UHGV-0047739

Genome information

Genome length 36,527 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047739
vOTU ID	vOTU-012799
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_5433
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.54
Jumbo phage	No

Genome content
Genome length	36,527 bps
GC content	40.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.16%
Average CDS length	719.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047739_1	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0047739_1	UniRef90	UniRef90_UPI001897AC3D	phage minor capsid protein	NA
UHGV-0047739_1	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0047739_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0047739_1	COG	COG2369	NA	NA
UHGV-0047739_1	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0047739_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-0047739_2	UniRef90	UniRef90_UPI00189C53D6	phage capsid protein	NA
UHGV-0047739_2	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0047739_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0047739_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0047739_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0047739_3	UniRef90	UniRef90_UPI00189AB5B3	terminase family protein	NA
UHGV-0047739_3	eggNOG-mapper	1304866.K413DRAFT_3034	Phage terminase, large subunit, PBSX family	NA
UHGV-0047739_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0047739_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0047739_3	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0047739_4	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0047739_4	UniRef90	UniRef90_UPI001B3C9B19	helix-turn-helix domain-containing protein	NA
UHGV-0047739_4	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0047739_4	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0047739_4	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0047739_4	Structural annotation	PF07141	NA	NA
UHGV-0047739_5	Structural annotation	TIGR01636	NA	NA
UHGV-0047739_6	Structural annotation	PF14282, COG5570	NA	NA
UHGV-0047739_7	Structural annotation	NF041288, COG4830	NA	NA
UHGV-0047739_8	PHROG	phrog_25754	NA	unknown function
UHGV-0047739_8	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0047739_8	Structural annotation	PF10842, MF_00436, TIGR02383	NA	NA
UHGV-0047739_9	PHROG	phrog_98	NA	unknown function
UHGV-0047739_9	UniRef90	UniRef90_UPI00189E57B4	YopX family protein	NA
UHGV-0047739_9	eggNOG-mapper	742767.HMPREF9456_03352	YopX protein	NA
UHGV-0047739_9	Pfam	PF09643	YopX protein	YopX
UHGV-0047739_9	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0047739_9	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0047739_12	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0047739_12	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0047739_12	UniRef90	UniRef90_A0A2N0ULU7	SF3 helicase domain-containing protein	NA
UHGV-0047739_12	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0047739_12	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0047739_12	Pfam	PF19263	NA	DUF5906
UHGV-0047739_12	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0047739_12	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0047739_12	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0047739_12	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0047739_13	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0047739_13	UniRef90	UniRef90_A0A374ND86	NA	NA
UHGV-0047739_13	eggNOG-mapper	1410670.JHXF01000015_gene2272	NA	NA
UHGV-0047739_13	Pfam	PF05037	NA	DUF669
UHGV-0047739_13	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0047739_14	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0047739_14	UniRef90	UniRef90_A0A374N329	VRR-NUC domain-containing protein	NA
UHGV-0047739_14	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0047739_14	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0047739_14	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-0047739_15	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0047739_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0047739_15	UniRef90	UniRef90_A0A374N1T8	Helicase	NA
UHGV-0047739_15	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0047739_15	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0047739_15	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0047739_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0047739_15	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0047739_15	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0047739_16	PHROG	phrog_1366	NA	unknown function
UHGV-0047739_16	UniRef90	UniRef90_R6S946	AAA domain-containing protein	NA
UHGV-0047739_16	eggNOG-mapper	1410670.JHXF01000015_gene2269	AAA domain	NA
UHGV-0047739_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0047739_16	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0047739_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0047739_17	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0047739_17	UniRef90	UniRef90_UPI0019171ADA	siphovirus Gp157 family protein	NA
UHGV-0047739_17	eggNOG-mapper	632292.Calhy_0748	Siphovirus Gp157	NA
UHGV-0047739_17	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0047739_17	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0047739_18	PHROG	phrog_15609	NA	unknown function
UHGV-0047739_18	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0047739_18	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0047739_18	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0047739_19	PHROG	phrog_8470	NA	unknown function
UHGV-0047739_19	UniRef90	UniRef90_UPI0018E45158	PcfJ domain-containing protein	NA
UHGV-0047739_19	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0047739_19	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0047739_19	Structural annotation	PF14284	NA	NA
UHGV-0047739_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0047739_23	UniRef90	UniRef90_A0A2N0ULV0	Helix-turn-helix domain protein	NA
UHGV-0047739_23	eggNOG-mapper	445335.CBN_3090	Helix-turn-helix domain	NA
UHGV-0047739_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047739_23	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0047739_24	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0047739_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0047739_24	UniRef90	UniRef90_A0A2N0ULR3	HTH-type transcriptional regulator ImmR	NA
UHGV-0047739_24	eggNOG-mapper	649747.HMPREF0083_01078	Transcriptional regulator	NA
UHGV-0047739_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047739_24	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0047739_25	PHROG	phrog_1914	NA	unknown function
UHGV-0047739_25	UniRef90	UniRef90_A0A2N0ULV1	Peptidase_M78 domain-containing protein	NA
UHGV-0047739_25	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0047739_25	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0047739_25	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0047739_25	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0047739_26	KOfam	K14059	int; integrase	NA
UHGV-0047739_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0047739_26	UniRef90	UniRef90_UPI000E4C7350	site-specific integrase	NA
UHGV-0047739_26	eggNOG-mapper	887325.HMPREF0381_0346	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0047739_26	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0047739_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0047739_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0047739_26	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0047739_27	eggNOG-mapper	999413.HMPREF1094_00199	NA	NA
UHGV-0047739_28	PHROG	phrog_443	holin	lysis
UHGV-0047739_28	UniRef90	UniRef90_R6MWB0	Conserved domain protein	NA
UHGV-0047739_28	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0047739_28	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0047739_28	Structural annotation	PF16945	NA	NA
UHGV-0047739_29	PHROG	phrog_1863	NA	unknown function
UHGV-0047739_29	UniRef90	UniRef90_UPI001E345E1F	hemolysin XhlA family protein	NA
UHGV-0047739_29	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0047739_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0047739_30	PHROG	phrog_833	endolysin	lysis
UHGV-0047739_30	UniRef90	UniRef90_R6MSP5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0047739_30	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0047739_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0047739_30	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0047739_30	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0047739_32	Structural annotation	PF01664	NA	NA
UHGV-0047739_33	PHROG	phrog_18190	NA	unknown function
UHGV-0047739_33	eggNOG-mapper	483218.BACPEC_01143	NA	NA
UHGV-0047739_33	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0047739_34	PHROG	phrog_1194	NA	unknown function
UHGV-0047739_34	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0047739_34	Pfam	PF20458	NA	DUF6711
UHGV-0047739_34	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0047739_35	KOfam	K10866	RAD50; DNA repair protein RAD50 [EC:3.6.-.-]	NA
UHGV-0047739_35	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0047739_35	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0047739_35	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0047739_35	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0047739_35	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0047739_36	eggNOG-mapper	1408311.JNJM01000003_gene2963	NA	NA
UHGV-0047739_36	Structural annotation	PF07718, PF02883, NF007398, COG3121	NA	NA
UHGV-0047739_38	PHROG	phrog_706	NA	unknown function
UHGV-0047739_38	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0047739_38	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0047739_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0047739_38	Structural annotation	PF06854	NA	NA
UHGV-0047739_39	PHROG	phrog_11299	NA	unknown function
UHGV-0047739_39	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0047739_39	Structural annotation	PF10666	NA	NA
UHGV-0047739_40	PHROG	phrog_3099	NA	unknown function
UHGV-0047739_40	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0047739_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0047739_41	PHROG	phrog_3266	tail completion	connector
UHGV-0047739_41	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0047739_41	Structural annotation	PF20765	NA	NA
UHGV-0047739_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0047739_42	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0047739_42	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0047739_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0047739_42	Structural annotation	PF11114	NA	NA
UHGV-0047739_43	PHROG	phrog_3366	NA	unknown function
UHGV-0047739_43	Pfam	PF20536	NA	DUF6751
UHGV-0047739_43	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0047739_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0047739_44	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0047739_45	PHROG	phrog_422	major head protein	head and packaging
UHGV-0047739_45	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0047739_45	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0047739_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0047739_46	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-0047739_46	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0047739_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0047739_46	Structural annotation	PF06810	NA	NA