UHGV-0047918

Genome information

Genome length 51,116 bps

CDS count 79

Completeness 90.63% (high-quality)

geNomad score 0.9650

Prediction confidence Confident

Genome information
Genome ID	UHGV-0047918
vOTU ID	vOTU-065804
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4358
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.63% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9650
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.11
Jumbo phage	No

Genome content
Genome length	51,116 bps
GC content	41.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	86.40%
Average CDS length	563.47 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0047918_1	PHROG	phrog_6616	tail protein	tail
UHGV-0047918_1	UniRef90	UniRef90_A0A2Y9BMC1	Peptidase S74 domain-containing protein	NA
UHGV-0047918_1	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0047918_1	COG	COG4926	Phage-related protein	NA
UHGV-0047918_1	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0047918_2	PHROG	phrog_1194	NA	unknown function
UHGV-0047918_2	eggNOG-mapper	1229517.AMFD01000023_gene1305	NA	NA
UHGV-0047918_2	Pfam	PF20458	NA	DUF6711
UHGV-0047918_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0047918_3	PHROG	phrog_28918	NA	unknown function
UHGV-0047918_3	UniRef90	UniRef90_R9KPG7	SLT domain-containing protein	NA
UHGV-0047918_3	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0047918_3	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0047918_4	PHROG	phrog_2546	NA	unknown function
UHGV-0047918_4	eggNOG-mapper	1391647.AVSV01000021_gene2233	NA	NA
UHGV-0047918_4	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0047918_4	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0047918_6	PHROG	phrog_36112	NA	unknown function
UHGV-0047918_6	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0047918_6	Structural annotation	PF16478	NA	NA
UHGV-0047918_7	PHROG	phrog_158	major tail protein	tail
UHGV-0047918_7	UniRef90	UniRef90_A0A7G5N1B9	Phage tail protein	NA
UHGV-0047918_7	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0047918_7	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0047918_8	PHROG	phrog_78	tail terminator	connector
UHGV-0047918_8	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0047918_9	PHROG	phrog_419	NA	unknown function
UHGV-0047918_9	UniRef90	UniRef90_A0A0E2BM07	NA	NA
UHGV-0047918_9	eggNOG-mapper	665959.HMPREF1013_05319	NA	NA
UHGV-0047918_9	Structural annotation	PF14083	NA	NA
UHGV-0047918_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0047918_10	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0047918_10	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0047918_10	AcrCatalog	cluster_24841	NA	NA
UHGV-0047918_10	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0047918_11	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0047918_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0047918_12	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0047918_14	PHROG	phrog_29	major head protein	head and packaging
UHGV-0047918_14	UniRef90	UniRef90_A0A1M5D7T9	Phage major capsid protein E	NA
UHGV-0047918_14	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0047918_14	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0047918_14	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0047918_15	PHROG	phrog_909	major head protein	head and packaging
UHGV-0047918_15	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0047918_15	eggNOG-mapper	1118054.CAGW01000102_gene4699	NA	NA
UHGV-0047918_16	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0047918_16	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0047918_16	Structural annotation	PF14265	NA	NA
UHGV-0047918_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0047918_18	UniRef90	UniRef90_A0A7G5N3V2	Phage portal protein	NA
UHGV-0047918_18	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0047918_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0047918_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0047918_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0047918_19	UniRef90	UniRef90_UPI000CDA2C77	helix-turn-helix domain-containing protein	NA
UHGV-0047918_19	eggNOG-mapper	1347392.CCEZ01000005_gene1225	NA	NA
UHGV-0047918_19	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0047918_20	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0047918_20	UniRef90	UniRef90_A0A174UKZ9	NA	NA
UHGV-0047918_20	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0047918_20	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0047918_20	COG	COG5410	NA	NA
UHGV-0047918_20	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0047918_25	PHROG	phrog_3886	NA	unknown function
UHGV-0047918_25	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-0047918_26	KOfam	K03744	lemA; LemA protein	NA
UHGV-0047918_26	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0047918_26	UniRef90	UniRef90_A0A7G5N1D5	LemA family protein	NA
UHGV-0047918_26	eggNOG-mapper	1298920.KI911353_gene2688	LemA family	NA
UHGV-0047918_26	Pfam	PF04011	LemA family	LemA
UHGV-0047918_26	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0047918_26	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0047918_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0047918_29	UniRef90	UniRef90_A0A318EMC2	DNA-packaging protein gp3	NA
UHGV-0047918_31	UniRef90	UniRef90_A0A3A8W8U2	XRE family transcriptional regulator	NA
UHGV-0047918_31	eggNOG-mapper	411490.ANACAC_00697	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0047918_31	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0047918_31	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0047918_32	AcrCatalog	cluster_11486	NA	NA
UHGV-0047918_35	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0047918_35	PHROG	phrog_95	integrase	integration and excision
UHGV-0047918_35	UniRef90	UniRef90_A0A174JKJ4	DNA-invertase hin	NA
UHGV-0047918_35	eggNOG-mapper	1157490.EL26_02935	Recombinase	NA
UHGV-0047918_35	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0047918_35	Pfam	PF07508	Recombinase	Recombinase
UHGV-0047918_35	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0047918_35	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0047918_37	PHROG	phrog_15411	NA	unknown function
UHGV-0047918_37	UniRef90	UniRef90_R6NXQ9	NA	NA
UHGV-0047918_37	eggNOG-mapper	1499684.CCNP01000020_gene2275	NA	NA
UHGV-0047918_37	Pfam	PF13271	NA	DUF4062
UHGV-0047918_37	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA
UHGV-0047918_37	Structural annotation	PF13271, PF14277, MF_00526, NF006747, NF006931, COG4271, COG3373	NA	NA
UHGV-0047918_38	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0047918_38	UniRef90	UniRef90_UPI001D05D528	radical SAM protein	NA
UHGV-0047918_38	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0047918_38	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0047918_38	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0047918_39	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0047918_39	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0047918_39	UniRef90	UniRef90_A0A1M5C2Q1	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0047918_39	eggNOG-mapper	33035.JPJF01000080_gene123	Helix-turn-helix XRE-family like proteins	NA
UHGV-0047918_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0047918_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047918_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0047918_39	Structural annotation	PF01381, NF041677, COG1396	NA	NA
UHGV-0047918_41	PHROG	phrog_26824	NA	unknown function
UHGV-0047918_41	UniRef90	UniRef90_UPI0010D18565	DNA primase	NA
UHGV-0047918_41	eggNOG-mapper	203119.Cthe_1888	DNA primase activity	NA
UHGV-0047918_41	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0047918_43	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0047918_43	PHROG	phrog_11992	NA	unknown function
UHGV-0047918_43	UniRef90	UniRef90_A0A7G5N1E4	ZnF_CHCC domain-containing protein	NA
UHGV-0047918_43	eggNOG-mapper	397290.C810_04580	CHC2 zinc finger	NA
UHGV-0047918_43	PADLOC	drt-UG29	DRT	DRT
UHGV-0047918_43	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0047918_43	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0047918_43	Structural annotation	PF01807	NA	NA
UHGV-0047918_45	PHROG	phrog_24386	NA	unknown function
UHGV-0047918_45	eggNOG-mapper	397290.C810_01513	COG NOG28949 non supervised orthologous group	NA
UHGV-0047918_45	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0047918_46	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0047918_46	UniRef90	UniRef90_A0A6N7SRA2	ERCC4 domain-containing protein	NA
UHGV-0047918_46	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0047918_46	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0047918_46	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0047918_47	eggNOG-mapper	1298920.KI911353_gene2716	NA	NA
UHGV-0047918_47	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0047918_48	PHROG	phrog_28936	NA	unknown function
UHGV-0047918_48	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0047918_48	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0047918_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0047918_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0047918_49	UniRef90	UniRef90_A0A1C7I6V7	Single-stranded DNA-binding protein	NA
UHGV-0047918_49	eggNOG-mapper	33035.JPJF01000015_gene4944	NA	NA
UHGV-0047918_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0047918_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0047918_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0047918_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0047918_49	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0047918_51	Structural annotation	PF15591, MF_01549, NF000331, COG5475	NA	NA
UHGV-0047918_52	PHROG	phrog_1029	NA	unknown function
UHGV-0047918_52	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0047918_52	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0047918_52	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0047918_53	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0047918_53	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-0047918_55	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0047918_55	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0047918_55	UniRef90	UniRef90_A0A6N7SQ41	MBL fold metallo-hydrolase	NA
UHGV-0047918_55	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0047918_55	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0047918_55	dbAPIS	APIS058	NA	NA
UHGV-0047918_55	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0047918_55	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0047918_56	eggNOG-mapper	1095770.CAHE01000088_gene1836	NA	NA
UHGV-0047918_58	PHROG	phrog_25456	NA	unknown function
UHGV-0047918_59	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0047918_59	Structural annotation	PF10400, MF_01019, NF010671, COG0140	NA	NA
UHGV-0047918_60	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0047918_60	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0047918_60	UniRef90	UniRef90_UPI001D078A39	recombinase RecT	NA
UHGV-0047918_60	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0047918_60	Pfam	PF03837	RecT family	RecT
UHGV-0047918_60	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0047918_60	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0047918_63	PHROG	phrog_25176	NA	unknown function
UHGV-0047918_63	eggNOG-mapper	1304877.KI519399_gene4992	NA	NA
UHGV-0047918_66	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0047918_66	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0047918_66	UniRef90	UniRef90_A0A7G5N1F9	AAA_15 domain-containing protein	NA
UHGV-0047918_66	eggNOG-mapper	1121342.AUCO01000012_gene1723	nuclear chromosome segregation	NA
UHGV-0047918_66	Pfam	PF13555	P-loop containing region of AAA domain	AAA_29
UHGV-0047918_66	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0047918_66	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0047918_67	Structural annotation	PF02237, MF_00257, NF037951, COG4013	NA	NA
UHGV-0047918_72	PHROG	phrog_6058	NA	unknown function
UHGV-0047918_72	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0047918_72	eggNOG-mapper	665956.HMPREF1032_00623	NA	NA
UHGV-0047918_73	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0047918_73	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0047918_73	UniRef90	UniRef90_A0A1I0GCY2	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0047918_73	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0047918_73	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0047918_73	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0047918_73	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0047918_73	Structural annotation	PF03374, PF10543, TIGR02681, COG3645	NA	NA
UHGV-0047918_75	UniRef90	UniRef90_UPI00164AD36B	helix-turn-helix transcriptional regulator	NA
UHGV-0047918_75	eggNOG-mapper	997346.HMPREF9374_3915	Helix-turn-helix XRE-family like proteins	NA
UHGV-0047918_75	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047918_75	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0047918_76	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0047918_76	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0047918_76	UniRef90	UniRef90_UPI00164A12C2	helix-turn-helix transcriptional regulator	NA
UHGV-0047918_76	eggNOG-mapper	476272.RUMHYD_01734	sequence-specific DNA binding	NA
UHGV-0047918_76	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0047918_76	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0047918_76	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0047918_77	PHROG	phrog_87	metallo-protease	other
UHGV-0047918_77	UniRef90	UniRef90_A0A414AEF1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0047918_77	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0047918_77	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0047918_77	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0047918_77	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0047918_78	KOfam	K14059	int; integrase	NA
UHGV-0047918_78	PHROG	phrog_1	integrase	integration and excision
UHGV-0047918_78	UniRef90	UniRef90_UPI00085BCEAF	tyrosine-type recombinase/integrase	NA
UHGV-0047918_78	eggNOG-mapper	411460.RUMTOR_02457	NA	NA
UHGV-0047918_78	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0047918_78	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0047918_78	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0047918_78	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0047918_79	KOfam	K20793	NAA50, NAT5; N-alpha-acetyltransferase 50 [EC:2.3.1.258]	NA
UHGV-0047918_79	UniRef90	UniRef90_UPI001D013FE7	GNAT family N-acetyltransferase	NA
UHGV-0047918_79	eggNOG-mapper	903814.ELI_2107	Acetyltransferase (GNAT) domain	NA
UHGV-0047918_79	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0047918_79	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA