UHGV-0048408

Genome information

Genome length 46,118 bps

CDS count 68

Completeness 99.90% (high-quality)

geNomad score 0.9461

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048408
vOTU ID	vOTU-071404
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_1282
BioSample	NA
Country	Japan
Virus prediction confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9461
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.08
Jumbo phage	No

Genome content
Genome length	46,118 bps
GC content	28.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	88.25%
Average CDS length	600.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048408_1	KOfam	K14059	int; integrase	NA
UHGV-0048408_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0048408_1	UniRef90	UniRef90_UPI0018C6049C	site-specific integrase	NA
UHGV-0048408_1	eggNOG-mapper	546271.Selsp_1366	Belongs to the 'phage' integrase family	NA
UHGV-0048408_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0048408_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0048408_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0048408_1	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0048408_4	PHROG	phrog_6077	NA	unknown function
UHGV-0048408_4	UniRef90	UniRef90_UPI00195DBF59	sensor histidine kinase	NA
UHGV-0048408_4	eggNOG-mapper	523845.AQXV01000040_gene1689	NA	NA
UHGV-0048408_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0048408_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0048408_5	UniRef90	UniRef90_A0A378NT18	Transcriptional repressor DicA	NA
UHGV-0048408_5	eggNOG-mapper	585503.HMPREF7545_1709	Transcriptional	NA
UHGV-0048408_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048408_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0048408_5	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0048408_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0048408_6	UniRef90	UniRef90_A0A378NV12	Helix-turn-helix	NA
UHGV-0048408_6	eggNOG-mapper	864563.HMPREF9166_1287	sequence-specific DNA binding	NA
UHGV-0048408_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048408_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0048408_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0048408_7	KOfam	K03630	radC; DNA repair protein RadC	NA
UHGV-0048408_7	PHROG	phrog_10276	DNA repair protein	DNA, RNA and nucleotide metabolism
UHGV-0048408_7	UniRef90	UniRef90_UPI00143104F2	DNA repair protein RadC	NA
UHGV-0048408_7	eggNOG-mapper	1304284.L21TH_2133	Belongs to the UPF0758 family	NA
UHGV-0048408_7	Pfam	PF04002	RadC-like JAB domain	RadC
UHGV-0048408_7	NCBIFam	TIGR00608.1	DNA repair protein RadC	NA
UHGV-0048408_7	COG	COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	NA
UHGV-0048408_8	UniRef90	UniRef90_UPI0018C8118B	helix-turn-helix domain-containing protein	NA
UHGV-0048408_8	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0048408_9	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0048408_9	UniRef90	UniRef90_H3K6A6	HTH cro/C1-type domain-containing protein	NA
UHGV-0048408_9	eggNOG-mapper	246194.CHY_1694	Helix-turn-helix XRE-family like proteins	NA
UHGV-0048408_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048408_9	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0048408_9	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0048408_13	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0048408_13	UniRef90	UniRef90_UPI0018C46309	ATP-binding protein	NA
UHGV-0048408_13	eggNOG-mapper	445972.ANACOL_00146	AAA domain	NA
UHGV-0048408_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-0048408_13	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0048408_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0048408_14	UniRef90	UniRef90_A0A2Z4QA33	PD-(D/E)XK nuclease	NA
UHGV-0048408_14	eggNOG-mapper	718252.FP2_01050	NA	NA
UHGV-0048408_14	Structural annotation	PF10926, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0048408_15	PHROG	phrog_398	NA	unknown function
UHGV-0048408_15	UniRef90	UniRef90_UPI0018C6CD3B	putative HNHc nuclease	NA
UHGV-0048408_15	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0048408_15	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0048408_15	Structural annotation	PF16784	NA	NA
UHGV-0048408_16	PHROG	phrog_9403	NA	unknown function
UHGV-0048408_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0048408_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0048408_18	UniRef90	UniRef90_A0A1H8EJI9	DNA replication protein DnaC	NA
UHGV-0048408_18	eggNOG-mapper	546271.Selsp_1349	Primosomal protein DnaI	NA
UHGV-0048408_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0048408_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0048408_18	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0048408_20	UniRef90	UniRef90_I0GS13	Putative RusA family protein	NA
UHGV-0048408_20	eggNOG-mapper	1280706.AUJE01000003_gene2276	Endodeoxyribonuclease RusA	NA
UHGV-0048408_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0048408_22	eggNOG-mapper	742738.HMPREF9460_01904	NA	NA
UHGV-0048408_23	PHROG	phrog_5164	NA	unknown function
UHGV-0048408_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0048408_27	UniRef90	UniRef90_UPI00195D58A8	NA	NA
UHGV-0048408_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0048408_27	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0048408_28	PHROG	phrog_4962	NA	unknown function
UHGV-0048408_28	UniRef90	UniRef90_UPI001CD604FF	FRG domain-containing protein	NA
UHGV-0048408_28	eggNOG-mapper	1395587.P364_0121970	FRG domain	NA
UHGV-0048408_28	Pfam	PF08867	FRG domain	FRG
UHGV-0048408_29	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0048408_29	PHROG	phrog_12517	NA	unknown function
UHGV-0048408_29	UniRef90	UniRef90_H3K686	ParB-like partition protein	NA
UHGV-0048408_29	eggNOG-mapper	794903.OPIT5_03875	N-4 methylation of cytosine	NA
UHGV-0048408_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0048408_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0048408_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0048408_29	COG	COG0863	DNA modification methylase	NA
UHGV-0048408_29	Structural annotation	PF02195, PF01170, MF_02015, MF_01872, TIGR01177, TIGR04285, COG1041, COG5119	NA	NA
UHGV-0048408_30	PHROG	phrog_10302	NA	unknown function
UHGV-0048408_30	eggNOG-mapper	1035196.HMPREF9998_01727	NA	NA
UHGV-0048408_31	PHROG	phrog_6299	terminase small subunit	head and packaging
UHGV-0048408_31	eggNOG-mapper	1226322.HMPREF1545_03543	NA	NA
UHGV-0048408_32	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0048408_32	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0048408_32	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0048408_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0048408_32	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0048408_32	COG	COG5410	NA	NA
UHGV-0048408_32	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0048408_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0048408_33	UniRef90	UniRef90_A0A378NUY6	Phage portal protein, SPP1 family	NA
UHGV-0048408_33	eggNOG-mapper	568816.Acin_1385	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0048408_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0048408_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0048408_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0048408_34	UniRef90	UniRef90_UPI00143072B4	minor capsid protein	NA
UHGV-0048408_34	eggNOG-mapper	1123511.KB905868_gene185	Phage Mu protein F like protein	NA
UHGV-0048408_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0048408_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0048408_34	COG	COG2369	NA	NA
UHGV-0048408_34	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0048408_35	PHROG	phrog_29127	NA	unknown function
UHGV-0048408_35	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-0048408_36	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0048408_36	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0048408_36	UniRef90	UniRef90_UPI001430CFAD	collagen-like protein	NA
UHGV-0048408_36	eggNOG-mapper	546262.NEICINOT_04784	Hep Hag repeat protein	NA
UHGV-0048408_36	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0048408_36	COG	COG5295	Autotransporter adhesin	NA
UHGV-0048408_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0048408_37	UniRef90	UniRef90_A0A378NUD8	Phage minor structural protein GP20	NA
UHGV-0048408_37	eggNOG-mapper	1111454.HMPREF1250_0184	Phage minor structural protein GP20	NA
UHGV-0048408_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0048408_37	Structural annotation	PF06810	NA	NA
UHGV-0048408_38	PHROG	phrog_247	major head protein	head and packaging
UHGV-0048408_38	UniRef90	UniRef90_UPI001D00946D	major capsid protein	NA
UHGV-0048408_38	eggNOG-mapper	568816.Acin_1382	NA	NA
UHGV-0048408_38	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0048408_38	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0048408_39	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0048408_39	UniRef90	UniRef90_UPI001431B9C6	phage head-tail connector protein	NA
UHGV-0048408_39	eggNOG-mapper	1567014.A0A0A7RTX9_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-0048408_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0048408_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0048408_40	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0048408_40	UniRef90	UniRef90_UPI000ACDB421	ABC transporter ATP-binding protein	NA
UHGV-0048408_40	eggNOG-mapper	469618.FVAG_01313	NA	NA
UHGV-0048408_40	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0048408_42	eggNOG-mapper	411902.CLOBOL_03472	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0048408_43	PHROG	phrog_525	NA	unknown function
UHGV-0048408_43	UniRef90	UniRef90_A9KQ05	NA	NA
UHGV-0048408_43	eggNOG-mapper	1123511.KB905868_gene177	NA	NA
UHGV-0048408_43	Pfam	PF20765	NA	DUF6838
UHGV-0048408_43	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0048408_44	PHROG	phrog_966	NA	unknown function
UHGV-0048408_45	PHROG	phrog_279	tail sheath	tail
UHGV-0048408_45	UniRef90	UniRef90_UPI00195AC914	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0048408_45	eggNOG-mapper	1123511.KB905868_gene175	Phage tail sheath C-terminal domain	NA
UHGV-0048408_45	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0048408_45	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0048408_45	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0048408_45	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0048408_46	PHROG	phrog_365	tail protein	tail
UHGV-0048408_46	UniRef90	UniRef90_UPI001959F06B	phage tail tube protein	NA
UHGV-0048408_46	eggNOG-mapper	1123511.KB905868_gene174	Phage tail tube protein	NA
UHGV-0048408_46	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0048408_46	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0048408_47	Structural annotation	PF18933, MF_02248, NF040946, COG5435	NA	NA
UHGV-0048408_48	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0048408_48	UniRef90	UniRef90_UPI0014317D65	phage portal protein	NA
UHGV-0048408_48	eggNOG-mapper	1123511.KB905868_gene173	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0048408_48	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0048408_48	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0048408_49	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0048408_49	UniRef90	UniRef90_UPI00142FDB3B	tape measure protein	NA
UHGV-0048408_49	eggNOG-mapper	1123511.KB905868_gene171	tape measure	NA
UHGV-0048408_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0048408_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0048408_49	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0048408_49	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0048408_50	PHROG	phrog_380	endolysin	lysis
UHGV-0048408_50	UniRef90	UniRef90_A0A4R1PW24	LysM domain-containing protein	NA
UHGV-0048408_50	eggNOG-mapper	1123511.KB905868_gene170	PFAM LysM domain	NA
UHGV-0048408_50	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0048408_50	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0048408_51	PHROG	phrog_400	tail protein	tail
UHGV-0048408_51	UniRef90	UniRef90_UPI0014307448	hydrolase	NA
UHGV-0048408_51	eggNOG-mapper	1123511.KB905868_gene169	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0048408_51	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0048408_51	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0048408_52	PHROG	phrog_579	NA	unknown function
UHGV-0048408_52	UniRef90	UniRef90_UPI00142F7EE5	NA	NA
UHGV-0048408_52	eggNOG-mapper	1123511.KB905868_gene168	NA	NA
UHGV-0048408_52	Pfam	PF10844	NA	DUF2577
UHGV-0048408_52	Structural annotation	PF10844	NA	NA
UHGV-0048408_53	PHROG	phrog_120	baseplate protein	tail
UHGV-0048408_53	UniRef90	UniRef90_UPI001959D5C6	NA	NA
UHGV-0048408_53	eggNOG-mapper	1123511.KB905868_gene167	NA	NA
UHGV-0048408_53	Pfam	PF10934	NA	DUF2634
UHGV-0048408_53	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0048408_53	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0048408_54	PHROG	phrog_6	baseplate protein	tail
UHGV-0048408_54	UniRef90	UniRef90_UPI00195CBEBD	baseplate J/gp47 family protein	NA
UHGV-0048408_54	eggNOG-mapper	1123511.KB905868_gene166	Baseplate J-like protein	NA
UHGV-0048408_54	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0048408_54	COG	COG3299	NA	NA
UHGV-0048408_54	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0048408_55	PHROG	phrog_521	tail protein	tail
UHGV-0048408_55	UniRef90	UniRef90_UPI0019596FF9	NA	NA
UHGV-0048408_55	eggNOG-mapper	696281.Desru_1324	NA	NA
UHGV-0048408_55	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0048408_55	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0048408_55	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0048408_56	eggNOG-mapper	1122918.KB907250_gene3597	Phage tail-collar fibre protein	NA
UHGV-0048408_56	Structural annotation	PF12571	NA	NA
UHGV-0048408_57	PHROG	phrog_18608	NA	unknown function
UHGV-0048408_57	eggNOG-mapper	1122917.KB899673_gene660	NA	NA
UHGV-0048408_57	Structural annotation	PF18463, NF012201	NA	NA
UHGV-0048408_58	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0048408_60	eggNOG-mapper	1200557.JHWV01000001_gene254	NA	NA
UHGV-0048408_62	KOfam	K14059	int; integrase	NA
UHGV-0048408_62	PHROG	phrog_1	integrase	integration and excision
UHGV-0048408_62	UniRef90	UniRef90_H3K6Q3	Core-binding (CB) domain-containing protein (Fragment)	NA
UHGV-0048408_62	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0048408_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0048408_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0048408_62	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0048408_63	PHROG	phrog_199	holin	lysis
UHGV-0048408_63	UniRef90	UniRef90_A0A1H8EGR7	Toxin secretion/phage lysis holin	NA
UHGV-0048408_63	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-0048408_63	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0048408_63	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0048408_63	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0048408_63	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0048408_64	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0048408_64	PHROG	phrog_435	endolysin	lysis
UHGV-0048408_64	UniRef90	UniRef90_A0A1H8EGV1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0048408_64	eggNOG-mapper	1232428.CAVO010000002_gene2340	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0048408_64	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0048408_64	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0048408_64	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0048408_67	eggNOG-mapper	568816.Acin_1213	NA	NA