UHGV-0047695

Genome information

Genome length 26,666 bps

CDS count 37

Completeness 67.07% (medium-quality)

geNomad score 0.9576

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047695
vOTU ID	vOTU-034476
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_3464
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9576
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.02
Jumbo phage	No

Genome content
Genome length	26,666 bps
GC content	37.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	86.95%
Average CDS length	628.22 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047695_1	KOfam	K14647	vpr; minor extracellular serine protease Vpr [EC:3.4.21.-]	NA
UHGV-0047695_1	PHROG	phrog_3677	protease	other
UHGV-0047695_1	UniRef90	UniRef90_D4S1Q8	Peptidase, S8/S53 family	NA
UHGV-0047695_1	eggNOG-mapper	511680.BUTYVIB_02030	COG COG1404 Subtilisin-like serine proteases	NA
UHGV-0047695_1	Pfam	PF00082	Subtilase family	Peptidase_S8
UHGV-0047695_1	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-0047695_2	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0047695_2	PHROG	phrog_7573	NA	unknown function
UHGV-0047695_2	UniRef90	UniRef90_R5LSV4	CotJC protein	NA
UHGV-0047695_2	eggNOG-mapper	511680.BUTYVIB_02029	PFAM Manganese containing catalase	NA
UHGV-0047695_2	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0047695_2	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0047695_2	Structural annotation	PF05067, MF_00931, TIGR04535, COG3546	NA	NA
UHGV-0047695_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0047695_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0047695_3	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-0047695_3	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0047695_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0047695_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0047695_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0047695_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0047695_3	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0047695_4	PHROG	phrog_2695	NA	unknown function
UHGV-0047695_4	UniRef90	UniRef90_A0A1Y4RMA4	SIR2_2 domain-containing protein	NA
UHGV-0047695_4	eggNOG-mapper	1504823.CCMM01000008_gene1082	NAD+ binding	NA
UHGV-0047695_4	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-0047695_4	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-0047695_4	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0047695_4	Structural annotation	PF13289	NA	NA
UHGV-0047695_5	PHROG	phrog_20886	NA	unknown function
UHGV-0047695_5	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0047695_5	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-0047695_5	Structural annotation	PF06114	NA	NA
UHGV-0047695_6	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0047695_6	PHROG	phrog_19856	NA	unknown function
UHGV-0047695_6	UniRef90	UniRef90_A0A1C5ZNG9	Restriction endonuclease	NA
UHGV-0047695_6	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0047695_6	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0047695_6	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0047695_6	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0047695_7	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0047695_7	UniRef90	UniRef90_R6RUQ3	HTH cro/C1-type domain-containing protein	NA
UHGV-0047695_7	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0047695_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0047695_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047695_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0047695_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0047695_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0047695_8	UniRef90	UniRef90_A0A7X8VE37	Helix-turn-helix domain-containing protein	NA
UHGV-0047695_8	eggNOG-mapper	340099.Teth39_2244	transcriptional regulator, XRE family	NA
UHGV-0047695_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0047695_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047695_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0047695_8	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0047695_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0047695_9	UniRef90	UniRef90_A0A7X8VE41	Helix-turn-helix transcriptional regulator (Fragment)	NA
UHGV-0047695_9	eggNOG-mapper	679201.HMPREF9334_00656	Helix-turn-helix XRE-family like proteins	NA
UHGV-0047695_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047695_11	UniRef90	UniRef90_UPI001D08AC69	helix-turn-helix domain-containing protein	NA
UHGV-0047695_11	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0047695_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0047695_11	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0047695_12	PHROG	phrog_20593	NA	unknown function
UHGV-0047695_15	eggNOG-mapper	1235798.C817_04758	NA	NA
UHGV-0047695_17	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0047695_17	PHROG	phrog_19349	NA	unknown function
UHGV-0047695_17	UniRef90	UniRef90_A0A7C6NST5	Lytic transglycosylase domain-containing protein	NA
UHGV-0047695_17	eggNOG-mapper	411459.RUMOBE_01755	Transglycosylase SLT domain protein	NA
UHGV-0047695_17	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0047695_17	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0047695_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0047695_19	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0047695_19	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0047695_20	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0047695_20	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0047695_20	UniRef90	UniRef90_C4Z812	Ribonuclease H	NA
UHGV-0047695_20	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0047695_20	Pfam	PF00075	RNase H	RNase_H
UHGV-0047695_20	COG	COG0328	Ribonuclease HI	NA
UHGV-0047695_20	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0047695_21	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0047695_22	PHROG	phrog_8470	NA	unknown function
UHGV-0047695_22	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0047695_22	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0047695_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0047695_22	Structural annotation	PF14284	NA	NA
UHGV-0047695_23	PHROG	phrog_15077	NA	unknown function
UHGV-0047695_23	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-0047695_23	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0047695_23	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0047695_25	PHROG	phrog_7566	NA	unknown function
UHGV-0047695_25	UniRef90	UniRef90_UPI0015935946	phosphoenolpyruvate carboxykinase	NA
UHGV-0047695_25	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0047695_26	PHROG	phrog_24368	NA	unknown function
UHGV-0047695_28	Structural annotation	PF07141	NA	NA
UHGV-0047695_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0047695_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0047695_29	UniRef90	UniRef90_UPI00164C1039	phage terminase large subunit	NA
UHGV-0047695_29	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0047695_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0047695_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0047695_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0047695_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0047695_30	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0047695_30	eggNOG-mapper	592031.GCWU000322_00075	NA	NA
UHGV-0047695_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0047695_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0047695_31	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0047695_31	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0047695_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0047695_31	COG	COG2369	NA	NA
UHGV-0047695_31	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0047695_32	UniRef90	UniRef90_R5LJS9	ATP-dependent Clp protease ATP-binding subunit ClpB	NA
UHGV-0047695_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0047695_33	UniRef90	UniRef90_A0A1C5VV13	Phage minor structural protein GP20	NA
UHGV-0047695_33	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0047695_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0047695_33	Structural annotation	PF06810	NA	NA
UHGV-0047695_34	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0047695_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0047695_36	PHROG	phrog_3366	NA	unknown function
UHGV-0047695_36	Structural annotation	PF20536, TIGR02126	NA	NA