UHGV-0047212

Genome information

Genome length 29,318 bps

CDS count 40

Completeness 77.49% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047212
vOTU ID	vOTU-021570
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_23493
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.44
Jumbo phage	No

Genome content
Genome length	29,318 bps
GC content	37.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	92.68%
Average CDS length	684.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047212_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0047212_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0047212_1	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-0047212_1	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0047212_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0047212_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0047212_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0047212_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0047212_2	PHROG	phrog_1847	NA	unknown function
UHGV-0047212_2	UniRef90	UniRef90_A0A174S171	Membrane-bound metallopeptidase	NA
UHGV-0047212_2	eggNOG-mapper	483218.BACPEC_01182	T5orf172	NA
UHGV-0047212_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0047212_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0047212_2	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0047212_3	PHROG	phrog_3845	NA	unknown function
UHGV-0047212_3	UniRef90	UniRef90_UPI0019563C69	PH domain-containing protein	NA
UHGV-0047212_3	eggNOG-mapper	768710.DesyoDRAFT_5205	PFAM Tellurite resistance protein TerB	NA
UHGV-0047212_3	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0047212_3	Structural annotation	PF01096, TIGR04165	NA	NA
UHGV-0047212_4	PHROG	phrog_20886	NA	unknown function
UHGV-0047212_4	UniRef90	UniRef90_A0A660M5N1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0047212_4	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0047212_4	Structural annotation	PF06114	NA	NA
UHGV-0047212_5	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0047212_5	PHROG	phrog_8036	NA	unknown function
UHGV-0047212_5	UniRef90	UniRef90_A0A6N2UQZ1	DNA-damage-inducible protein D	NA
UHGV-0047212_5	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-0047212_5	AcrCatalog	cluster_17589	NA	NA
UHGV-0047212_5	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0047212_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0047212_5	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0047212_5	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0047212_5	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0047212_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0047212_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0047212_6	UniRef90	UniRef90_R6A4U7	DNA-binding protein	NA
UHGV-0047212_6	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0047212_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0047212_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0047212_6	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0047212_7	UniRef90	UniRef90_UPI000E7391FB	helix-turn-helix domain-containing protein	NA
UHGV-0047212_7	eggNOG-mapper	1321782.HMPREF1986_02244	Helix-turn-helix domain	NA
UHGV-0047212_7	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0047212_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0047212_10	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0047212_10	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0047212_10	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0047212_11	PHROG	phrog_20040	NA	unknown function
UHGV-0047212_11	eggNOG-mapper	1538644.KO02_12130	NA	NA
UHGV-0047212_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0047212_14	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0047212_14	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0047212_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0047212_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0047212_15	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-0047212_15	eggNOG-mapper	1121441.AUCX01000027_gene286	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0047212_15	Pfam	PF00075	RNase H	RNase_H
UHGV-0047212_15	COG	COG0328	Ribonuclease HI	NA
UHGV-0047212_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0047212_16	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0047212_17	PHROG	phrog_8470	NA	unknown function
UHGV-0047212_17	UniRef90	UniRef90_UPI001D08730A	PcfJ domain-containing protein	NA
UHGV-0047212_17	eggNOG-mapper	483218.BACPEC_01166	PcfJ-like protein	NA
UHGV-0047212_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0047212_17	Structural annotation	PF14284	NA	NA
UHGV-0047212_18	PHROG	phrog_15077	NA	unknown function
UHGV-0047212_18	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0047212_18	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0047212_18	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0047212_19	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0047212_19	UniRef90	UniRef90_A0A1C5VVJ6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0047212_19	eggNOG-mapper	1116375.VEJY3_09830	NA	NA
UHGV-0047212_19	Pfam	PF14359	NA	DUF4406
UHGV-0047212_19	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0047212_19	Structural annotation	PF14359, TIGR03646, COG3613	NA	NA
UHGV-0047212_20	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0047212_20	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0047212_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0047212_21	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0047212_21	Structural annotation	PF02996	NA	NA
UHGV-0047212_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0047212_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0047212_22	UniRef90	UniRef90_A0A356C6K0	Terminase small subunit	NA
UHGV-0047212_22	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-0047212_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0047212_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0047212_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0047212_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0047212_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0047212_23	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-0047212_23	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-0047212_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0047212_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0047212_23	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0047212_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0047212_24	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-0047212_24	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0047212_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0047212_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0047212_25	UniRef90	UniRef90_A0A3D5LQU4	Minor capsid protein	NA
UHGV-0047212_25	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0047212_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0047212_25	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0047212_25	Structural annotation	PF06152, PF03496, NF041404	NA	NA
UHGV-0047212_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0047212_28	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0047212_29	PHROG	phrog_422	major head protein	head and packaging
UHGV-0047212_29	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-0047212_29	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0047212_29	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0047212_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0047212_30	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0047212_31	PHROG	phrog_8710	NA	unknown function
UHGV-0047212_31	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0047212_31	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0047212_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0047212_32	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0047212_32	Structural annotation	PF11114	NA	NA
UHGV-0047212_33	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0047212_33	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0047212_33	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0047212_33	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0047212_33	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0047212_34	PHROG	phrog_820	major tail protein	tail
UHGV-0047212_34	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0047212_34	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0047212_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0047212_35	PHROG	phrog_8300	NA	unknown function
UHGV-0047212_35	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0047212_35	Structural annotation	PF06896	NA	NA
UHGV-0047212_36	PHROG	phrog_8355	NA	unknown function
UHGV-0047212_36	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0047212_36	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-0047212_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0047212_36	Structural annotation	PF06854	NA	NA
UHGV-0047212_37	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0047212_37	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0047212_37	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0047212_37	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0047212_37	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0047212_38	PHROG	phrog_1194	NA	unknown function
UHGV-0047212_38	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0047212_38	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0047212_39	PHROG	phrog_1401	NA	unknown function
UHGV-0047212_39	UniRef90	UniRef90_UPI001D00FC65	NA	NA
UHGV-0047212_39	eggNOG-mapper	1391647.AVSV01000003_gene1820	NA	NA
UHGV-0047212_39	Structural annotation	PF07761	NA	NA
UHGV-0047212_40	PHROG	phrog_6616	tail protein	tail
UHGV-0047212_40	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0047212_40	COG	COG4926	Phage-related protein	NA