UHGV-0047357

Genome information

Genome length 37,701 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047357
vOTU ID	vOTU-009088
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_28626
BioSample	SAMEA1972463
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.26
Jumbo phage	No

Genome content
Genome length	37,701 bps
GC content	40.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.09%
Average CDS length	655.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047357_1	UniRef90	UniRef90_R6NXZ9	Cna protein B-type domain	NA
UHGV-0047357_1	eggNOG-mapper	411459.RUMOBE_02245	NA	NA
UHGV-0047357_1	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-0047357_3	UniRef90	UniRef90_A0A1G4WU60	The BURPS668_1122 family of deaminases	NA
UHGV-0047357_3	eggNOG-mapper	1567014.A0A0A7RVY7_9VIRU	Phage Mu protein F like protein	NA
UHGV-0047357_3	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0047357_3	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0047357_5	KOfam	K14059	int; integrase	NA
UHGV-0047357_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0047357_5	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0047357_5	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0047357_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0047357_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0047357_5	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0047357_6	PHROG	phrog_1847	NA	unknown function
UHGV-0047357_6	UniRef90	UniRef90_A0A355NQ11	NA	NA
UHGV-0047357_6	eggNOG-mapper	1200557.JHWV01000022_gene2461	T5orf172	NA
UHGV-0047357_6	Pfam	PF13250	NA	DUF4041
UHGV-0047357_6	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0047357_6	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0047357_6	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0047357_7	UniRef90	UniRef90_A0A374E958	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0047357_7	eggNOG-mapper	1232443.BAIA02000106_gene3117	NA	NA
UHGV-0047357_7	Structural annotation	PF06114	NA	NA
UHGV-0047357_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0047357_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0047357_8	UniRef90	UniRef90_A0A412L7U4	XRE family transcriptional regulator	NA
UHGV-0047357_8	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-0047357_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0047357_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047357_8	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0047357_8	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0047357_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0047357_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0047357_9	UniRef90	UniRef90_A0A412L7W1	XRE family transcriptional regulator	NA
UHGV-0047357_9	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-0047357_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047357_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0047357_14	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0047357_15	UniRef90	UniRef90_UPI000C789166	helix-turn-helix domain-containing protein	NA
UHGV-0047357_16	Structural annotation	COG1862	NA	NA
UHGV-0047357_19	PHROG	phrog_408	NA	unknown function
UHGV-0047357_20	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0047357_20	UniRef90	UniRef90_A0A412L7W2	NA	NA
UHGV-0047357_20	eggNOG-mapper	1151292.QEW_2472	NA	NA
UHGV-0047357_20	Pfam	PF10926	NA	DUF2800
UHGV-0047357_20	COG	COG2887	RecB family exonuclease	NA
UHGV-0047357_20	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0047357_21	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0047357_21	UniRef90	UniRef90_A0A412UNI7	NA	NA
UHGV-0047357_21	eggNOG-mapper	1123288.SOV_6c00600	NA	NA
UHGV-0047357_21	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0047357_21	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0047357_22	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0047357_22	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0047357_22	UniRef90	UniRef90_A0A412UNJ8	POLAc domain-containing protein	NA
UHGV-0047357_22	eggNOG-mapper	1274524.BSONL12_06038	DNA polymerase A domain	NA
UHGV-0047357_22	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0047357_22	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0047357_22	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0047357_23	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0047357_23	UniRef90	UniRef90_UPI001D06E26F	virulence-associated E family protein	NA
UHGV-0047357_23	eggNOG-mapper	536232.CLM_2670	virulence-associated E family protein	NA
UHGV-0047357_23	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0047357_23	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0047357_23	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0047357_24	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0047357_24	UniRef90	UniRef90_A0A412UNG8	VRR-NUC domain-containing protein	NA
UHGV-0047357_24	eggNOG-mapper	879305.HMPREF9290_0155	VRR_NUC	NA
UHGV-0047357_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0047357_24	Structural annotation	PF08774, MF_00130, NF002584	NA	NA
UHGV-0047357_25	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0047357_25	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0047357_25	UniRef90	UniRef90_A0A412L7W0	ATP-dependent helicase	NA
UHGV-0047357_25	eggNOG-mapper	97138.C820_00220	snf2 family	NA
UHGV-0047357_25	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0047357_25	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0047357_25	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0047357_25	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0047357_25	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0047357_27	PHROG	phrog_98	NA	unknown function
UHGV-0047357_27	UniRef90	UniRef90_UPI00189E57B4	YopX family protein	NA
UHGV-0047357_27	eggNOG-mapper	563031.HMPREF0666_01127	YopX protein	NA
UHGV-0047357_27	Pfam	PF09643	YopX protein	YopX
UHGV-0047357_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0047357_28	PHROG	phrog_10714	NA	unknown function
UHGV-0047357_28	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0047357_30	eggNOG-mapper	1540257.JQMW01000004_gene433	NA	NA
UHGV-0047357_30	Structural annotation	TIGR01636	NA	NA
UHGV-0047357_31	PHROG	phrog_3634	NA	unknown function
UHGV-0047357_31	eggNOG-mapper	411459.RUMOBE_00941	COG NOG22561 non supervised orthologous group	NA
UHGV-0047357_31	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0047357_31	Structural annotation	PF10137, MF_03036, TIGR03646, COG4271	NA	NA
UHGV-0047357_32	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0047357_32	UniRef90	UniRef90_UPI001B3C9B19	helix-turn-helix domain-containing protein	NA
UHGV-0047357_32	eggNOG-mapper	649747.HMPREF0083_05320	transposase activity	NA
UHGV-0047357_32	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0047357_32	Structural annotation	PF07141	NA	NA
UHGV-0047357_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0047357_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0047357_33	UniRef90	UniRef90_UPI00189AB5B3	terminase family protein	NA
UHGV-0047357_33	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-0047357_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0047357_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0047357_33	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0047357_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0047357_34	UniRef90	UniRef90_UPI00189C53D6	phage capsid protein	NA
UHGV-0047357_34	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0047357_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0047357_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0047357_35	UniRef90	UniRef90_UPI001897AC3D	phage minor capsid protein	NA
UHGV-0047357_35	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0047357_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0047357_35	COG	COG2369	NA	NA
UHGV-0047357_35	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0047357_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0047357_37	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-0047357_37	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0047357_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0047357_37	Structural annotation	PF06810	NA	NA
UHGV-0047357_38	PHROG	phrog_422	major head protein	head and packaging
UHGV-0047357_38	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0047357_38	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0047357_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0047357_39	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0047357_40	PHROG	phrog_3366	NA	unknown function
UHGV-0047357_40	Pfam	PF20536	NA	DUF6751
UHGV-0047357_40	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0047357_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0047357_41	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0047357_41	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0047357_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0047357_41	Structural annotation	PF11114	NA	NA
UHGV-0047357_42	PHROG	phrog_3266	tail completion	connector
UHGV-0047357_42	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0047357_42	Structural annotation	PF20765	NA	NA
UHGV-0047357_43	PHROG	phrog_3099	NA	unknown function
UHGV-0047357_43	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0047357_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0047357_44	PHROG	phrog_11299	NA	unknown function
UHGV-0047357_44	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0047357_44	Structural annotation	PF10666	NA	NA
UHGV-0047357_45	PHROG	phrog_706	NA	unknown function
UHGV-0047357_45	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0047357_45	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0047357_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0047357_45	Structural annotation	PF06854	NA	NA
UHGV-0047357_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0047357_47	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0047357_47	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0047357_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0047357_47	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0047357_48	PHROG	phrog_1194	NA	unknown function
UHGV-0047357_48	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0047357_48	Pfam	PF20458	NA	DUF6711
UHGV-0047357_48	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0047357_49	PHROG	phrog_18190	NA	unknown function
UHGV-0047357_49	eggNOG-mapper	483218.BACPEC_01143	NA	NA
UHGV-0047357_49	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0047357_50	Structural annotation	PF01664	NA	NA
UHGV-0047357_52	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA