UHGV-0048178

Genome information

Genome length 37,445 bps

CDS count 64

Completeness 65.71% (medium-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048178
vOTU ID	vOTU-035679
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_15229
BioSample	SAMEA2042402
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.32
Jumbo phage	No

Genome content
Genome length	37,445 bps
GC content	36.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.07%
Average CDS length	543.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048178_1	PHROG	phrog_29	major head protein	head and packaging
UHGV-0048178_1	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0048178_1	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0048178_1	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0048178_1	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0048178_2	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0048178_2	Structural annotation	PF21169	NA	NA
UHGV-0048178_3	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0048178_4	PHROG	phrog_1863	NA	unknown function
UHGV-0048178_4	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0048178_5	PHROG	phrog_1129	holin	lysis
UHGV-0048178_5	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0048178_5	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0048178_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0048178_5	Structural annotation	PF06946	NA	NA
UHGV-0048178_6	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0048178_6	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0048178_7	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0048178_7	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0048178_8	Structural annotation	PF05657	NA	NA
UHGV-0048178_9	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-0048178_9	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0048178_11	PHROG	phrog_36112	NA	unknown function
UHGV-0048178_11	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0048178_11	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0048178_11	Structural annotation	PF16478	NA	NA
UHGV-0048178_13	PHROG	phrog_28918	NA	unknown function
UHGV-0048178_13	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0048178_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0048178_14	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0048178_15	UniRef90	UniRef90_UPI001D0E5D20	CopG family transcriptional regulator	NA
UHGV-0048178_15	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-0048178_16	Structural annotation	PF07875	NA	NA
UHGV-0048178_17	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0048178_17	UniRef90	UniRef90_A0A8D9PG17	Prophage antirepressor	NA
UHGV-0048178_17	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-0048178_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0048178_17	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0048178_17	COG	COG3617	Prophage antirepressor	NA
UHGV-0048178_17	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-0048178_20	PHROG	phrog_1194	NA	unknown function
UHGV-0048178_20	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0048178_20	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0048178_21	Structural annotation	PF07761	NA	NA
UHGV-0048178_22	PHROG	phrog_6616	tail protein	tail
UHGV-0048178_22	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0048178_22	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0048178_22	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0048178_22	COG	COG4926	Phage-related protein	NA
UHGV-0048178_22	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0048178_24	KOfam	K07273	acm; lysozyme	NA
UHGV-0048178_24	PHROG	phrog_6745	endolysin	lysis
UHGV-0048178_24	UniRef90	UniRef90_A0A7U9NG87	Autolytic lysozyme	NA
UHGV-0048178_24	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0048178_24	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0048178_24	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0048178_24	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0048178_26	Structural annotation	PF03444, MF_00732, NF003025, COG1321	NA	NA
UHGV-0048178_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0048178_27	UniRef90	UniRef90_UPI001D081DA8	helix-turn-helix domain-containing protein	NA
UHGV-0048178_27	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0048178_27	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0048178_27	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0048178_27	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0048178_28	UniRef90	UniRef90_UPI000E4D6E81	helix-turn-helix domain-containing protein	NA
UHGV-0048178_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048178_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0048178_28	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0048178_32	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0048178_32	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-0048178_32	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0048178_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0048178_32	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0048178_32	COG	COG3617	Prophage antirepressor	NA
UHGV-0048178_32	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0048178_33	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0048178_33	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0048178_33	Structural annotation	PF10552	NA	NA
UHGV-0048178_36	PHROG	phrog_26861	NA	unknown function
UHGV-0048178_36	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0048178_36	eggNOG-mapper	1235802.C823_04125	NA	NA
UHGV-0048178_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0048178_36	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0048178_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0048178_36	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0048178_38	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0048178_38	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048178_38	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0048178_38	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0048178_38	Pfam	PF13476	AAA domain	AAA_23
UHGV-0048178_38	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0048178_38	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0048178_39	PHROG	phrog_2164	NA	unknown function
UHGV-0048178_39	eggNOG-mapper	1174684.EBMC1_14695	NA	NA
UHGV-0048178_40	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0048178_40	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0048178_40	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0048178_40	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0048178_40	Pfam	PF03837	RecT family	RecT
UHGV-0048178_40	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0048178_40	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0048178_40	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0048178_42	PHROG	phrog_25456	NA	unknown function
UHGV-0048178_43	PHROG	phrog_15480	methyltransferase	other
UHGV-0048178_43	UniRef90	UniRef90_A0A1C5WPJ5	Spermidine synthase	NA
UHGV-0048178_43	eggNOG-mapper	1232447.BAHW02000015_gene1049	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine	NA
UHGV-0048178_43	COG	COG4262	Predicted spermidine synthase with an N-terminal membrane domain	NA
UHGV-0048178_43	Structural annotation	PF02527, MF_02217, NF041650, COG2263	NA	NA
UHGV-0048178_44	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0048178_44	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0048178_44	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0048178_44	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0048178_44	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0048178_44	dbAPIS	APIS058	NA	NA
UHGV-0048178_44	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0048178_44	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0048178_45	PHROG	phrog_20891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048178_45	UniRef90	UniRef90_UPI0013794BCD	HNH endonuclease	NA
UHGV-0048178_45	eggNOG-mapper	864702.OsccyDRAFT_0645	HNH endonuclease	NA
UHGV-0048178_45	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0048178_45	Structural annotation	PF13392	NA	NA
UHGV-0048178_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0048178_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0048178_46	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0048178_46	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0048178_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0048178_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0048178_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0048178_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0048178_46	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0048178_49	PHROG	phrog_19106	NA	unknown function
UHGV-0048178_49	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0048178_49	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0048178_49	Structural annotation	TIGR01453	NA	NA
UHGV-0048178_51	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0048178_52	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0048178_54	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0048178_54	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0048178_54	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-0048178_54	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0048178_56	PHROG	phrog_9804	NA	unknown function
UHGV-0048178_56	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-0048178_56	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0048178_56	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0048178_56	Structural annotation	PF11417	NA	NA
UHGV-0048178_59	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0048178_59	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0048178_59	eggNOG-mapper	658088.HMPREF0987_01415	Excisionase from transposon Tn916	NA
UHGV-0048178_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048178_59	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0048178_59	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0048178_59	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0048178_60	KOfam	K14059	int; integrase	NA
UHGV-0048178_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0048178_60	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-0048178_60	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-0048178_60	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0048178_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0048178_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0048178_60	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0048178_62	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0048178_62	Structural annotation	NF033819	NA	NA
UHGV-0048178_64	PHROG	phrog_16490	NA	unknown function
UHGV-0048178_64	eggNOG-mapper	397290.C810_01328	NA	NA