UHGV-0048377

Genome information

Genome length 41,278 bps

CDS count 78

Completeness 94.82% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048377
vOTU ID	vOTU-063157
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3580
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.82% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.23
Jumbo phage	No

Genome content
Genome length	41,278 bps
GC content	51.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	91.01%
Average CDS length	487.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048377_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0048377_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0048377_2	UniRef90	UniRef90_A0A1C5N467	Helix-turn-helix	NA
UHGV-0048377_2	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0048377_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048377_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0048377_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0048377_8	Structural annotation	PF13560	NA	NA
UHGV-0048377_11	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0048377_11	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0048377_11	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0048377_11	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0048377_11	Structural annotation	PF05565	NA	NA
UHGV-0048377_12	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048377_12	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0048377_12	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0048377_12	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0048377_13	PHROG	phrog_1389	NA	unknown function
UHGV-0048377_13	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0048377_13	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0048377_14	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048377_14	UniRef90	UniRef90_A0A2Z4QA94	Recombination protein	NA
UHGV-0048377_14	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0048377_14	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-0048377_15	PHROG	phrog_4973	NA	unknown function
UHGV-0048377_15	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-0048377_15	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0048377_15	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0048377_15	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0048377_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0048377_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0048377_16	UniRef90	UniRef90_A0A1C5N5W1	Single-stranded DNA-binding protein	NA
UHGV-0048377_16	eggNOG-mapper	1378168.N510_01674	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0048377_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0048377_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0048377_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0048377_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0048377_16	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0048377_17	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0048377_17	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0048377_18	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0048377_18	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0048377_18	UniRef90	UniRef90_A0A1C5N602	DNA repair protein RadA	NA
UHGV-0048377_18	eggNOG-mapper	1378168.N510_01441	NA	NA
UHGV-0048377_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0048377_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0048377_18	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-0048377_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0048377_20	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0048377_20	UniRef90	UniRef90_A0A1C5N534	Endodeoxyribonuclease RusA	NA
UHGV-0048377_20	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0048377_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0048377_20	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0048377_21	UniRef90	UniRef90_UPI0018AC14ED	Lar family restriction alleviation protein	NA
UHGV-0048377_21	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0048377_21	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0048377_22	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0048377_22	UniRef90	UniRef90_A0A8D9PDD1	DNA (Cytosine 5) methyltransferase	NA
UHGV-0048377_22	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0048377_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0048377_22	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0048377_25	PHROG	phrog_25732	NA	unknown function
UHGV-0048377_25	UniRef90	UniRef90_A0A7G9WJW0	Lar family restriction alleviation protein	NA
UHGV-0048377_25	Structural annotation	NF011227	NA	NA
UHGV-0048377_27	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0048377_32	PHROG	phrog_22543	NA	unknown function
UHGV-0048377_35	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0048377_35	UniRef90	UniRef90_A0A1C6IRL8	NA	NA
UHGV-0048377_35	eggNOG-mapper	1244856.K4PY83_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0048377_35	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0048377_35	Structural annotation	PF18909	NA	NA
UHGV-0048377_36	UniRef90	UniRef90_UPI00156FA052	NA	NA
UHGV-0048377_36	eggNOG-mapper	1227349.C170_11270	NA	NA
UHGV-0048377_36	Structural annotation	PF16475	NA	NA
UHGV-0048377_37	PHROG	phrog_2717	NA	unknown function
UHGV-0048377_37	eggNOG-mapper	552398.HMPREF0866_02231	NA	NA
UHGV-0048377_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0048377_40	UniRef90	UniRef90_U2SK55	DNA-binding helix-turn-helix protein	NA
UHGV-0048377_40	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0048377_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048377_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0048377_41	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0048377_41	UniRef90	UniRef90_A0A6G3M4V4	Helix-turn-helix domain-containing protein	NA
UHGV-0048377_41	eggNOG-mapper	1408437.JNJN01000045_gene597	HNH endonuclease	NA
UHGV-0048377_41	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0048377_41	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0048377_41	Structural annotation	PF07141	NA	NA
UHGV-0048377_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0048377_42	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0048377_42	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0048377_42	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0048377_42	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0048377_42	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0048377_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0048377_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0048377_42	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0048377_43	PHROG	phrog_533	portal protein	head and packaging
UHGV-0048377_43	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0048377_43	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0048377_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0048377_43	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0048377_44	PHROG	phrog_419	NA	unknown function
UHGV-0048377_44	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0048377_44	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0048377_45	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0048377_45	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0048377_45	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0048377_45	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0048377_45	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0048377_45	COG	COG2369	NA	NA
UHGV-0048377_45	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0048377_46	Structural annotation	PF11607, MF_00436, NF011232, COG1923	NA	NA
UHGV-0048377_47	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0048377_47	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0048377_47	AcrCatalog	cluster_74817	NA	NA
UHGV-0048377_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-0048377_48	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0048377_48	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0048377_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0048377_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0048377_48	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0048377_48	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0048377_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0048377_49	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0048377_50	PHROG	phrog_3366	NA	unknown function
UHGV-0048377_50	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0048377_50	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0048377_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0048377_51	UniRef90	UniRef90_A0A1C5N8K8	Minor capsid protein	NA
UHGV-0048377_51	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0048377_51	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0048377_51	Structural annotation	PF11114	NA	NA
UHGV-0048377_52	PHROG	phrog_3266	tail completion	connector
UHGV-0048377_52	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0048377_52	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0048377_52	Structural annotation	PF12691	NA	NA
UHGV-0048377_53	PHROG	phrog_3707	membrane-flanked domain	moron, auxiliary metabolic gene and host takeover
UHGV-0048377_53	UniRef90	UniRef90_A0A1C5N7Y8	Bacterial membrane flanked domain	NA
UHGV-0048377_53	eggNOG-mapper	469604.HMPREF0946_01104	Bacterial PH domain	NA
UHGV-0048377_53	Pfam	PF03703	Bacterial PH domain	bPH_2
UHGV-0048377_53	COG	COG3428	NA	NA
UHGV-0048377_54	PHROG	phrog_3099	NA	unknown function
UHGV-0048377_54	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-0048377_54	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0048377_55	PHROG	phrog_11299	NA	unknown function
UHGV-0048377_55	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-0048377_55	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0048377_55	Structural annotation	PF10666	NA	NA
UHGV-0048377_56	PHROG	phrog_706	NA	unknown function
UHGV-0048377_56	UniRef90	UniRef90_A0A1C5N876	Bacteriophage Gp15 protein	NA
UHGV-0048377_56	eggNOG-mapper	999411.HMPREF1092_03313	Bacteriophage Gp15 protein	NA
UHGV-0048377_56	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0048377_56	Structural annotation	PF06854	NA	NA
UHGV-0048377_57	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0048377_57	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0048377_57	UniRef90	UniRef90_A0A1C5N801	ATPase involved in DNA repair	NA
UHGV-0048377_57	eggNOG-mapper	673837.D2IZU8_9CAUD	peptidoglycan catabolic process	NA
UHGV-0048377_58	PHROG	phrog_1194	NA	unknown function
UHGV-0048377_58	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0048377_58	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0048377_59	PHROG	phrog_32744	NA	unknown function
UHGV-0048377_59	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0048377_59	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0048377_61	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-0048377_61	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0048377_61	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0048377_62	PHROG	phrog_13589	NA	unknown function
UHGV-0048377_62	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0048377_62	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0048377_67	PHROG	phrog_937	hemolysin	other
UHGV-0048377_67	eggNOG-mapper	428125.CLOLEP_00170	NA	NA
UHGV-0048377_68	PHROG	phrog_1129	holin	lysis
UHGV-0048377_68	UniRef90	UniRef90_A0A416QZD1	Enolase	NA
UHGV-0048377_68	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0048377_68	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0048377_68	Structural annotation	PF06946	NA	NA
UHGV-0048377_71	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0048377_71	PHROG	phrog_15001	endolysin	lysis
UHGV-0048377_71	UniRef90	UniRef90_A0A1C5N9V0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0048377_71	eggNOG-mapper	552398.HMPREF0866_01156	Ami_2	NA
UHGV-0048377_71	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0048377_71	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0048377_71	Structural annotation	PF01510, MF_04111, COG5632	NA	NA
UHGV-0048377_72	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0048377_74	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0048377_76	PHROG	phrog_16490	NA	unknown function
UHGV-0048377_76	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0048377_77	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0048377_78	eggNOG-mapper	1378168.N510_03079	NA	NA