UHGV-0048302

Genome information

Genome length 33,173 bps

CDS count 47

Completeness 91.14% (high-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048302
vOTU ID	vOTU-071244
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4093
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.62
Jumbo phage	No

Genome content
Genome length	33,173 bps
GC content	34.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.29%
Average CDS length	653.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048302_1	eggNOG-mapper	226185.EF_2807	NA	NA
UHGV-0048302_2	PHROG	phrog_6907	NA	unknown function
UHGV-0048302_2	UniRef90	UniRef90_UPI001A8F63C0	collagen-like protein	NA
UHGV-0048302_2	eggNOG-mapper	1158607.UAU_01046	NA	NA
UHGV-0048302_3	PHROG	phrog_9625	NA	unknown function
UHGV-0048302_3	eggNOG-mapper	1158607.UAU_01045	NA	NA
UHGV-0048302_4	PHROG	phrog_6042	minor head protein	head and packaging
UHGV-0048302_4	UniRef90	UniRef90_C9BVE8	BppU_N domain-containing protein	NA
UHGV-0048302_4	eggNOG-mapper	1201292.DR75_1500	NA	NA
UHGV-0048302_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0048302_4	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0048302_5	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0048302_5	UniRef90	UniRef90_A0A1L8WI77	Phage minor structural protein	NA
UHGV-0048302_5	eggNOG-mapper	1158614.I592_02417	Prophage endopeptidase tail	NA
UHGV-0048302_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0048302_5	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0048302_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-0048302_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0048302_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0048302_5	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-0048302_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0048302_6	UniRef90	UniRef90_A0A132Z2M0	Phage tail protein	NA
UHGV-0048302_6	eggNOG-mapper	1158604.I591_00412	tail component	NA
UHGV-0048302_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0048302_6	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0048302_7	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0048302_7	UniRef90	UniRef90_A0A2C9X4D2	TMP_3 domain-containing protein	NA
UHGV-0048302_7	eggNOG-mapper	1158604.I591_00411	Phage tail tape measure protein, TP901 family	NA
UHGV-0048302_7	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0048302_7	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0048302_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0048302_8	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0048302_8	eggNOG-mapper	1158604.I591_00410	NA	NA
UHGV-0048302_9	PHROG	phrog_88	major tail protein	tail
UHGV-0048302_9	UniRef90	UniRef90_A0A4V3RFT0	Phage tail protein	NA
UHGV-0048302_9	eggNOG-mapper	1158604.I591_00409	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-0048302_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0048302_9	COG	COG5492	NA	NA
UHGV-0048302_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0048302_10	PHROG	phrog_525	NA	unknown function
UHGV-0048302_10	eggNOG-mapper	1158604.I591_00408	NA	NA
UHGV-0048302_10	Pfam	PF20765	NA	DUF6838
UHGV-0048302_10	Structural annotation	PF20765	NA	NA
UHGV-0048302_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0048302_11	UniRef90	UniRef90_UPI0018832E9E	HK97 gp10 family phage protein	NA
UHGV-0048302_11	eggNOG-mapper	1158604.I591_00407	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0048302_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0048302_11	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0048302_12	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0048302_12	UniRef90	UniRef90_R3I753	50S ribosomal protein L23	NA
UHGV-0048302_12	eggNOG-mapper	1158604.I591_00406	NA	NA
UHGV-0048302_12	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0048302_13	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0048302_13	eggNOG-mapper	1158604.I591_00405	NA	NA
UHGV-0048302_14	PHROG	phrog_8832	NA	unknown function
UHGV-0048302_14	eggNOG-mapper	1158604.I591_00404	NA	NA
UHGV-0048302_15	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0048302_15	UniRef90	UniRef90_UPI00065DF913	NA	NA
UHGV-0048302_15	eggNOG-mapper	1158604.I591_00403	NA	NA
UHGV-0048302_15	Pfam	PF17236	NA	DUF5309
UHGV-0048302_15	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-0048302_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0048302_16	UniRef90	UniRef90_A0A1Y3HWY1	NA	NA
UHGV-0048302_16	eggNOG-mapper	1158604.I591_00402	NA	NA
UHGV-0048302_16	Pfam	PF14265	NA	DUF4355
UHGV-0048302_16	Structural annotation	PF14265	NA	NA
UHGV-0048302_17	PHROG	phrog_5859	NA	unknown function
UHGV-0048302_17	eggNOG-mapper	1158604.I591_00401	NA	NA
UHGV-0048302_17	Structural annotation	PF03927, MF_02200, NF009840, COG3471	NA	NA
UHGV-0048302_18	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0048302_18	UniRef90	UniRef90_A0A7U8FBT1	Minor head protein	NA
UHGV-0048302_18	eggNOG-mapper	1158604.I591_00400	cell adhesion	NA
UHGV-0048302_18	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0048302_18	COG	COG2369	NA	NA
UHGV-0048302_18	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0048302_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0048302_19	UniRef90	UniRef90_A0A511J5V4	Portal protein	NA
UHGV-0048302_19	eggNOG-mapper	1158604.I591_00399	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0048302_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0048302_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0048302_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0048302_20	PHROG	phrog_5902	NA	unknown function
UHGV-0048302_20	UniRef90	UniRef90_A0A511J545	Terminase_3 domain-containing protein	NA
UHGV-0048302_20	eggNOG-mapper	1158604.I591_00398	Phage terminase large subunit	NA
UHGV-0048302_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0048302_20	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0048302_20	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-0048302_21	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0048302_21	UniRef90	UniRef90_A0A132P3V5	Small subunit of terminase	NA
UHGV-0048302_21	eggNOG-mapper	1158604.I591_00397	Phage terminase small subunit	NA
UHGV-0048302_21	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0048302_21	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0048302_21	COG	COG5484	NA	NA
UHGV-0048302_21	Structural annotation	PF10668, NF040601, COG5484	NA	NA
UHGV-0048302_22	PHROG	phrog_1202	NA	unknown function
UHGV-0048302_22	eggNOG-mapper	1140001.I571_01149	NA	NA
UHGV-0048302_22	Structural annotation	PF18789	NA	NA
UHGV-0048302_23	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0048302_23	UniRef90	UniRef90_A0A8G1S6S1	ArpU family transcriptional regulator	NA
UHGV-0048302_23	eggNOG-mapper	768486.EHR_09840	NA	NA
UHGV-0048302_23	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0048302_23	Structural annotation	PF04545, TIGR01637, COG1342	NA	NA
UHGV-0048302_24	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0048302_24	UniRef90	UniRef90_A0A132PAL7	Transcriptional regulator	NA
UHGV-0048302_24	eggNOG-mapper	768486.EHR_00690	NA	NA
UHGV-0048302_24	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0048302_24	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0048302_25	PHROG	phrog_3302	NA	unknown function
UHGV-0048302_25	UniRef90	UniRef90_Q47835	ArpT	NA
UHGV-0048302_25	eggNOG-mapper	1140001.I571_01143	NA	NA
UHGV-0048302_25	Structural annotation	PF09953, MF_00906, NF000331, COG4873	NA	NA
UHGV-0048302_26	PHROG	phrog_15055	NA	unknown function
UHGV-0048302_27	PHROG	phrog_16527	NA	unknown function
UHGV-0048302_28	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0048302_28	UniRef90	UniRef90_R2Y937	Methyltransferase	NA
UHGV-0048302_28	eggNOG-mapper	1158614.I592_03399	methyltransferase	NA
UHGV-0048302_28	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0048302_28	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-0048302_28	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0048302_28	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0048302_29	PHROG	phrog_8160	NA	unknown function
UHGV-0048302_30	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0048302_30	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0048302_30	UniRef90	UniRef90_A0A366UGC6	AAA domain-containing protein	NA
UHGV-0048302_30	eggNOG-mapper	768486.EHR_02705	DNA replication protein	NA
UHGV-0048302_30	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0048302_30	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0048302_30	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0048302_31	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0048302_31	UniRef90	UniRef90_A0A132P688	Replication protein	NA
UHGV-0048302_31	eggNOG-mapper	279281.Q6J1V6_9CAUD	calcium ion binding	NA
UHGV-0048302_31	Structural annotation	TIGR01610	NA	NA
UHGV-0048302_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0048302_32	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0048302_32	UniRef90	UniRef90_R2M8D3	Phage RecT family recombinase	NA
UHGV-0048302_32	eggNOG-mapper	1104325.M7W_1336	RecT family	NA
UHGV-0048302_32	Pfam	PF03837	RecT family	RecT
UHGV-0048302_32	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0048302_32	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0048302_32	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0048302_33	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048302_33	UniRef90	UniRef90_UPI00190EB095	YqaJ viral recombinase family protein	NA
UHGV-0048302_33	eggNOG-mapper	1140001.I571_02083	YqaJ-like viral recombinase domain	NA
UHGV-0048302_33	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0048302_33	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0048302_33	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0048302_33	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0048302_34	eggNOG-mapper	768486.EHR_00770	NA	NA
UHGV-0048302_35	eggNOG-mapper	768486.EHR_02740	NA	NA
UHGV-0048302_36	PHROG	phrog_4690	NA	unknown function
UHGV-0048302_36	eggNOG-mapper	768486.EHR_02745	NA	NA
UHGV-0048302_37	PHROG	phrog_11542	NA	unknown function
UHGV-0048302_37	eggNOG-mapper	565664.EFXG_03936	NA	NA
UHGV-0048302_38	PHROG	phrog_1655	NA	unknown function
UHGV-0048302_38	eggNOG-mapper	565664.EFXG_01799	NA	NA
UHGV-0048302_39	PHROG	phrog_3220	NA	unknown function
UHGV-0048302_39	UniRef90	UniRef90_A0A385AEZ7	NA	NA
UHGV-0048302_39	eggNOG-mapper	1069533.Sinf_0767	NA	NA
UHGV-0048302_39	Pfam	PF09954	NA	DUF2188
UHGV-0048302_39	Structural annotation	PF09954	NA	NA
UHGV-0048302_40	PHROG	phrog_3150	NA	unknown function
UHGV-0048302_40	eggNOG-mapper	580331.Thit_1411	NA	NA
UHGV-0048302_41	PHROG	phrog_7989	NA	unknown function
UHGV-0048302_41	eggNOG-mapper	1158610.UC3_02384	NA	NA
UHGV-0048302_42	UniRef90	UniRef90_A0A1L8WIC2	HTH cro/C1-type domain-containing protein	NA
UHGV-0048302_42	eggNOG-mapper	1158604.I591_01800	Helix-turn-helix XRE-family like proteins	NA
UHGV-0048302_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048302_42	Structural annotation	PF21291, NF041951, COG3655	NA	NA
UHGV-0048302_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0048302_43	UniRef90	UniRef90_A0A132ZBR8	Cro/Cl family transcriptional regulator	NA
UHGV-0048302_43	eggNOG-mapper	1158604.I591_01801	Helix-turn-helix XRE-family like proteins	NA
UHGV-0048302_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0048302_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0048302_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0048302_44	PHROG	phrog_87	metallo-protease	other
UHGV-0048302_44	UniRef90	UniRef90_I6RXW2	Peptidase_M78 domain-containing protein	NA
UHGV-0048302_44	eggNOG-mapper	1158604.I591_01802	IrrE N-terminal-like domain	NA
UHGV-0048302_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0048302_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0048302_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0048302_45	PHROG	phrog_1847	NA	unknown function
UHGV-0048302_45	UniRef90	UniRef90_A0A828QG72	T5orf172 domain-containing protein	NA
UHGV-0048302_45	eggNOG-mapper	445974.CLORAM_02968	T5orf172	NA
UHGV-0048302_45	Pfam	PF13250	NA	DUF4041
UHGV-0048302_45	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0048302_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0048302_45	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0048302_46	KOfam	K14059	int; integrase	NA
UHGV-0048302_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0048302_46	UniRef90	UniRef90_A0A366UDG8	Tyr recombinase domain-containing protein	NA
UHGV-0048302_46	eggNOG-mapper	565664.EFXG_01811	Phage integrase family	NA
UHGV-0048302_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0048302_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0048302_46	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0048302_47	KOfam	K18892	patB, rscB, lmrC, satB; ATP-binding cassette, subfamily B, multidrug efflux pump	NA
UHGV-0048302_47	PHROG	phrog_2392	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0048302_47	UniRef90	UniRef90_A0A377KI63	ABC transporter ATP-binding protein	NA
UHGV-0048302_47	eggNOG-mapper	565664.EFXG_02337	ABC transporter transmembrane region	NA
UHGV-0048302_47	Pfam	PF00664	ABC transporter transmembrane region	ABC_membrane
UHGV-0048302_47	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0048302_47	COG	COG1132	ABC-type multidrug transport system, ATPase and permease component	NA
UHGV-0048302_47	Structural annotation	PF00664, PF00005, MF_01005, TIGR02204, COG1132	NA	NA