UHGV-0047117

Genome information

Genome length 13,388 bps

CDS count 15

Completeness 94.61% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047117
vOTU ID	vOTU-063303
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_3679
BioSample	SAMEA728649
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.1
Jumbo phage	No

Genome content
Genome length	13,388 bps
GC content	45.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	15
CDS density	91.60%
Average CDS length	826.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047117_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0047117_3	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0047117_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0047117_3	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0047117_4	Structural annotation	PF20934	NA	NA
UHGV-0047117_5	UniRef90	UniRef90_A0A843HBI5	Ig-like domain-containing protein	NA
UHGV-0047117_5	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0047117_7	PHROG	phrog_11037	NA	unknown function
UHGV-0047117_7	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-0047117_7	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-0047117_7	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0047117_7	COG	COG3942	Surface antigen	NA
UHGV-0047117_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0047117_9	PHROG	phrog_291	endolysin	lysis
UHGV-0047117_9	UniRef90	UniRef90_UPI0006936537	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0047117_9	eggNOG-mapper	1437608.BBIA_1423	Glycosyl hydrolases family 25	NA
UHGV-0047117_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0047117_9	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0047117_9	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0047117_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-0047117_11	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0047117_11	eggNOG-mapper	10747.Q38007_BPCP1	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0047117_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0047117_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0047117_12	Structural annotation	PF17427	NA	NA
UHGV-0047117_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0047117_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0047117_14	UniRef90	UniRef90_A0A843HG57	DNA-directed DNA polymerase	NA
UHGV-0047117_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0047117_14	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA