UHGV-0048308

Genome information

Genome length 37,387 bps

CDS count 55

Completeness 96.80% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048308
vOTU ID	vOTU-075777
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4105
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.18
Jumbo phage	No

Genome content
Genome length	37,387 bps
GC content	35.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.35%
Average CDS length	623.78 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048308_1	eggNOG-mapper	1104325.M7W_2080	NA	NA
UHGV-0048308_2	KOfam	K14059	int; integrase	NA
UHGV-0048308_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0048308_2	UniRef90	UniRef90_A0A7H4KTC4	Site-specific tyrosine recombinase XerC-family protein	NA
UHGV-0048308_2	eggNOG-mapper	565664.EFXG_01131	Pfam:Integrase_AP2	NA
UHGV-0048308_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0048308_2	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0048308_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0048308_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0048308_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0048308_3	PHROG	phrog_806	NA	unknown function
UHGV-0048308_3	UniRef90	UniRef90_A0A133CJ08	NA	NA
UHGV-0048308_3	eggNOG-mapper	1300150.EMQU_2343	NA	NA
UHGV-0048308_3	Pfam	PF11611	NA	DUF4352
UHGV-0048308_3	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0048308_4	PHROG	phrog_87	metallo-protease	other
UHGV-0048308_4	UniRef90	UniRef90_A0A829A593	Peptidase_M78 domain-containing protein	NA
UHGV-0048308_4	eggNOG-mapper	565664.EFXG_01135	IrrE N-terminal-like domain	NA
UHGV-0048308_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0048308_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0048308_5	UniRef90	UniRef90_A0A0M2B0U9	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0048308_5	eggNOG-mapper	1158604.I591_00376	Helix-turn-helix XRE-family like proteins	NA
UHGV-0048308_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048308_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0048308_5	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0048308_7	PHROG	phrog_14546	NA	unknown function
UHGV-0048308_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0048308_8	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0048308_8	UniRef90	UniRef90_A0A829F4Z7	Bro family toxin-antitoxin system, toxin component	NA
UHGV-0048308_8	eggNOG-mapper	1158604.I591_00377	BRO family, N-terminal domain	NA
UHGV-0048308_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0048308_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0048308_8	COG	COG3617	Prophage antirepressor	NA
UHGV-0048308_8	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0048308_9	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0048308_9	UniRef90	UniRef90_A0A0V7Y7Y5	Helix-turn-helix domain protein	NA
UHGV-0048308_9	eggNOG-mapper	1140001.I571_01701	Helix-turn-helix	NA
UHGV-0048308_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048308_10	PHROG	phrog_823	NA	unknown function
UHGV-0048308_10	UniRef90	UniRef90_A0A132ZII2	NA	NA
UHGV-0048308_10	eggNOG-mapper	1104325.M7W_2073	NA	NA
UHGV-0048308_10	Pfam	PF05595	NA	DUF771
UHGV-0048308_10	COG	COG4707	Prophage pi2 protein 07	NA
UHGV-0048308_10	Structural annotation	PF05595, COG4707	NA	NA
UHGV-0048308_11	PHROG	phrog_13092	NA	unknown function
UHGV-0048308_11	UniRef90	UniRef90_A0A377L4P3	Succinate dehydrogenase cytochrome b558 subunit	NA
UHGV-0048308_11	eggNOG-mapper	1158604.I591_00380	NA	NA
UHGV-0048308_13	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0048308_13	UniRef90	UniRef90_A0A1V8Y9Q9	Antirepressor	NA
UHGV-0048308_13	eggNOG-mapper	768486.EHR_09450	ORF6C domain	NA
UHGV-0048308_13	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0048308_13	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0048308_13	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0048308_13	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0048308_14	PHROG	phrog_13506	NA	unknown function
UHGV-0048308_14	eggNOG-mapper	1158604.I591_00384	NA	NA
UHGV-0048308_15	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0048308_15	UniRef90	UniRef90_A0A132ZI75	NA	NA
UHGV-0048308_15	eggNOG-mapper	565664.EFXG_02873	NA	NA
UHGV-0048308_15	Pfam	PF06378	NA	DUF1071
UHGV-0048308_16	PHROG	phrog_398	NA	unknown function
UHGV-0048308_16	UniRef90	UniRef90_UPI00115945F6	putative HNHc nuclease	NA
UHGV-0048308_16	eggNOG-mapper	1158604.I591_00386	Putative HNHc nuclease	NA
UHGV-0048308_16	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0048308_16	Structural annotation	PF16784	NA	NA
UHGV-0048308_17	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0048308_17	UniRef90	UniRef90_A0A2C9XRI0	Phage_rep_org_N domain-containing protein	NA
UHGV-0048308_17	eggNOG-mapper	1104325.M7W_2067	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0048308_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0048308_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0048308_17	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0048308_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0048308_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0048308_18	UniRef90	UniRef90_A0A0M2B3G0	AAA domain-containing protein	NA
UHGV-0048308_18	eggNOG-mapper	1158604.I591_00388	DNA replication protein	NA
UHGV-0048308_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0048308_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0048308_18	Structural annotation	PF01695, MF_00377, NF006505, COG1484	NA	NA
UHGV-0048308_19	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0048308_19	UniRef90	UniRef90_UPI00159A1381	NA	NA
UHGV-0048308_19	eggNOG-mapper	1158604.I591_00389	NA	NA
UHGV-0048308_19	Pfam	PF06356	NA	DUF1064
UHGV-0048308_19	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-0048308_20	PHROG	phrog_7773	NA	unknown function
UHGV-0048308_20	UniRef90	UniRef90_A0A7V7KSZ0	Antitoxin	NA
UHGV-0048308_20	eggNOG-mapper	1104325.M7W_2064	NA	NA
UHGV-0048308_20	Structural annotation	PF19824, MF_01506, NF011893	NA	NA
UHGV-0048308_21	PHROG	phrog_5224	NA	unknown function
UHGV-0048308_21	eggNOG-mapper	565664.EFXG_03934	NA	NA
UHGV-0048308_21	Structural annotation	PF04936	NA	NA
UHGV-0048308_22	PHROG	phrog_1083	NA	unknown function
UHGV-0048308_22	UniRef90	UniRef90_A0A4U4E3I1	NA	NA
UHGV-0048308_22	eggNOG-mapper	768486.EHR_09500	NA	NA
UHGV-0048308_22	Pfam	PF06600	NA	DUF1140
UHGV-0048308_22	Structural annotation	PF06600, COG5420	NA	NA
UHGV-0048308_23	PHROG	phrog_121	NA	unknown function
UHGV-0048308_23	UniRef90	UniRef90_A0A6B3QE53	NA	NA
UHGV-0048308_23	eggNOG-mapper	768486.EHR_00710	NA	NA
UHGV-0048308_23	Pfam	PF07852	NA	DUF1642
UHGV-0048308_23	Structural annotation	PF07852	NA	NA
UHGV-0048308_24	PHROG	phrog_15055	NA	unknown function
UHGV-0048308_25	PHROG	phrog_10711	NA	unknown function
UHGV-0048308_25	UniRef90	UniRef90_Q47834	ArpS	NA
UHGV-0048308_25	eggNOG-mapper	768486.EHR_09515	NA	NA
UHGV-0048308_26	PHROG	phrog_15945	NA	unknown function
UHGV-0048308_26	UniRef90	UniRef90_C9B725	Predicted protein	NA
UHGV-0048308_27	PHROG	phrog_3302	NA	unknown function
UHGV-0048308_27	UniRef90	UniRef90_Q47835	ArpT	NA
UHGV-0048308_27	eggNOG-mapper	1140001.I571_02100	NA	NA
UHGV-0048308_27	Structural annotation	PF09953, MF_00906, NF000331, COG4873	NA	NA
UHGV-0048308_28	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0048308_28	UniRef90	UniRef90_Q47836	Putative autolysin regulatory protein ArpU	NA
UHGV-0048308_28	eggNOG-mapper	768486.EHR_09525	NA	NA
UHGV-0048308_28	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0048308_28	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0048308_29	PHROG	phrog_10973	NA	unknown function
UHGV-0048308_31	PHROG	phrog_9904	NA	unknown function
UHGV-0048308_31	UniRef90	UniRef90_A0A133CKK1	Thymidylate synthase	NA
UHGV-0048308_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0048308_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048308_32	UniRef90	UniRef90_A0A133CKZ7	HNH endonuclease	NA
UHGV-0048308_32	eggNOG-mapper	565664.EFXG_01782	HNH endonuclease	NA
UHGV-0048308_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0048308_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0048308_33	PHROG	phrog_5942	NA	unknown function
UHGV-0048308_33	eggNOG-mapper	565664.EFXG_01781	NA	NA
UHGV-0048308_34	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0048308_34	UniRef90	UniRef90_A0A132P4G0	Phage terminase, small subunit	NA
UHGV-0048308_34	eggNOG-mapper	565664.EFXG_01780	NA	NA
UHGV-0048308_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0048308_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0048308_35	UniRef90	UniRef90_A0A132ZDE4	Phage Terminase	NA
UHGV-0048308_35	eggNOG-mapper	565664.EFXG_01779	Phage Terminase	NA
UHGV-0048308_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0048308_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0048308_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0048308_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0048308_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0048308_36	UniRef90	UniRef90_I6T7N2	Phage portal protein, HK97 family	NA
UHGV-0048308_36	eggNOG-mapper	768486.EHR_09565	Phage portal protein	NA
UHGV-0048308_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0048308_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0048308_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0048308_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0048308_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0048308_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0048308_37	UniRef90	UniRef90_A0A132P4D5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0048308_37	eggNOG-mapper	768486.EHR_09570	Clp protease	NA
UHGV-0048308_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0048308_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0048308_37	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0048308_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0048308_38	UniRef90	UniRef90_I6SDV1	Major capsid protein	NA
UHGV-0048308_38	eggNOG-mapper	565664.EFXG_01776	Phage capsid family	NA
UHGV-0048308_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0048308_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0048308_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0048308_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0048308_39	PHROG	phrog_4417	NA	unknown function
UHGV-0048308_39	UniRef90	UniRef90_A0A0R1JPC3	Conserved bacteriophage protein	NA
UHGV-0048308_39	eggNOG-mapper	565664.EFXG_01775	NA	NA
UHGV-0048308_39	Structural annotation	PF03414, NF041524, COG1442	NA	NA
UHGV-0048308_40	PHROG	phrog_749	NA	unknown function
UHGV-0048308_40	UniRef90	UniRef90_I6S2A8	Gp6 protein	NA
UHGV-0048308_40	eggNOG-mapper	565664.EFXG_01774	NA	NA
UHGV-0048308_41	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0048308_41	UniRef90	UniRef90_A0A133CKL1	Head-tail adaptor protein	NA
UHGV-0048308_41	eggNOG-mapper	565664.EFXG_01773	NA	NA
UHGV-0048308_41	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0048308_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0048308_42	PHROG	phrog_5910	NA	unknown function
UHGV-0048308_42	UniRef90	UniRef90_I6SZA1	Gp8 protein	NA
UHGV-0048308_42	eggNOG-mapper	565664.EFXG_01772	NA	NA
UHGV-0048308_43	PHROG	phrog_5509	neck protein	connector
UHGV-0048308_43	UniRef90	UniRef90_I6SDV7	Gp9 protein	NA
UHGV-0048308_43	eggNOG-mapper	768486.EHR_09600	NA	NA
UHGV-0048308_43	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0048308_44	UniRef90	UniRef90_A0A828ZRA6	Phage major tail protein B	NA
UHGV-0048308_44	eggNOG-mapper	768486.EHR_09605	NA	NA
UHGV-0048308_44	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0048308_45	PHROG	phrog_5802	NA	unknown function
UHGV-0048308_45	eggNOG-mapper	565664.EFXG_01769	NA	NA
UHGV-0048308_46	PHROG	phrog_15063	NA	unknown function
UHGV-0048308_47	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0048308_47	UniRef90	UniRef90_A0A132P4B5	Phage tail protein	NA
UHGV-0048308_47	eggNOG-mapper	565664.EFXG_01767	Phage-related minor tail protein	NA
UHGV-0048308_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0048308_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0048308_47	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0048308_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0048308_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0048308_48	UniRef90	UniRef90_I6SDW0	Gp13 protein	NA
UHGV-0048308_48	eggNOG-mapper	565664.EFXG_01766	phage tail	NA
UHGV-0048308_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0048308_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0048308_49	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0048308_49	UniRef90	UniRef90_A0A132P4C1	Prophage_tail domain-containing protein	NA
UHGV-0048308_49	eggNOG-mapper	565664.EFXG_01765	Prophage endopeptidase tail	NA
UHGV-0048308_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0048308_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0048308_49	COG	COG4926	Phage-related protein	NA
UHGV-0048308_49	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0048308_50	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-0048308_50	PHROG	phrog_9884	NA	unknown function
UHGV-0048308_50	UniRef90	UniRef90_UPI00032EF109	BppU family phage baseplate upper protein	NA
UHGV-0048308_50	eggNOG-mapper	565664.EFXG_01764	NA	NA
UHGV-0048308_50	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-0048308_51	PHROG	phrog_689	holin	lysis
UHGV-0048308_51	UniRef90	UniRef90_A0A1L8WAB0	Holin	NA
UHGV-0048308_51	eggNOG-mapper	1158602.I590_03012	Haemolysin XhlA	NA
UHGV-0048308_51	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0048308_52	PHROG	phrog_881	holin	lysis
UHGV-0048308_52	UniRef90	UniRef90_C9AN11	Holin	NA
UHGV-0048308_52	eggNOG-mapper	768486.EHR_09645	Putative phage holin Dp-1	NA
UHGV-0048308_52	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0048308_52	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0048308_53	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0048308_53	PHROG	phrog_2338	endolysin	lysis
UHGV-0048308_53	UniRef90	UniRef90_A0A377MS14	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0048308_53	eggNOG-mapper	768486.EHR_09925	Ami_2	NA
UHGV-0048308_53	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0048308_53	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0048308_53	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0048308_54	PHROG	phrog_30113	NA	unknown function
UHGV-0048308_54	UniRef90	UniRef90_UPI00033050BC	NA	NA
UHGV-0048308_54	eggNOG-mapper	1158604.I591_00418	NA	NA
UHGV-0048308_54	Pfam	PF12686	NA	DUF3800
UHGV-0048308_54	Structural annotation	PF01351, MF_00052_A, TIGR00729, COG1039	NA	NA
UHGV-0048308_55	KOfam	K03704	cspA; cold shock protein	NA
UHGV-0048308_55	PHROG	phrog_729	cold shock protein	other
UHGV-0048308_55	UniRef90	UniRef90_R2MC62	Cold shock protein 2	NA
UHGV-0048308_55	eggNOG-mapper	1104325.M7W_2025	Cold shock	NA
UHGV-0048308_55	PADLOC	retron_type_V_csd_cluster85_1	NA	Retron
UHGV-0048308_55	Pfam	PF00313	'Cold-shock' DNA-binding domain	CSD
UHGV-0048308_55	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0048308_55	Structural annotation	PF00313, NF007062, COG1278	NA	NA