UHGV-0048441

Genome information

Genome length 36,998 bps

CDS count 58

Completeness 99.71% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048441
vOTU ID	vOTU-064399
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_4431
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.95
Jumbo phage	No

Genome content
Genome length	36,998 bps
GC content	36.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.93%
Average CDS length	602.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048441_1	KOfam	K15640	K15640, phoE; uncharacterized phosphatase	NA
UHGV-0048441_1	PHROG	phrog_12933	NA	unknown function
UHGV-0048441_1	UniRef90	UniRef90_R7GKM9	Phosphoglycerate mutase family protein	NA
UHGV-0048441_1	eggNOG-mapper	1504823.CCMM01000013_gene2804	alpha-ribazole phosphatase activity	NA
UHGV-0048441_1	Pfam	PF00300	Histidine phosphatase superfamily (branch 1)	His_Phos_1
UHGV-0048441_1	COG	COG0406	Broad specificity phosphatase PhoE	NA
UHGV-0048441_1	Structural annotation	PF00300, MF_01040, NF009994, COG0406	NA	NA
UHGV-0048441_2	KOfam	K14059	int; integrase	NA
UHGV-0048441_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0048441_2	UniRef90	UniRef90_E2NR65	Site-specific recombinase, phage integrase family	NA
UHGV-0048441_2	eggNOG-mapper	1504823.CCMM01000008_gene1083	DNA integration	NA
UHGV-0048441_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0048441_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0048441_2	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0048441_3	PHROG	phrog_7115	NA	unknown function
UHGV-0048441_3	UniRef90	UniRef90_E2NR66	bPH_1 domain-containing protein	NA
UHGV-0048441_3	eggNOG-mapper	633697.EubceDRAFT1_1609	Bacterial PH domain	NA
UHGV-0048441_3	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0048441_3	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0048441_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0048441_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0048441_4	UniRef90	UniRef90_E2NR67	DNA-binding helix-turn-helix protein	NA
UHGV-0048441_4	eggNOG-mapper	552396.HMPREF0863_02447	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-0048441_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048441_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0048441_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0048441_4	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0048441_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0048441_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0048441_5	UniRef90	UniRef90_E2NR68	DNA-binding helix-turn-helix protein	NA
UHGV-0048441_5	eggNOG-mapper	642492.Clole_1473	sequence-specific DNA binding	NA
UHGV-0048441_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048441_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0048441_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0048441_6	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0048441_6	UniRef90	UniRef90_E2NR69	Phage antirepressor protein	NA
UHGV-0048441_6	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0048441_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0048441_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0048441_6	COG	COG3617	Prophage antirepressor	NA
UHGV-0048441_6	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0048441_7	UniRef90	UniRef90_A0A416DT94	DNA-binding protein	NA
UHGV-0048441_7	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0048441_10	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0048441_10	PHROG	phrog_1499	NA	unknown function
UHGV-0048441_10	UniRef90	UniRef90_E2NR75	RecF/RecN/SMC N-terminal domain protein	NA
UHGV-0048441_10	eggNOG-mapper	1214217.ALNF01000014_gene1402	AAA domain	NA
UHGV-0048441_10	Pfam	PF13476	AAA domain	AAA_23
UHGV-0048441_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0048441_10	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0048441_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0048441_11	UniRef90	UniRef90_UPI001E57C8F5	ATP-binding protein	NA
UHGV-0048441_11	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-0048441_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0048441_11	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0048441_12	PHROG	phrog_2698	NA	unknown function
UHGV-0048441_12	UniRef90	UniRef90_UPI001F15B425	NA	NA
UHGV-0048441_12	eggNOG-mapper	650150.ERH_0593	NA	NA
UHGV-0048441_12	Pfam	PF05037	NA	DUF669
UHGV-0048441_12	Structural annotation	PF05037	NA	NA
UHGV-0048441_13	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0048441_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0048441_13	UniRef90	UniRef90_E2NR78	Helicase C-terminal domain protein	NA
UHGV-0048441_13	eggNOG-mapper	1232449.BAHV02000008_gene620	helicase superfamily c-terminal domain	NA
UHGV-0048441_13	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0048441_13	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0048441_13	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0048441_13	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0048441_13	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0048441_14	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0048441_14	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0048441_14	UniRef90	UniRef90_E2NR79	Primase C terminal 2 (PriCT-2)	NA
UHGV-0048441_14	eggNOG-mapper	610130.Closa_1370	Primase C terminal 2 (PriCT-2)	NA
UHGV-0048441_14	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0048441_14	Pfam	PF13481	AAA domain	AAA_25
UHGV-0048441_14	COG	COG3598	RecA-family ATPase	NA
UHGV-0048441_14	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0048441_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0048441_15	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0048441_15	UniRef90	UniRef90_E2NR80	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0048441_15	eggNOG-mapper	1232449.BAHV02000018_gene1542	Endodeoxyribonuclease RusA	NA
UHGV-0048441_15	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0048441_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0048441_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0048441_17	Structural annotation	PF10656	NA	NA
UHGV-0048441_18	PHROG	phrog_4856	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0048441_18	UniRef90	UniRef90_E2NR83	MazG domain-containing protein	NA
UHGV-0048441_18	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0048441_18	Structural annotation	MF_01019, NF002747, COG0140	NA	NA
UHGV-0048441_20	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0048441_22	PHROG	phrog_22292	NA	unknown function
UHGV-0048441_22	eggNOG-mapper	1336234.JAGN01000004_gene538	NA	NA
UHGV-0048441_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0048441_25	Pfam	PF07374	NA	DUF1492
UHGV-0048441_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0048441_25	Structural annotation	PF08281, MF_00674, NF007227, COG1191	NA	NA
UHGV-0048441_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0048441_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0048441_26	UniRef90	UniRef90_E2NR91	Terminase small subunit	NA
UHGV-0048441_26	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-0048441_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0048441_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0048441_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0048441_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0048441_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0048441_27	UniRef90	UniRef90_E2NR92	Phage terminase, large subunit, PBSX family	NA
UHGV-0048441_27	eggNOG-mapper	1504823.CCMM01000008_gene1048	DNA packaging	NA
UHGV-0048441_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0048441_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0048441_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0048441_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0048441_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0048441_28	PHROG	phrog_1233	NA	unknown function
UHGV-0048441_28	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0048441_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0048441_29	UniRef90	UniRef90_E2NR94	Putative phage portal protein, SPP1 family	NA
UHGV-0048441_29	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0048441_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0048441_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0048441_30	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0048441_30	UniRef90	UniRef90_E2NR95	Phage protein F-like protein	NA
UHGV-0048441_30	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0048441_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0048441_30	COG	COG2369	NA	NA
UHGV-0048441_30	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0048441_32	PHROG	phrog_30609	NA	unknown function
UHGV-0048441_32	Structural annotation	PF21485	NA	NA
UHGV-0048441_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0048441_33	UniRef90	UniRef90_UPI00137B133A	phage scaffolding protein	NA
UHGV-0048441_33	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0048441_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0048441_33	Structural annotation	PF06810	NA	NA
UHGV-0048441_34	PHROG	phrog_212	major head protein	head and packaging
UHGV-0048441_34	UniRef90	UniRef90_UPI001C105D30	phage capsid protein	NA
UHGV-0048441_34	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0048441_34	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0048441_34	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0048441_35	PHROG	phrog_15682	NA	unknown function
UHGV-0048441_35	eggNOG-mapper	935836.JAEL01000086_gene51	NA	NA
UHGV-0048441_36	PHROG	phrog_1236	head protein	head and packaging
UHGV-0048441_36	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0048441_36	Structural annotation	PF05135	NA	NA
UHGV-0048441_37	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0048441_37	UniRef90	UniRef90_E2NRA2	Putative phage head-tail adaptor	NA
UHGV-0048441_37	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0048441_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0048441_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0048441_38	UniRef90	UniRef90_UPI00189F42E9	HK97 gp10 family phage protein	NA
UHGV-0048441_38	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0048441_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0048441_38	Structural annotation	PF11114, TIGR01725, COG5005	NA	NA
UHGV-0048441_39	PHROG	phrog_957	head protein	head and packaging
UHGV-0048441_39	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-0048441_39	Structural annotation	PF12691	NA	NA
UHGV-0048441_40	PHROG	phrog_885	major tail protein	tail
UHGV-0048441_40	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0048441_40	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0048441_41	PHROG	phrog_1021	NA	unknown function
UHGV-0048441_41	eggNOG-mapper	86416.Clopa_2788	NA	NA
UHGV-0048441_42	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-0048441_42	UniRef90	UniRef90_A0A0D0RHE1	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-0048441_43	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0048441_43	UniRef90	UniRef90_A0A1P8BMM1	Tail tapemeasure protein	NA
UHGV-0048441_43	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0048441_43	COG	COG5412	Phage-related protein	NA
UHGV-0048441_44	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0048441_44	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0048441_44	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0048441_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0048441_45	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0048441_45	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0048441_46	PHROG	phrog_538	minor tail protein	tail
UHGV-0048441_46	UniRef90	UniRef90_A0A1M6B1Q8	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0048441_46	eggNOG-mapper	1232446.BAIE02000011_gene1584	NA	NA
UHGV-0048441_46	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0048441_46	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0048441_47	PHROG	phrog_9994	NA	unknown function
UHGV-0048441_47	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-0048441_47	eggNOG-mapper	1232446.BAIE02000011_gene1583	NA	NA
UHGV-0048441_47	Structural annotation	PF20747	NA	NA
UHGV-0048441_48	PHROG	phrog_15594	NA	unknown function
UHGV-0048441_48	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0048441_48	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0048441_49	PHROG	phrog_31538	NA	unknown function
UHGV-0048441_49	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0048441_50	PHROG	phrog_13589	NA	unknown function
UHGV-0048441_50	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-0048441_51	PHROG	phrog_31573	NA	unknown function
UHGV-0048441_51	UniRef90	UniRef90_E2NRB6	GDSL-like protein	NA
UHGV-0048441_51	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0048441_51	Structural annotation	PF14606, PF01664, NF007819	NA	NA
UHGV-0048441_52	PHROG	phrog_199	holin	lysis
UHGV-0048441_52	UniRef90	UniRef90_E2NRB7	Toxin secretion/phage lysis holin	NA
UHGV-0048441_52	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0048441_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0048441_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0048441_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0048441_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0048441_53	PHROG	phrog_918	NA	unknown function
UHGV-0048441_53	UniRef90	UniRef90_UPI001E4BD730	NA	NA
UHGV-0048441_53	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0048441_53	Pfam	PF19791	NA	DUF6275
UHGV-0048441_53	Structural annotation	PF19791	NA	NA
UHGV-0048441_54	PHROG	phrog_10898	NA	unknown function
UHGV-0048441_54	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0048441_54	eggNOG-mapper	1200792.AKYF01000021_gene5329	domain, Protein	NA
UHGV-0048441_54	COG	COG5492	NA	NA
UHGV-0048441_54	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0048441_55	PHROG	phrog_10898	NA	unknown function
UHGV-0048441_55	Structural annotation	PF13157, PF16408, NF033510, COG4935	NA	NA
UHGV-0048441_56	PHROG	phrog_28650	NA	unknown function
UHGV-0048441_57	PHROG	phrog_29267	NA	unknown function
UHGV-0048441_57	Structural annotation	PF20164, NF038186, COG5513	NA	NA
UHGV-0048441_58	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0048441_58	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0048441_58	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0048441_58	Pfam	PF14359	NA	DUF4406
UHGV-0048441_58	Structural annotation	PF14359	NA	NA