UHGV-0047418

Genome information

Genome length 43,427 bps

CDS count 58

Completeness 78.78% (medium-quality)

geNomad score 0.9706

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047418
vOTU ID	vOTU-014986
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2296
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9706
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.12
Jumbo phage	No

Genome content
Genome length	43,427 bps
GC content	48.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	87.18%
Average CDS length	653.43 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047418_2	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0047418_2	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0047418_2	UniRef90	UniRef90_K1TCY0	DNA modification protein (Fragment)	NA
UHGV-0047418_2	eggNOG-mapper	679935.Alfi_0758	NA	NA
UHGV-0047418_2	Structural annotation	PF16092, MF_02210, NF007025, COG3818	NA	NA
UHGV-0047418_3	PHROG	phrog_17790	NA	unknown function
UHGV-0047418_3	UniRef90	UniRef90_A0A174QG70	Mor transcription activator domain-containing protein	NA
UHGV-0047418_3	eggNOG-mapper	1121098.HMPREF1534_03351	NA	NA
UHGV-0047418_4	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0047418_4	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0047418_4	UniRef90	UniRef90_R9I2Q6	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0047418_4	eggNOG-mapper	762984.HMPREF9445_02503	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0047418_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0047418_4	NCBIFam	NF009949.0	master DNA invertase Mpi family serine-type recombinase	NA
UHGV-0047418_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0047418_4	Structural annotation	PF00239, PF13384, NF009949, COG1961	NA	NA
UHGV-0047418_5	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0047418_5	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0047418_5	UniRef90	UniRef90_R9HUN3	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0047418_5	eggNOG-mapper	1236514.BAKL01000134_gene5617	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0047418_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0047418_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0047418_5	Structural annotation	PF00239, MF_00489, NF009949, COG1961	NA	NA
UHGV-0047418_6	UniRef90	UniRef90_UPI0018AA0FA3	pyocin knob domain-containing protein	NA
UHGV-0047418_8	UniRef90	UniRef90_UPI000E524A99	pyocin knob domain-containing protein	NA
UHGV-0047418_10	UniRef90	UniRef90_UPI00189FAB7D	pyocin knob domain-containing protein	NA
UHGV-0047418_15	PHROG	phrog_17422	NA	unknown function
UHGV-0047418_15	UniRef90	UniRef90_A0A174Q874	Carbohydrate binding domain	NA
UHGV-0047418_15	eggNOG-mapper	762984.HMPREF9445_02509	Phage minor structural protein	NA
UHGV-0047418_15	COG	COG4926	Phage-related protein	NA
UHGV-0047418_15	Structural annotation	PF14594, PF03921, PF20073, TIGR01665, NF041425, COG4926	NA	NA
UHGV-0047418_16	PHROG	phrog_6305	tail protein	tail
UHGV-0047418_16	UniRef90	UniRef90_F3PKF3	Conserved domain protein	NA
UHGV-0047418_16	eggNOG-mapper	585543.HMPREF0969_00686	NA	NA
UHGV-0047418_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0047418_17	PHROG	phrog_14295	NA	unknown function
UHGV-0047418_17	UniRef90	UniRef90_A0A3A6BRW0	Phage tail tape measure protein	NA
UHGV-0047418_17	eggNOG-mapper	762984.HMPREF9445_02511	NA	NA
UHGV-0047418_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0047418_18	UniRef90	UniRef90_F3PKF5	Conserved domain protein	NA
UHGV-0047418_18	eggNOG-mapper	585543.HMPREF0969_03637	NA	NA
UHGV-0047418_19	PHROG	phrog_14983	NA	unknown function
UHGV-0047418_19	UniRef90	UniRef90_F3PKF6	Conserved domain protein	NA
UHGV-0047418_19	eggNOG-mapper	585543.HMPREF0969_03636	NA	NA
UHGV-0047418_19	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0047418_20	PHROG	phrog_6767	NA	unknown function
UHGV-0047418_20	UniRef90	UniRef90_F3PKF7	Conserved domain protein	NA
UHGV-0047418_20	eggNOG-mapper	1236514.BAKL01000085_gene4871	NA	NA
UHGV-0047418_20	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0047418_21	PHROG	phrog_18116	NA	unknown function
UHGV-0047418_21	UniRef90	UniRef90_F3PKF9	Conserved domain protein	NA
UHGV-0047418_21	eggNOG-mapper	585543.HMPREF0969_03633	NA	NA
UHGV-0047418_22	PHROG	phrog_873	endolysin	head and packaging
UHGV-0047418_22	UniRef90	UniRef90_A0A3E4I055	Prophage MuMc02, structural protein P5	NA
UHGV-0047418_22	eggNOG-mapper	585543.HMPREF0969_03632	NA	NA
UHGV-0047418_23	eggNOG-mapper	585543.HMPREF0969_00692	NA	NA
UHGV-0047418_24	UniRef90	UniRef90_F3PKG2	Conserved domain protein	NA
UHGV-0047418_24	eggNOG-mapper	762984.HMPREF9445_02519	NA	NA
UHGV-0047418_24	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0047418_25	PHROG	phrog_11321	NA	unknown function
UHGV-0047418_25	UniRef90	UniRef90_F3PKG3	Phage prohead protease, HK97 family	NA
UHGV-0047418_25	eggNOG-mapper	585543.HMPREF0969_00694	Phage prohead protease, HK97 family	NA
UHGV-0047418_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0047418_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0047418_26	PHROG	phrog_4151	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0047418_26	UniRef90	UniRef90_A0A413V166	DDE transposase family protein	NA
UHGV-0047418_26	eggNOG-mapper	585543.HMPREF0969_00695	NA	NA
UHGV-0047418_26	COG	COG5484	NA	NA
UHGV-0047418_26	Structural annotation	PF06056	NA	NA
UHGV-0047418_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0047418_27	UniRef90	UniRef90_F3PKG5	Conserved domain protein	NA
UHGV-0047418_27	eggNOG-mapper	585543.HMPREF0969_00696	NA	NA
UHGV-0047418_27	COG	COG5362	Phage terminase large subunit	NA
UHGV-0047418_27	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5323	NA	NA
UHGV-0047418_28	PHROG	phrog_195	head-tail adaptor	connector
UHGV-0047418_28	UniRef90	UniRef90_UPI001F32C8F0	NA	NA
UHGV-0047418_28	eggNOG-mapper	762984.HMPREF9445_02523	NA	NA
UHGV-0047418_28	Pfam	PF07030	Bacteriophage Mu, Gp36	Phage_Mu_Gp36
UHGV-0047418_28	COG	COG4387	NA	NA
UHGV-0047418_28	Structural annotation	PF07030, COG4387	NA	NA
UHGV-0047418_29	PHROG	phrog_35074	NA	unknown function
UHGV-0047418_29	UniRef90	UniRef90_A0A7U8LQ46	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0047418_29	eggNOG-mapper	585543.HMPREF0969_00698	NA	NA
UHGV-0047418_29	Pfam	PF06074	NA	DUF935
UHGV-0047418_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0047418_29	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0047418_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0047418_29	COG	COG2369	NA	NA
UHGV-0047418_29	Structural annotation	PF06074, TIGR01537, TIGR01641, COG4383	NA	NA
UHGV-0047418_30	PHROG	phrog_26	tail completion or Neck1 protein	connector
UHGV-0047418_30	UniRef90	UniRef90_A0A7U8QMW1	Putative phage virion morphogenesis protein	NA
UHGV-0047418_30	eggNOG-mapper	585543.HMPREF0969_00699	Phage virion morphogenesis family	NA
UHGV-0047418_30	Pfam	PF05069	Phage virion morphogenesis family	Phage_tail_S
UHGV-0047418_30	COG	COG5005	NA	NA
UHGV-0047418_30	Structural annotation	PF05069, TIGR01635, COG5005	NA	NA
UHGV-0047418_31	PHROG	phrog_6911	NA	unknown function
UHGV-0047418_31	eggNOG-mapper	585543.HMPREF0969_00700	NA	NA
UHGV-0047418_31	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0047418_32	eggNOG-mapper	585543.HMPREF0969_00701	NA	NA
UHGV-0047418_35	PHROG	phrog_12607	nucleoside deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0047418_35	eggNOG-mapper	1121100.JCM6294_540	NA	NA
UHGV-0047418_35	Structural annotation	PF15891, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0047418_37	UniRef90	UniRef90_F3PKH6	Conserved domain protein	NA
UHGV-0047418_37	eggNOG-mapper	585543.HMPREF0969_03617	NA	NA
UHGV-0047418_37	Structural annotation	PF00679, MF_00707, NF010078, COG4492	NA	NA
UHGV-0047418_38	eggNOG-mapper	1236514.BAKL01000008_gene918	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate	NA
UHGV-0047418_38	COG	COG0178	Excinuclease UvrABC ATPase subunit	NA
UHGV-0047418_38	Structural annotation	PF00684	NA	NA
UHGV-0047418_39	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0047418_39	UniRef90	UniRef90_A0A174P4N5	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0047418_39	eggNOG-mapper	762984.HMPREF9445_02537	Bacteriophage Mu Gam like protein	NA
UHGV-0047418_39	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0047418_39	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0047418_39	Structural annotation	PF07352, COG4396	NA	NA
UHGV-0047418_40	eggNOG-mapper	585543.HMPREF0969_00711	NA	NA
UHGV-0047418_40	Structural annotation	PF15188	NA	NA
UHGV-0047418_41	UniRef90	UniRef90_A0A174P042	DNA-binding protein	NA
UHGV-0047418_41	eggNOG-mapper	585543.HMPREF0969_00712	NA	NA
UHGV-0047418_41	Structural annotation	PF13591, TIGR01764, COG3311	NA	NA
UHGV-0047418_42	UniRef90	UniRef90_F3PKI3	Conserved domain protein	NA
UHGV-0047418_42	eggNOG-mapper	585543.HMPREF0969_00713	NA	NA
UHGV-0047418_43	PHROG	phrog_6891	ATPase	other
UHGV-0047418_43	UniRef90	UniRef90_UPI001958C160	ATP-binding protein	NA
UHGV-0047418_43	eggNOG-mapper	585543.HMPREF0969_00714	ATP-dependent serine protease	NA
UHGV-0047418_43	COG	COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	NA
UHGV-0047418_43	Structural annotation	PF03796, MF_01498, TIGR00416, COG1066	NA	NA
UHGV-0047418_44	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0047418_44	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0047418_44	UniRef90	UniRef90_A0A5M6A223	AAA family ATPase	NA
UHGV-0047418_44	eggNOG-mapper	585543.HMPREF0969_00715	AAA domain	NA
UHGV-0047418_44	Pfam	PF13401	AAA domain	AAA_22
UHGV-0047418_44	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0047418_44	Structural annotation	PF13401, MF_01509, TIGR03015, TIGR03070, COG2842	NA	NA
UHGV-0047418_45	PHROG	phrog_310	transposase	integration and excision
UHGV-0047418_45	UniRef90	UniRef90_A0A174P783	Integrase catalytic domain-containing protein	NA
UHGV-0047418_45	eggNOG-mapper	585543.HMPREF0969_00716	Transposase and inactivated derivatives	NA
UHGV-0047418_45	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0047418_45	Structural annotation	PF02914, PF09039, PF09299, NF033594, COG2801	NA	NA
UHGV-0047418_47	eggNOG-mapper	585543.HMPREF0969_00718	NA	NA
UHGV-0047418_48	eggNOG-mapper	585543.HMPREF0969_00719	NA	NA
UHGV-0047418_49	UniRef90	UniRef90_F3PKI8	Toxin-antitoxin system, antitoxin component, Xre domain protein	NA
UHGV-0047418_49	eggNOG-mapper	585543.HMPREF0969_00720	NA	NA
UHGV-0047418_49	Structural annotation	PF08587	NA	NA
UHGV-0047418_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0047418_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0047418_50	UniRef90	UniRef90_A0A3E4HWF4	Helix-turn-helix transcriptional regulator	NA
UHGV-0047418_50	eggNOG-mapper	585543.HMPREF0969_00722	Peptidase S24-like	NA
UHGV-0047418_50	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0047418_50	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0047418_50	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0047418_53	PHROG	phrog_10608	NA	unknown function
UHGV-0047418_53	eggNOG-mapper	585543.HMPREF0969_00724	NA	NA
UHGV-0047418_54	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0047418_54	PHROG	phrog_822	amidase	lysis
UHGV-0047418_54	UniRef90	UniRef90_A0A1Q6I225	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0047418_54	eggNOG-mapper	411479.BACUNI_04223	COG COG3023 Negative regulator of beta-lactamase expression	NA
UHGV-0047418_54	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0047418_54	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0047418_54	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0047418_55	UniRef90	UniRef90_A0A174UXF2	Smalltalk protein	NA
UHGV-0047418_55	eggNOG-mapper	1236514.BAKL01000080_gene4738	NA	NA
UHGV-0047418_55	Pfam	PF20096	NA	DUF6486
UHGV-0047418_55	NCBIFam	NF033879.1	smalltalk protein	NA
UHGV-0047418_56	UniRef90	UniRef90_E5VCJ4	DNA-binding protein	NA
UHGV-0047418_56	eggNOG-mapper	585543.HMPREF0969_03053	DNA-binding protein	NA
UHGV-0047418_56	Pfam	PF18291	HU domain fused to wHTH, Ig, or Glycine-rich motif	HU-HIG
UHGV-0047418_56	NCBIFam	TIGR01201.1	HU family DNA-binding protein	NA
UHGV-0047418_56	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0047418_56	Structural annotation	PF18291, MF_00380, TIGR01201, COG0776	NA	NA
UHGV-0047418_57	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0047418_57	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0047418_57	UniRef90	UniRef90_A0A174BTJ5	Replicative DNA helicase	NA
UHGV-0047418_57	eggNOG-mapper	411479.BACUNI_04227	Participates in initiation and elongation during chromosome replication	NA
UHGV-0047418_57	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0047418_57	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0047418_57	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0047418_57	COG	COG0305	Replicative DNA helicase	NA
UHGV-0047418_57	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0047418_58	UniRef90	UniRef90_A0A081UHK5	C2H2-type domain-containing protein	NA
UHGV-0047418_58	eggNOG-mapper	411479.BACUNI_04228	NA	NA