UHGV-0047471

Genome information

Genome length 37,505 bps

CDS count 61

Completeness 82.30% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047471
vOTU ID	vOTU-038657
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_28539
BioSample	SAMEA2042436
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.08
Jumbo phage	No

Genome content
Genome length	37,505 bps
GC content	53.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	88.39%
Average CDS length	546.34 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047471_2	PHROG	phrog_6616	tail protein	tail
UHGV-0047471_2	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0047471_2	eggNOG-mapper	1232443.BAIA02000078_gene16	NA	NA
UHGV-0047471_2	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0047471_3	PHROG	phrog_1194	NA	unknown function
UHGV-0047471_3	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0047471_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0047471_4	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0047471_4	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0047471_5	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0047471_6	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0047471_6	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0047471_6	Pfam	PF16478	NA	DUF5055
UHGV-0047471_6	Structural annotation	PF16478	NA	NA
UHGV-0047471_7	PHROG	phrog_158	major tail protein	tail
UHGV-0047471_7	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0047471_7	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0047471_7	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0047471_7	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0047471_8	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0047471_9	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0047471_10	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0047471_11	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0047471_11	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0047471_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0047471_11	Structural annotation	TIGR01560	NA	NA
UHGV-0047471_12	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0047471_12	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0047471_12	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0047471_12	Pfam	PF17236	NA	DUF5309
UHGV-0047471_12	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0047471_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0047471_14	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0047471_14	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0047471_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0047471_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0047471_15	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0047471_15	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0047471_15	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0047471_15	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0047471_15	COG	COG5410	NA	NA
UHGV-0047471_15	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0047471_16	PHROG	phrog_26910	NA	unknown function
UHGV-0047471_17	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0047471_17	PHROG	phrog_95	integrase	integration and excision
UHGV-0047471_17	UniRef90	UniRef90_A0A7X7CF84	Recombinase family protein	NA
UHGV-0047471_17	eggNOG-mapper	1203606.HMPREF1526_00251	Resolvase, N terminal domain	NA
UHGV-0047471_17	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0047471_17	Pfam	PF07508	Recombinase	Recombinase
UHGV-0047471_17	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0047471_17	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0047471_19	PHROG	phrog_6244	NA	unknown function
UHGV-0047471_19	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0047471_22	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0047471_22	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0047471_22	eggNOG-mapper	536233.CLO_1560	DNA-packaging protein gp3	NA
UHGV-0047471_22	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0047471_22	Structural annotation	PF16677	NA	NA
UHGV-0047471_28	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0047471_28	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0047471_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0047471_31	UniRef90	UniRef90_A0A844JSD9	MazG domain-containing protein	NA
UHGV-0047471_31	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0047471_31	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0047471_32	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0047471_32	PHROG	phrog_200	lipoprotein	other
UHGV-0047471_32	UniRef90	UniRef90_A0A1Y3TPZ8	Membrane protease	NA
UHGV-0047471_32	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-0047471_32	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0047471_32	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0047471_32	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0047471_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0047471_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0047471_34	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0047471_34	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0047471_34	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0047471_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0047471_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0047471_36	PHROG	phrog_4433	NA	unknown function
UHGV-0047471_36	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0047471_36	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0047471_36	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0047471_37	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0047471_37	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0047471_37	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0047471_37	Pfam	PF06356	NA	DUF1064
UHGV-0047471_37	Structural annotation	PF06356	NA	NA
UHGV-0047471_39	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0047471_39	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0047471_39	UniRef90	UniRef90_UPI00137A9A0F	ATP-binding protein	NA
UHGV-0047471_39	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0047471_39	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0047471_39	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0047471_39	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0047471_39	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0047471_40	PHROG	phrog_15768	NA	unknown function
UHGV-0047471_40	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-0047471_40	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0047471_40	Pfam	PF19808	NA	DUF6291
UHGV-0047471_40	Structural annotation	PF19808	NA	NA
UHGV-0047471_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0047471_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0047471_41	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0047471_41	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0047471_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0047471_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0047471_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0047471_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0047471_41	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0047471_42	PHROG	phrog_4973	NA	unknown function
UHGV-0047471_42	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0047471_42	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0047471_42	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0047471_42	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0047471_43	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0047471_43	UniRef90	UniRef90_A0A1I0TSJ1	Helix-turn-helix domain of resolvase	NA
UHGV-0047471_43	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0047471_43	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0047471_43	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0047471_43	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0047471_43	Structural annotation	PF07463, PF13392	NA	NA
UHGV-0047471_44	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0047471_45	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0047471_45	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0047471_45	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0047471_45	Pfam	PF05772	NinB protein	NinB
UHGV-0047471_45	Structural annotation	PF05772	NA	NA
UHGV-0047471_46	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0047471_46	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0047471_47	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0047471_47	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0047471_47	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0047471_49	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0047471_50	PHROG	phrog_1029	NA	unknown function
UHGV-0047471_50	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0047471_50	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0047471_51	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0047471_51	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0047471_51	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0047471_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047471_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0047471_53	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0047471_55	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0047471_56	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0047471_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0047471_56	UniRef90	UniRef90_A0A328UFC2	HTH cro/C1-type domain-containing protein	NA
UHGV-0047471_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047471_56	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0047471_56	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0047471_57	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0047471_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047471_57	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0047471_57	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0047471_58	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0047471_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047471_58	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0047471_59	KOfam	K14059	int; integrase	NA
UHGV-0047471_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0047471_59	UniRef90	UniRef90_A0A3D2G173	Tyr recombinase domain-containing protein	NA
UHGV-0047471_59	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0047471_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0047471_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0047471_59	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA