	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0047070_4	PHROG	phrog_918	NA	unknown function
UHGV-0047070_4	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0047070_4	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0047070_4	Pfam	PF19791	NA	DUF6275
UHGV-0047070_4	Structural annotation	PF19791	NA	NA
UHGV-0047070_5	PHROG	phrog_4105	NA	unknown function
UHGV-0047070_5	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0047070_6	PHROG	phrog_1129	holin	lysis
UHGV-0047070_6	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-0047070_6	eggNOG-mapper	411490.ANACAC_00598	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0047070_6	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0047070_6	Structural annotation	PF06946	NA	NA
UHGV-0047070_10	PHROG	phrog_9994	NA	unknown function
UHGV-0047070_10	eggNOG-mapper	1232446.BAIE02000011_gene1583	NA	NA
UHGV-0047070_10	Structural annotation	PF20747	NA	NA
UHGV-0047070_11	PHROG	phrog_538	minor tail protein	tail
UHGV-0047070_11	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0047070_11	eggNOG-mapper	1232446.BAIE02000011_gene1584	NA	NA
UHGV-0047070_11	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0047070_11	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0047070_12	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0047070_12	eggNOG-mapper	1232446.BAIE02000011_gene1585	NA	NA
UHGV-0047070_12	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0047070_13	PHROG	phrog_17020	NA	unknown function
UHGV-0047070_13	UniRef90	UniRef90_A0A0J8Z1A0	Tail protein	NA
UHGV-0047070_13	eggNOG-mapper	1122989.KB898607_gene43	nuclear chromosome segregation	NA
UHGV-0047070_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0047070_15	eggNOG-mapper	1414720.CBYM010000040_gene1653	NA	NA
UHGV-0047070_16	PHROG	phrog_885	major tail protein	tail
UHGV-0047070_16	eggNOG-mapper	1414720.CBYM010000040_gene1652	NA	NA
UHGV-0047070_17	PHROG	phrog_957	head protein	head and packaging
UHGV-0047070_17	UniRef90	UniRef90_UPI0004B43D30	NA	NA
UHGV-0047070_17	eggNOG-mapper	1414720.CBYM010000040_gene1651	NA	NA
UHGV-0047070_17	Pfam	PF11367	NA	DUF3168
UHGV-0047070_17	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0047070_18	UniRef90	UniRef90_A0A0J8Z1A5	Phage protein, HK97 gp10 family	NA
UHGV-0047070_18	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-0047070_18	Structural annotation	TIGR01725	NA	NA
UHGV-0047070_19	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0047070_19	UniRef90	UniRef90_A0A0J9BRH9	Phage head-tail adaptor	NA
UHGV-0047070_19	eggNOG-mapper	931626.Awo_c35070	NA	NA
UHGV-0047070_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0047070_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0047070_20	PHROG	phrog_5223	neck protein	connector
UHGV-0047070_20	UniRef90	UniRef90_UPI0004B59526	head-tail connector protein	NA
UHGV-0047070_20	eggNOG-mapper	1414720.CBYM010000040_gene1648	NA	NA
UHGV-0047070_21	eggNOG-mapper	931276.Cspa_c10170	Phage capsid family	NA
UHGV-0047070_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0047070_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0047070_22	UniRef90	UniRef90_UPI00148B248C	phage major capsid protein	NA
UHGV-0047070_22	eggNOG-mapper	1235793.C809_01920	Phage capsid family	NA
UHGV-0047070_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0047070_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0047070_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0047070_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0047070_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0047070_23	UniRef90	UniRef90_A0A0J8Z1U4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0047070_23	eggNOG-mapper	1423758.BN55_04260	Belongs to the peptidase S14 family	NA
UHGV-0047070_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0047070_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0047070_23	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0047070_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0047070_24	UniRef90	UniRef90_A0A0J8Z114	Prophage LambdaBa04, portal protein	NA
UHGV-0047070_24	eggNOG-mapper	1414720.CBYM010000040_gene1645	Portal protein	NA
UHGV-0047070_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0047070_24	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0047070_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0047070_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0047070_25	UniRef90	UniRef90_A0A0J8Z1B0	Phage terminase	NA
UHGV-0047070_25	eggNOG-mapper	1444310.JANV01000004_gene2684	Terminase	NA
UHGV-0047070_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0047070_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0047070_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0047070_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0047070_26	PHROG	phrog_1066	NA	unknown function
UHGV-0047070_26	eggNOG-mapper	318464.IO99_13770	NA	NA
UHGV-0047070_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0047070_27	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0047070_27	UniRef90	UniRef90_A0A0J8Z1U8	Prophage LambdaBa04, Gp54	NA
UHGV-0047070_27	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-0047070_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0047070_27	Pfam	PF13671	AAA domain	AAA_33
UHGV-0047070_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0047070_27	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0047070_28	Structural annotation	TIGR01636	NA	NA
UHGV-0047070_33	PHROG	phrog_12650	NA	unknown function
UHGV-0047070_33	Structural annotation	NF010673	NA	NA
UHGV-0047070_34	Structural annotation	PF13973, NF008465, COG5475	NA	NA
UHGV-0047070_35	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0047070_35	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-0047070_35	eggNOG-mapper	633135.C9WBA6_9CAUD	exonuclease activity	NA
UHGV-0047070_35	Pfam	PF08139	Prokaryotic membrane lipoprotein lipid attachment site	LPAM_1
UHGV-0047070_37	eggNOG-mapper	1336234.JAGN01000004_gene538	NA	NA
UHGV-0047070_38	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0047070_38	UniRef90	UniRef90_UPI0008D223F5	HNH endonuclease	NA
UHGV-0047070_38	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0047070_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0047070_40	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0047070_40	UniRef90	UniRef90_UPI001C25836D	dUTPase	NA
UHGV-0047070_40	eggNOG-mapper	221109.22777829	dUTPase	NA
UHGV-0047070_40	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0047070_40	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0047070_40	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0047070_41	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0047070_41	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0047070_42	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0047070_42	PHROG	phrog_216	integrase	integration and excision
UHGV-0047070_42	UniRef90	UniRef90_A0A415XFD4	Tyr recombinase domain-containing protein	NA
UHGV-0047070_42	eggNOG-mapper	1232446.BAIE02000011_gene1620	Integrase	NA
UHGV-0047070_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0047070_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0047070_42	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0047070_45	PHROG	phrog_15768	NA	unknown function
UHGV-0047070_45	UniRef90	UniRef90_A0A0J8Z1W1	NA	NA
UHGV-0047070_45	eggNOG-mapper	1158294.JOMI01000009_gene1122	NA	NA
UHGV-0047070_45	Pfam	PF19808	NA	DUF6291
UHGV-0047070_46	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0047070_46	eggNOG-mapper	118005.AWNK01000016_gene1016	NA	NA
UHGV-0047070_47	PHROG	phrog_1029	NA	unknown function
UHGV-0047070_47	eggNOG-mapper	445974.CLORAM_02952	NA	NA
UHGV-0047070_47	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0047070_49	Structural annotation	PF07408, MF_01560, NF010187, COG4838	NA	NA
UHGV-0047070_50	Structural annotation	PF20385	NA	NA
UHGV-0047070_52	UniRef90	UniRef90_A0A0J8Z143	HTH cro/C1-type domain-containing protein	NA
UHGV-0047070_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0047070_52	Structural annotation	PF01381, NF041951, COG1476	NA	NA