UHGV-0047437

Genome information

Genome length 24,507 bps

CDS count 31

Completeness 62.12% (medium-quality)

geNomad score 0.9683

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047437
vOTU ID	vOTU-028323
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_5515
BioSample	SAMEA728916
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9683
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.78
Jumbo phage	No

Genome content
Genome length	24,507 bps
GC content	34.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	84.71%
Average CDS length	671.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047437_2	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0047437_2	UniRef90	UniRef90_UPI001593C099	minor capsid protein	NA
UHGV-0047437_2	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0047437_2	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0047437_2	COG	COG2369	NA	NA
UHGV-0047437_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0047437_3	UniRef90	UniRef90_UPI00156E473F	phage portal protein	NA
UHGV-0047437_3	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0047437_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0047437_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0047437_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0047437_4	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0047437_4	UniRef90	UniRef90_A0A1C5QTK5	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0047437_4	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0047437_4	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0047437_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0047437_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0047437_4	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0047437_5	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0047437_5	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0047437_5	UniRef90	UniRef90_A0A6B4XMY8	Phage portal protein	NA
UHGV-0047437_5	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0047437_5	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0047437_5	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0047437_5	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0047437_5	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0047437_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0047437_6	UniRef90	UniRef90_A0A1C6LD55	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0047437_6	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0047437_7	UniRef90	UniRef90_A0A6N9JTV9	NA	NA
UHGV-0047437_7	eggNOG-mapper	1235800.C819_02059	NA	NA
UHGV-0047437_7	Pfam	PF14213	NA	DUF4325
UHGV-0047437_7	COG	COG4585	Signal transduction histidine kinase ComP	NA
UHGV-0047437_7	Structural annotation	PF02518, PF01978, PF01740, MF_00637, TIGR01925, TIGR00738, COG2172, COG3432	NA	NA
UHGV-0047437_8	UniRef90	UniRef90_UPI000E44A7EA	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0047437_8	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0047437_9	UniRef90	UniRef90_UPI00192B5A66	NA	NA
UHGV-0047437_9	eggNOG-mapper	1196322.A370_02708	NA	NA
UHGV-0047437_9	Pfam	PF14199	NA	DUF4317
UHGV-0047437_9	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0047437_10	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0047437_10	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0047437_11	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0047437_11	UniRef90	UniRef90_UPI0009453343	NA	NA
UHGV-0047437_11	eggNOG-mapper	155864.EDL933_1712	NA	NA
UHGV-0047437_11	Pfam	PF14359	NA	DUF4406
UHGV-0047437_11	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0047437_11	Structural annotation	PF14359, TIGR03646, COG3613	NA	NA
UHGV-0047437_12	PHROG	phrog_15077	NA	unknown function
UHGV-0047437_12	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-0047437_12	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0047437_12	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0047437_13	PHROG	phrog_8470	NA	unknown function
UHGV-0047437_13	UniRef90	UniRef90_UPI00164C094F	PcfJ domain-containing protein	NA
UHGV-0047437_13	eggNOG-mapper	483218.BACPEC_01166	PcfJ-like protein	NA
UHGV-0047437_13	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0047437_13	Structural annotation	PF14284	NA	NA
UHGV-0047437_14	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0047437_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0047437_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0047437_15	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-0047437_15	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0047437_15	Pfam	PF00075	RNase H	RNase_H
UHGV-0047437_15	COG	COG0328	Ribonuclease HI	NA
UHGV-0047437_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0047437_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0047437_16	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0047437_16	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0047437_19	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0047437_19	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0047437_19	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0047437_20	UniRef90	UniRef90_UPI00117746F9	helix-turn-helix domain-containing protein	NA
UHGV-0047437_20	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0047437_21	PHROG	phrog_750	NA	unknown function
UHGV-0047437_21	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0047437_21	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0047437_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0047437_23	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0047437_23	UniRef90	UniRef90_A0A3D5LQZ9	XRE family transcriptional regulator	NA
UHGV-0047437_23	eggNOG-mapper	1211819.CALK01000005_gene2436	Peptidase S24-like	NA
UHGV-0047437_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047437_23	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0047437_23	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0047437_24	PHROG	phrog_20936	NA	unknown function
UHGV-0047437_24	UniRef90	UniRef90_A0A660M5N1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0047437_24	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0047437_24	Structural annotation	PF06114	NA	NA
UHGV-0047437_27	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0047437_27	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0047437_27	UniRef90	UniRef90_A0A174QJ64	PemK-like protein	NA
UHGV-0047437_27	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0047437_27	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0047437_27	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0047437_27	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0047437_28	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0047437_28	PHROG	phrog_95	integrase	integration and excision
UHGV-0047437_28	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-0047437_28	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0047437_28	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0047437_28	Pfam	PF07508	Recombinase	Recombinase
UHGV-0047437_28	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0047437_28	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0047437_28	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0047437_29	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0047437_29	PHROG	phrog_3513	endolysin	lysis
UHGV-0047437_29	UniRef90	UniRef90_A0A3D5LQR9	Muramidase (Flagellum-specific)	NA
UHGV-0047437_29	eggNOG-mapper	411902.CLOBOL_03862	COG NOG16320 non supervised orthologous group	NA
UHGV-0047437_29	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0047437_29	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0047437_29	Structural annotation	PF01157, MF_01354, NF009358, NF003303, COG1705, COG2139	NA	NA
UHGV-0047437_30	PHROG	phrog_199	holin	lysis
UHGV-0047437_30	UniRef90	UniRef90_A0A3D5LQS4	Holin	NA
UHGV-0047437_30	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0047437_30	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0047437_30	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0047437_30	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0047437_30	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0047437_31	PHROG	phrog_2566	NA	unknown function