UHGV-0047419

Genome information

Genome length 28,379 bps

CDS count 46

Completeness 89.74% (medium-quality)

geNomad score 0.9654

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047419
vOTU ID	vOTU-024594
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2292
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9654
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.51
Jumbo phage	No

Genome content
Genome length	28,379 bps
GC content	40.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	89.51%
Average CDS length	554.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047419_1	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0047419_1	UniRef90	UniRef90_N9V9T3	Helicase ATP-binding domain-containing protein	NA
UHGV-0047419_1	eggNOG-mapper	908340.HMPREF9406_2595	SNF2 family N-terminal domain	NA
UHGV-0047419_1	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0047419_1	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0047419_1	Structural annotation	PF16203, MF_00661, NF002340, COG1061	NA	NA
UHGV-0047419_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0047419_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0047419_4	UniRef90	UniRef90_A0A099I4V0	Single-stranded DNA-binding protein	NA
UHGV-0047419_4	eggNOG-mapper	658659.HMPREF0983_02345	Single-stranded DNA-binding protein	NA
UHGV-0047419_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0047419_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0047419_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0047419_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0047419_4	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0047419_5	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0047419_5	UniRef90	UniRef90_A0A0R2J0F1	HNH endonuclease	NA
UHGV-0047419_5	eggNOG-mapper	945021.TEH_18310	NUMOD4 motif	NA
UHGV-0047419_5	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0047419_5	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0047419_5	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0047419_5	Structural annotation	PF13392, PF20987	NA	NA
UHGV-0047419_6	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0047419_9	UniRef90	UniRef90_UPI000E419D63	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0047419_9	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0047419_11	PHROG	phrog_3202	NA	unknown function
UHGV-0047419_11	UniRef90	UniRef90_A0A3A6DAB3	YjzC family protein	NA
UHGV-0047419_11	eggNOG-mapper	1123314.AUIO01000002_gene1996	YjzC-like protein	NA
UHGV-0047419_11	Pfam	PF14168	YjzC-like protein	YjzC
UHGV-0047419_11	Structural annotation	PF14168	NA	NA
UHGV-0047419_13	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0047419_13	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0047419_13	UniRef90	UniRef90_UPI001E415A90	terminase small subunit	NA
UHGV-0047419_13	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0047419_13	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0047419_13	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0047419_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0047419_13	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0047419_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0047419_14	PHROG	phrog_10250	NA	unknown function
UHGV-0047419_14	UniRef90	UniRef90_UPI001F05443B	PBSX family phage terminase large subunit	NA
UHGV-0047419_14	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0047419_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0047419_14	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0047419_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0047419_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0047419_14	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0047419_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0047419_15	UniRef90	UniRef90_UPI001F065727	phage portal protein	NA
UHGV-0047419_15	eggNOG-mapper	203119.Cthe_2475	phage portal protein, SPP1	NA
UHGV-0047419_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0047419_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0047419_16	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0047419_16	UniRef90	UniRef90_UPI001D109F96	minor capsid protein	NA
UHGV-0047419_16	eggNOG-mapper	411468.CLOSCI_00291	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0047419_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0047419_16	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0047419_16	COG	COG2369	NA	NA
UHGV-0047419_16	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0047419_18	PHROG	phrog_1315	NA	unknown function
UHGV-0047419_18	UniRef90	UniRef90_UPI001EDD2805	CpXC domain-containing protein	NA
UHGV-0047419_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0047419_20	UniRef90	UniRef90_UPI001F068CC9	phage scaffolding protein	NA
UHGV-0047419_20	eggNOG-mapper	1209989.TepiRe1_1150	Phage minor structural protein GP20	NA
UHGV-0047419_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0047419_20	Structural annotation	PF14265	NA	NA
UHGV-0047419_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-0047419_21	UniRef90	UniRef90_UPI001F060029	N4-gp56 family major capsid protein	NA
UHGV-0047419_21	eggNOG-mapper	411490.ANACAC_00777	NA	NA
UHGV-0047419_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0047419_21	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0047419_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0047419_22	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0047419_22	UniRef90	UniRef90_UPI001F05A2A0	phage head-tail connector protein	NA
UHGV-0047419_22	eggNOG-mapper	1123405.AUMM01000039_gene148	Phage gp6-like head-tail connector protein	NA
UHGV-0047419_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0047419_22	Structural annotation	PF05135	NA	NA
UHGV-0047419_23	UniRef90	UniRef90_A0A447EB47	Inhibitor of Type II CRISPR-Cas system	NA
UHGV-0047419_23	eggNOG-mapper	411468.CLOSCI_00284	NA	NA
UHGV-0047419_23	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0047419_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0047419_24	UniRef90	UniRef90_UPI00115A6A92	HK97 gp10 family phage protein	NA
UHGV-0047419_24	eggNOG-mapper	411468.CLOSCI_00283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0047419_24	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0047419_25	Structural annotation	PF12691	NA	NA
UHGV-0047419_26	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0047419_26	eggNOG-mapper	411468.CLOSCI_00281	NA	NA
UHGV-0047419_26	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0047419_27	Structural annotation	PF16462	NA	NA
UHGV-0047419_28	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0047419_28	UniRef90	UniRef90_UPI00115BFA1B	phage tail tape measure protein	NA
UHGV-0047419_28	eggNOG-mapper	411468.CLOSCI_00278	phage tail tape measure protein	NA
UHGV-0047419_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0047419_28	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0047419_28	COG	COG5283	Phage-related tail protein	NA
UHGV-0047419_28	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0047419_29	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0047419_29	eggNOG-mapper	1347392.CCEZ01000045_gene7	phage tail	NA
UHGV-0047419_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0047419_29	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0047419_30	PHROG	phrog_18110	NA	unknown function
UHGV-0047419_30	UniRef90	UniRef90_H1BAL5	Phage minor structural protein	NA
UHGV-0047419_30	eggNOG-mapper	908340.HMPREF9406_0815	NA	NA
UHGV-0047419_30	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0047419_30	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0047419_30	COG	COG4926	Phage-related protein	NA
UHGV-0047419_30	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0047419_31	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0047419_31	eggNOG-mapper	908340.HMPREF9406_2566	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0047419_31	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0047419_32	PHROG	phrog_24451	NA	unknown function
UHGV-0047419_32	UniRef90	UniRef90_A0A3P6KYQ0	NA	NA
UHGV-0047419_32	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-0047419_33	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0047419_33	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0047419_35	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0047419_35	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0047419_35	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0047419_37	PHROG	phrog_443	holin	lysis
UHGV-0047419_37	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0047419_37	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0047419_37	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0047419_37	Structural annotation	PF16945	NA	NA
UHGV-0047419_38	PHROG	phrog_4105	NA	unknown function
UHGV-0047419_38	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0047419_39	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0047419_39	PHROG	phrog_670	endolysin	lysis
UHGV-0047419_39	UniRef90	UniRef90_N9VAY7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0047419_39	eggNOG-mapper	999413.HMPREF1094_00201	Ami_2	NA
UHGV-0047419_39	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0047419_39	COG	COG3942	Surface antigen	NA
UHGV-0047419_39	Structural annotation	PF01510, PF16775, MF_04111, COG5632	NA	NA
UHGV-0047419_40	PHROG	phrog_1281	NA	unknown function
UHGV-0047419_40	UniRef90	UniRef90_A0A892AQ00	SocA family protein	NA
UHGV-0047419_40	eggNOG-mapper	608534.GCWU000341_00151	NA	NA
UHGV-0047419_40	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0047419_40	COG	COG3600	NA	NA
UHGV-0047419_40	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0047419_41	eggNOG-mapper	1321782.HMPREF1986_01829	NA	NA
UHGV-0047419_43	eggNOG-mapper	1232449.BAHV02000020_gene1353	NA	NA
UHGV-0047419_46	UniRef90	UniRef90_UPI0018A96F5E	helix-turn-helix transcriptional regulator	NA