UHGV-0048300

Genome information

Genome length 38,841 bps

CDS count 56

Completeness 99.42% (high-quality)

geNomad score 0.9656

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048300
vOTU ID	vOTU-014177
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4095
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9656
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.29
Jumbo phage	No

Genome content
Genome length	38,841 bps
GC content	40.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.18%
Average CDS length	642.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048300_1	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0048300_1	UniRef90	UniRef90_UPI000F51ADCF	NA	NA
UHGV-0048300_1	eggNOG-mapper	575594.ACOH01000003_gene808	NA	NA
UHGV-0048300_1	Pfam	PF06356	NA	DUF1064
UHGV-0048300_1	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0048300_4	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0048300_4	UniRef90	UniRef90_UPI001C5ACF00	Rha family transcriptional regulator	NA
UHGV-0048300_4	eggNOG-mapper	768486.EHR_09450	ORF6C domain	NA
UHGV-0048300_4	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0048300_4	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0048300_4	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0048300_4	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0048300_4	Structural annotation	PF10552, PF10543, TIGR02681, COG3646	NA	NA
UHGV-0048300_10	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0048300_10	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0048300_10	UniRef90	UniRef90_S5NE39	AAA domain-containing protein	NA
UHGV-0048300_10	eggNOG-mapper	1423732.BALS01000105_gene422	IstB-like ATP binding protein	NA
UHGV-0048300_10	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0048300_10	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0048300_11	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0048300_11	UniRef90	UniRef90_A0A1Z5IZR7	Phage DNA replication protein	NA
UHGV-0048300_11	eggNOG-mapper	1423807.BACO01000085_gene2475	DnaD domain protein	NA
UHGV-0048300_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0048300_12	PHROG	phrog_398	NA	unknown function
UHGV-0048300_12	UniRef90	UniRef90_UPI00136CF42E	putative HNHc nuclease	NA
UHGV-0048300_12	eggNOG-mapper	1423814.HMPREF0549_1764	Putative HNHc nuclease	NA
UHGV-0048300_12	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0048300_12	Structural annotation	PF16784	NA	NA
UHGV-0048300_13	PHROG	phrog_8492	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0048300_13	UniRef90	UniRef90_A0A7W3TZZ1	NA	NA
UHGV-0048300_13	eggNOG-mapper	1423767.BALU01000006_gene801	NA	NA
UHGV-0048300_13	Pfam	PF06378	NA	DUF1071
UHGV-0048300_13	Structural annotation	PF06378, TIGR00607, COG4712	NA	NA
UHGV-0048300_14	UniRef90	UniRef90_UPI0015BFAD45	6-phospho-beta-glucosidase	NA
UHGV-0048300_20	PHROG	phrog_6634	NA	unknown function
UHGV-0048300_20	UniRef90	UniRef90_A0A1V0NIA4	NA	NA
UHGV-0048300_20	eggNOG-mapper	1423775.BAMN01000014_gene786	NA	NA
UHGV-0048300_22	UniRef90	UniRef90_UPI001F16C223	helix-turn-helix domain-containing protein	NA
UHGV-0048300_22	eggNOG-mapper	1234679.BN424_3330	Helix-turn-helix XRE-family like proteins	NA
UHGV-0048300_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0048300_23	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0048300_23	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0048300_23	UniRef90	UniRef90_UPI001784EB39	LexA family transcriptional regulator	NA
UHGV-0048300_23	eggNOG-mapper	1423807.BACO01000085_gene2465	Peptidase S24-like	NA
UHGV-0048300_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048300_23	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0048300_23	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0048300_23	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0048300_24	PHROG	phrog_16443	NA	unknown function
UHGV-0048300_24	eggNOG-mapper	334390.LAF_0659	NA	NA
UHGV-0048300_25	PHROG	phrog_33215	NA	unknown function
UHGV-0048300_25	eggNOG-mapper	1423814.HMPREF0549_1749	LysM domain	NA
UHGV-0048300_25	COG	COG1388	LysM repeat	NA
UHGV-0048300_26	KOfam	K14059	int; integrase	NA
UHGV-0048300_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0048300_26	UniRef90	UniRef90_UPI0017842838	site-specific integrase	NA
UHGV-0048300_26	eggNOG-mapper	525309.HMPREF0494_1868	Belongs to the 'phage' integrase family	NA
UHGV-0048300_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0048300_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0048300_26	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0048300_27	KOfam	K07273	acm; lysozyme	NA
UHGV-0048300_27	PHROG	phrog_291	endolysin	lysis
UHGV-0048300_27	UniRef90	UniRef90_UPI001C242071	glycoside hydrolase family 25	NA
UHGV-0048300_27	eggNOG-mapper	1567453.A0A0A1ERA5_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0048300_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0048300_27	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0048300_27	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0048300_28	PHROG	phrog_2609	holin	lysis
UHGV-0048300_28	UniRef90	UniRef90_UPI001C2295D1	phage holin, LLH family	NA
UHGV-0048300_28	eggNOG-mapper	1423814.HMPREF0549_1806	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0048300_28	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0048300_29	PHROG	phrog_1009	NA	unknown function
UHGV-0048300_29	eggNOG-mapper	575594.ACOH01000003_gene772	NA	NA
UHGV-0048300_30	PHROG	phrog_37283	NA	unknown function
UHGV-0048300_31	UniRef90	UniRef90_A0A3G3E977	XkdX family protein	NA
UHGV-0048300_33	PHROG	phrog_6183	minor tail protein	tail
UHGV-0048300_33	UniRef90	UniRef90_UPI001C24BE7E	BppU family phage baseplate upper protein	NA
UHGV-0048300_33	eggNOG-mapper	525309.HMPREF0494_1763	NA	NA
UHGV-0048300_33	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0048300_33	Structural annotation	PF10651	NA	NA
UHGV-0048300_34	PHROG	phrog_17955	esterase/lipase	other
UHGV-0048300_34	UniRef90	UniRef90_UPI0017863E14	GDSL-type esterase/lipase family protein	NA
UHGV-0048300_34	eggNOG-mapper	1605.Lani381_0370	Prophage endopeptidase tail	NA
UHGV-0048300_34	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0048300_36	PHROG	phrog_17369	NA	unknown function
UHGV-0048300_36	eggNOG-mapper	1069534.LRC_07390	NA	NA
UHGV-0048300_37	KOfam	K10400	KIF15; kinesin family member 15	NA
UHGV-0048300_37	PHROG	phrog_16040	virion structural protein	head and packaging
UHGV-0048300_37	eggNOG-mapper	257314.LJ_0324	gp58-like protein	NA
UHGV-0048300_37	COG	COG0845	Multidrug efflux pump subunit AcrA (membrane-fusion protein)	NA
UHGV-0048300_38	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0048300_38	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0048300_38	UniRef90	UniRef90_UPI001F09B52C	phage tail protein	NA
UHGV-0048300_38	eggNOG-mapper	557436.Lreu_1105	Prophage endopeptidase tail	NA
UHGV-0048300_38	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0048300_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0048300_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0048300_38	Structural annotation	PF06605, PF18994, TIGR01665, COG3500, COG3953	NA	NA
UHGV-0048300_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0048300_39	UniRef90	UniRef90_UPI001C237714	phage tail family protein	NA
UHGV-0048300_39	eggNOG-mapper	557436.Lreu_1106	Phage tail protein	NA
UHGV-0048300_39	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0048300_39	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0048300_40	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0048300_40	UniRef90	UniRef90_UPI001C2316B3	tape measure protein	NA
UHGV-0048300_40	eggNOG-mapper	1423814.HMPREF0549_0116	Phage tail tape measure protein TP901	NA
UHGV-0048300_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0048300_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0048300_40	COG	COG3953	SLT domain protein	NA
UHGV-0048300_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0048300_41	PHROG	phrog_2629	NA	unknown function
UHGV-0048300_42	PHROG	phrog_1346	tail protein	tail
UHGV-0048300_42	UniRef90	UniRef90_UPI001C219464	phage tail assembly chaperone	NA
UHGV-0048300_42	eggNOG-mapper	1423814.HMPREF0549_0114	Phage tail assembly chaperone proteins, TAC	NA
UHGV-0048300_42	Pfam	PF06896	Phage tail assembly chaperone proteins, TAC	Phage_TAC_3
UHGV-0048300_42	Structural annotation	PF06896	NA	NA
UHGV-0048300_43	PHROG	phrog_88	major tail protein	tail
UHGV-0048300_43	UniRef90	UniRef90_UPI001C249E55	phage tail protein	NA
UHGV-0048300_43	eggNOG-mapper	1423814.HMPREF0549_0113	Phage tail tube protein	NA
UHGV-0048300_43	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0048300_43	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0048300_44	PHROG	phrog_1217	tail protein	tail
UHGV-0048300_44	UniRef90	UniRef90_UPI001C23FF09	NA	NA
UHGV-0048300_44	eggNOG-mapper	1423814.HMPREF0549_0112	NA	NA
UHGV-0048300_44	Pfam	PF05657	NA	DUF806
UHGV-0048300_44	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0048300_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0048300_45	UniRef90	UniRef90_UPI001C227C4C	HK97 gp10 family phage protein	NA
UHGV-0048300_45	eggNOG-mapper	1423814.HMPREF0549_0111	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0048300_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0048300_45	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0048300_45	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0048300_46	UniRef90	UniRef90_UPI001C21ED18	phage head closure protein	NA
UHGV-0048300_46	eggNOG-mapper	1423814.HMPREF0549_0110	Phage head-tail joining protein	NA
UHGV-0048300_46	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0048300_46	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0048300_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0048300_47	UniRef90	UniRef90_UPI001C230898	head-tail connector protein	NA
UHGV-0048300_47	eggNOG-mapper	334390.LAF_0474	NA	NA
UHGV-0048300_47	Structural annotation	TIGR01560	NA	NA
UHGV-0048300_48	KOfam	K06904	NA	NA
UHGV-0048300_48	PHROG	phrog_2263	major head protein	head and packaging
UHGV-0048300_48	UniRef90	UniRef90_UPI001C242A85	phage major capsid protein	NA
UHGV-0048300_48	eggNOG-mapper	1423814.HMPREF0549_0108	Phage capsid family	NA
UHGV-0048300_48	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0048300_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0048300_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0048300_48	COG	COG3740	Phage head maturation protease	NA
UHGV-0048300_48	Structural annotation	PF04586, PF05065, MF_04119, TIGR01554, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0048300_49	PHROG	phrog_12	portal protein	head and packaging
UHGV-0048300_49	UniRef90	UniRef90_UPI001C24BB3B	phage portal protein	NA
UHGV-0048300_49	eggNOG-mapper	1423814.HMPREF0549_0107	Phage portal protein	NA
UHGV-0048300_49	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0048300_49	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0048300_49	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0048300_49	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0048300_50	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0048300_50	UniRef90	UniRef90_UPI001C239DFA	terminase large subunit	NA
UHGV-0048300_50	eggNOG-mapper	1423814.HMPREF0549_0105	Phage Terminase	NA
UHGV-0048300_50	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0048300_50	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0048300_50	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0048300_50	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0048300_51	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0048300_51	UniRef90	UniRef90_UPI001C23E090	phage terminase small subunit P27 family	NA
UHGV-0048300_51	eggNOG-mapper	1423814.HMPREF0549_0104	Phage terminase, small subunit	NA
UHGV-0048300_51	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0048300_51	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0048300_51	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0048300_51	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0048300_52	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048300_52	UniRef90	UniRef90_UPI001C2429EE	HNH endonuclease	NA
UHGV-0048300_52	eggNOG-mapper	1423814.HMPREF0549_0103	HNH nucleases	NA
UHGV-0048300_52	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0048300_52	Structural annotation	PF05766	NA	NA
UHGV-0048300_54	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0048300_54	UniRef90	UniRef90_C7XUU7	Phage transcriptional regulator, ArpU family	NA
UHGV-0048300_54	eggNOG-mapper	944562.HMPREF9102_0402	NA	NA
UHGV-0048300_54	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0048300_54	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0048300_55	PHROG	phrog_28913	NA	unknown function