UHGV-0047245

Genome information

Genome length 29,104 bps

CDS count 45

Completeness 87.65% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047245
vOTU ID	vOTU-024993
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3421
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.43
Jumbo phage	No

Genome content
Genome length	29,104 bps
GC content	57.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	95.85%
Average CDS length	623.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047245_2	Structural annotation	NF012201	NA	NA
UHGV-0047245_3	PHROG	phrog_521	tail protein	tail
UHGV-0047245_3	UniRef90	UniRef90_A0A415ZGE0	NA	NA
UHGV-0047245_3	eggNOG-mapper	1120998.AUFC01000013_gene2954	NA	NA
UHGV-0047245_3	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0047245_3	COG	COG3778	NA	NA
UHGV-0047245_3	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0047245_4	PHROG	phrog_6	baseplate protein	tail
UHGV-0047245_4	UniRef90	UniRef90_A0A415ZGA0	Baseplate J protein	NA
UHGV-0047245_4	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0047245_4	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0047245_4	COG	COG3299	NA	NA
UHGV-0047245_4	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0047245_5	UniRef90	UniRef90_A0A3E2XWS6	NA	NA
UHGV-0047245_5	eggNOG-mapper	318464.IO99_13685	NA	NA
UHGV-0047245_5	Pfam	PF10934	NA	DUF2634
UHGV-0047245_5	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0047245_5	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0047245_6	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0047245_7	PHROG	phrog_400	tail protein	tail
UHGV-0047245_7	UniRef90	UniRef90_A0A3E2XWU2	CHAP domain-containing protein	NA
UHGV-0047245_7	eggNOG-mapper	500633.CLOHIR_00378	NLP P60 protein	NA
UHGV-0047245_7	Pfam	PF05257	CHAP domain	CHAP
UHGV-0047245_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0047245_7	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0047245_8	PHROG	phrog_23201	NA	unknown function
UHGV-0047245_8	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0047245_8	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0047245_8	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0047245_8	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0047245_9	PHROG	phrog_7972	NA	unknown function
UHGV-0047245_9	UniRef90	UniRef90_A0A1M6DPG2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0047245_9	eggNOG-mapper	1203606.HMPREF1526_01348	phage tail tape measure protein	NA
UHGV-0047245_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0047245_9	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0047245_11	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0047245_11	eggNOG-mapper	1203606.HMPREF1526_01346	NA	NA
UHGV-0047245_11	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0047245_12	PHROG	phrog_365	tail protein	tail
UHGV-0047245_12	UniRef90	UniRef90_A0A417VUQ8	Terminase	NA
UHGV-0047245_12	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-0047245_12	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0047245_12	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0047245_13	PHROG	phrog_1480	tail sheath	tail
UHGV-0047245_13	UniRef90	UniRef90_A0A396Q9E2	Phage tail protein	NA
UHGV-0047245_13	eggNOG-mapper	97138.C820_00609	Phage tail sheath C-terminal domain	NA
UHGV-0047245_13	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0047245_13	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0047245_14	PHROG	phrog_525	NA	unknown function
UHGV-0047245_14	Pfam	PF20765	NA	DUF6838
UHGV-0047245_14	Structural annotation	PF20765	NA	NA
UHGV-0047245_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0047245_15	UniRef90	UniRef90_UPI00189BF3BE	HK97 gp10 family phage protein	NA
UHGV-0047245_15	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0047245_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0047245_15	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0047245_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-0047245_16	UniRef90	UniRef90_A0A396Q875	Head-tail adaptor protein	NA
UHGV-0047245_16	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0047245_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0047245_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0047245_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0047245_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0047245_17	UniRef90	UniRef90_A0A396Q9S6	Phage gp6-like head-tail connector protein	NA
UHGV-0047245_17	eggNOG-mapper	1209989.TepiRe1_2602	Phage gp6-like head-tail connector protein	NA
UHGV-0047245_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0047245_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0047245_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0047245_18	UniRef90	UniRef90_A0A417VTC4	Phage major capsid protein	NA
UHGV-0047245_18	eggNOG-mapper	1203606.HMPREF1526_01339	Phage capsid family	NA
UHGV-0047245_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0047245_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0047245_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0047245_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0047245_19	KOfam	K06904	NA	NA
UHGV-0047245_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0047245_19	UniRef90	UniRef90_A0A396QDF0	HK97 family phage prohead protease	NA
UHGV-0047245_19	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0047245_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0047245_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0047245_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0047245_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0047245_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0047245_20	UniRef90	UniRef90_A0A396QRU6	Phage portal protein	NA
UHGV-0047245_20	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0047245_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0047245_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0047245_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0047245_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0047245_21	UniRef90	UniRef90_A0A396Q7Z1	Terminase large subunit	NA
UHGV-0047245_21	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-0047245_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0047245_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0047245_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0047245_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0047245_23	PHROG	phrog_1066	NA	unknown function
UHGV-0047245_23	eggNOG-mapper	1203606.HMPREF1526_01333	NA	NA
UHGV-0047245_23	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0047245_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0047245_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0047245_24	UniRef90	UniRef90_A0A396QGN3	HNH endonuclease	NA
UHGV-0047245_24	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0047245_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0047245_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0047245_25	Structural annotation	PF15188	NA	NA
UHGV-0047245_26	UniRef90	UniRef90_A0A6L5GQ43	Conjugal transfer protein	NA
UHGV-0047245_26	eggNOG-mapper	411469.EUBHAL_01483	Cysteine-rich KTR	NA
UHGV-0047245_26	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0047245_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0047245_27	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0047245_27	Structural annotation	PF01446	NA	NA
UHGV-0047245_28	PHROG	phrog_22543	NA	unknown function
UHGV-0047245_28	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0047245_29	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0047245_29	PHROG	phrog_27290	NA	unknown function
UHGV-0047245_29	UniRef90	UniRef90_UPI001C01E910	ParB N-terminal domain-containing protein	NA
UHGV-0047245_29	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0047245_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0047245_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0047245_29	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0047245_30	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0047245_30	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0047245_30	UniRef90	UniRef90_A0A416DGY9	ParA family protein	NA
UHGV-0047245_30	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0047245_30	Pfam	PF13614	AAA domain	AAA_31
UHGV-0047245_30	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0047245_30	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0047245_31	UniRef90	UniRef90_A0A417TN68	HTH_58 domain-containing protein	NA
UHGV-0047245_31	Structural annotation	PF02796	NA	NA
UHGV-0047245_33	Structural annotation	PF07870	NA	NA
UHGV-0047245_34	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0047245_34	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0047245_34	UniRef90	UniRef90_A0A3E2XWR1	DNA helicase	NA
UHGV-0047245_34	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0047245_34	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0047245_34	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0047245_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-0047245_34	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0047245_35	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0047245_35	UniRef90	UniRef90_H6LCD1	Bacteriophage-like protein	NA
UHGV-0047245_35	eggNOG-mapper	931626.Awo_c35220	DnaD domain protein	NA
UHGV-0047245_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0047245_35	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-0047245_37	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0047245_37	UniRef90	UniRef90_A0A417F5P6	Transcriptional regulator	NA
UHGV-0047245_37	eggNOG-mapper	537013.CLOSTMETH_01707	Helix-turn-helix XRE-family like proteins	NA
UHGV-0047245_37	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0047245_37	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0047245_37	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0047245_38	UniRef90	UniRef90_UPI000D1F26C7	helix-turn-helix domain-containing protein	NA
UHGV-0047245_38	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0047245_39	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0047245_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0047245_39	UniRef90	UniRef90_A0A417BRQ8	XRE family transcriptional regulator	NA
UHGV-0047245_39	eggNOG-mapper	397291.C804_05455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0047245_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047245_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0047245_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0047245_42	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0047245_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0047245_42	UniRef90	UniRef90_A0A417TPA6	XRE family transcriptional regulator	NA
UHGV-0047245_42	eggNOG-mapper	755731.Clo1100_0530	transcriptional regulator	NA
UHGV-0047245_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047245_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0047245_42	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0047245_43	PHROG	phrog_87	metallo-protease	other
UHGV-0047245_43	UniRef90	UniRef90_A0A416DGX8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0047245_43	eggNOG-mapper	1226322.HMPREF1545_00086	NA	NA
UHGV-0047245_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0047245_43	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0047245_44	PHROG	phrog_38135	NA	unknown function
UHGV-0047245_44	UniRef90	UniRef90_A0A416DH09	NA	NA
UHGV-0047245_44	eggNOG-mapper	398511.BpOF4_17590	NA	NA
UHGV-0047245_44	Pfam	PF14020	NA	DUF4236
UHGV-0047245_44	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0047245_44	Structural annotation	PF14020, PF21602	NA	NA
UHGV-0047245_45	KOfam	K14059	int; integrase	NA
UHGV-0047245_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0047245_45	UniRef90	UniRef90_UPI001C009E9E	site-specific integrase	NA
UHGV-0047245_45	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0047245_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0047245_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0047245_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0047245_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA