UHGV-0047511

Genome information

Genome length 34,676 bps

CDS count 56

Completeness 93.60% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047511
vOTU ID	vOTU-062654
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3567
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.60% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.62
Jumbo phage	No

Genome content
Genome length	34,676 bps
GC content	54.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	86.06%
Average CDS length	534.64 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047511_1	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0047511_1	PHROG	phrog_24603	NA	unknown function
UHGV-0047511_1	UniRef90	UniRef90_E2ZIC9	Spo0A_C domain-containing protein	NA
UHGV-0047511_1	eggNOG-mapper	1226322.HMPREF1545_01110	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0047511_1	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0047511_1	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0047511_1	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0047511_2	PHROG	phrog_263	holin	lysis
UHGV-0047511_2	UniRef90	UniRef90_E2ZIC2	Holin, SPP1 family	NA
UHGV-0047511_2	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-0047511_2	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0047511_2	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0047511_2	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0047511_3	PHROG	phrog_1863	NA	unknown function
UHGV-0047511_3	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0047511_4	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0047511_4	PHROG	phrog_894	endolysin	lysis
UHGV-0047511_4	UniRef90	UniRef90_A0A1C5NY12	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-0047511_4	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0047511_4	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0047511_4	COG	COG3108	NA	NA
UHGV-0047511_4	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0047511_5	PHROG	phrog_28526	NA	unknown function
UHGV-0047511_5	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-0047511_5	eggNOG-mapper	748224.HMPREF9436_00155	NA	NA
UHGV-0047511_5	Pfam	PF04255	NA	DUF433
UHGV-0047511_7	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0047511_7	COG	COG5492	NA	NA
UHGV-0047511_8	PHROG	phrog_9534	head protein	head and packaging
UHGV-0047511_8	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0047511_8	Structural annotation	PF20747	NA	NA
UHGV-0047511_9	PHROG	phrog_538	minor tail protein	tail
UHGV-0047511_9	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0047511_9	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0047511_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0047511_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0047511_10	PHROG	phrog_36410	NA	unknown function
UHGV-0047511_10	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-0047511_10	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0047511_10	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0047511_11	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0047511_11	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0047511_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0047511_12	PHROG	phrog_3266	tail completion	connector
UHGV-0047511_12	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0047511_12	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-0047511_12	Structural annotation	PF12691	NA	NA
UHGV-0047511_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0047511_13	UniRef90	UniRef90_UPI0015CF23D2	minor capsid protein	NA
UHGV-0047511_13	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0047511_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0047511_13	Structural annotation	PF11114	NA	NA
UHGV-0047511_14	PHROG	phrog_3366	NA	unknown function
UHGV-0047511_14	Structural annotation	PF20536	NA	NA
UHGV-0047511_15	PHROG	phrog_267	major head protein	head and packaging
UHGV-0047511_15	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0047511_15	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0047511_15	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0047511_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0047511_16	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0047511_16	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0047511_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0047511_16	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0047511_17	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0047511_17	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0047511_17	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0047511_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0047511_19	UniRef90	UniRef90_A0A1C5NZK4	Phage minor capsid protein 2	NA
UHGV-0047511_19	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0047511_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0047511_19	COG	COG2369	NA	NA
UHGV-0047511_19	Structural annotation	PF06152	NA	NA
UHGV-0047511_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0047511_20	UniRef90	UniRef90_E2ZNR0	Putative phage minor capsid protein	NA
UHGV-0047511_20	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-0047511_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0047511_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0047511_21	PHROG	phrog_10250	NA	unknown function
UHGV-0047511_21	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0047511_21	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0047511_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0047511_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0047511_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0047511_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0047511_22	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0047511_22	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0047511_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0047511_23	PHROG	phrog_13321	NA	unknown function
UHGV-0047511_23	UniRef90	UniRef90_E2ZNR3	Radical SAM domain protein	NA
UHGV-0047511_23	eggNOG-mapper	748224.HMPREF9436_03343	DNA photolyase activity	NA
UHGV-0047511_23	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0047511_23	COG	COG1533	DNA repair photolyase	NA
UHGV-0047511_23	Structural annotation	PF20903, MF_00660, NF033668, COG1180	NA	NA
UHGV-0047511_24	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0047511_24	UniRef90	UniRef90_E2ZNR4	ParB domain-containing protein	NA
UHGV-0047511_24	eggNOG-mapper	748224.HMPREF9436_03344	ParB-like nuclease domain	NA
UHGV-0047511_24	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0047511_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0047511_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0047511_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0047511_25	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0047511_26	KOfam	K03700	recU; recombination protein U	NA
UHGV-0047511_26	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0047511_26	UniRef90	UniRef90_A0A1C5P0D5	Holliday junction resolvase RecU	NA
UHGV-0047511_26	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0047511_26	Pfam	PF03838	Recombination protein U	RecU
UHGV-0047511_26	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0047511_26	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0047511_30	PHROG	phrog_3253	NA	unknown function
UHGV-0047511_30	UniRef90	UniRef90_A0A2J4JRQ6	Resolvase	NA
UHGV-0047511_30	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-0047511_30	Structural annotation	PF18618	NA	NA
UHGV-0047511_32	PHROG	phrog_6568	NA	unknown function
UHGV-0047511_32	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0047511_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0047511_33	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0047511_33	UniRef90	UniRef90_A0A3E2UF94	DNA methylase N-4	NA
UHGV-0047511_33	eggNOG-mapper	936573.HMPREF1147_1705	DEAD-like helicases superfamily	NA
UHGV-0047511_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0047511_33	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0047511_33	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0047511_34	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0047511_34	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-0047511_34	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0047511_34	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0047511_34	Structural annotation	PF05565	NA	NA
UHGV-0047511_35	PHROG	phrog_15768	NA	unknown function
UHGV-0047511_35	UniRef90	UniRef90_A0A3F3JUK4	NA	NA
UHGV-0047511_35	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0047511_35	Pfam	PF19808	NA	DUF6291
UHGV-0047511_35	Structural annotation	PF19808	NA	NA
UHGV-0047511_36	Structural annotation	PF20964, PF13384, NF011523	NA	NA
UHGV-0047511_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0047511_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0047511_37	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0047511_37	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0047511_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0047511_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0047511_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0047511_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0047511_37	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0047511_38	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0047511_38	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0047511_38	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0047511_38	Pfam	PF04404	ERF superfamily	ERF
UHGV-0047511_38	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0047511_39	PHROG	phrog_38771	NA	unknown function
UHGV-0047511_42	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0047511_42	eggNOG-mapper	762051.LKI_01980	NA	NA
UHGV-0047511_42	Pfam	PF05339	NA	DUF739
UHGV-0047511_42	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0047511_42	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0047511_43	UniRef90	UniRef90_E2ZNT7	HTH_17 domain-containing protein	NA
UHGV-0047511_43	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0047511_44	PHROG	phrog_37083	NA	unknown function
UHGV-0047511_45	PHROG	phrog_7711	NA	unknown function
UHGV-0047511_45	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0047511_45	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-0047511_47	PHROG	phrog_1221	NA	unknown function
UHGV-0047511_47	UniRef90	UniRef90_E2ZNU3	Phage/plasmid-related protein TIGR03299	NA
UHGV-0047511_47	eggNOG-mapper	748224.HMPREF9436_03374	NA	NA
UHGV-0047511_47	Pfam	PF06067	NA	DUF932
UHGV-0047511_47	NCBIFam	TIGR03299.1	phage/plasmid-like protein TIGR03299	NA
UHGV-0047511_47	Structural annotation	PF06067, TIGR03299	NA	NA
UHGV-0047511_49	PHROG	phrog_32852	NA	unknown function
UHGV-0047511_52	UniRef90	UniRef90_A0A6N7TMW8	HTH cro/C1-type domain-containing protein	NA
UHGV-0047511_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0047511_53	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0047511_53	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0047511_53	UniRef90	UniRef90_A0A6N7TQ25	Helix-turn-helix domain-containing protein	NA
UHGV-0047511_53	eggNOG-mapper	748224.HMPREF9436_03379	sequence-specific DNA binding	NA
UHGV-0047511_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047511_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0047511_54	eggNOG-mapper	1280676.AUJO01000009_gene1947	NA	NA
UHGV-0047511_54	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-0047511_56	KOfam	K14059	int; integrase	NA
UHGV-0047511_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0047511_56	UniRef90	UniRef90_A0A3F3JU91	Tyr recombinase domain-containing protein	NA
UHGV-0047511_56	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0047511_56	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0047511_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0047511_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0047511_56	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA