UHGV-0048546

Genome information

Genome length 33,685 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048546
vOTU ID	vOTU-013161
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_25922
BioSample	SAMEA2042615
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.3
Jumbo phage	No

Genome content
Genome length	33,685 bps
GC content	34.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	86.07%
Average CDS length	547.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048546_1	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048546_1	UniRef90	UniRef90_E2NU82	HNH endonuclease domain protein	NA
UHGV-0048546_1	eggNOG-mapper	1232446.BAIE02000011_gene1603	HNH endonuclease domain protein	NA
UHGV-0048546_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0048546_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0048546_1	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0048546_2	PHROG	phrog_30609	NA	unknown function
UHGV-0048546_2	Structural annotation	PF21485	NA	NA
UHGV-0048546_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0048546_3	UniRef90	UniRef90_A0A6L8RVY0	Sigma70_r4 domain-containing protein	NA
UHGV-0048546_3	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0048546_3	Structural annotation	PF08281, MF_00674, NF007227, COG1191	NA	NA
UHGV-0048546_5	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0048546_5	UniRef90	UniRef90_A0A6N9L4W3	NA	NA
UHGV-0048546_5	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0048546_5	Pfam	PF06356	NA	DUF1064
UHGV-0048546_5	Structural annotation	PF06356	NA	NA
UHGV-0048546_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0048546_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0048546_6	UniRef90	UniRef90_UPI0006C3F2C5	single-stranded DNA-binding protein	NA
UHGV-0048546_6	eggNOG-mapper	1504823.CCMM01000012_gene1971	Single-strand binding protein family	NA
UHGV-0048546_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0048546_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0048546_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0048546_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0048546_6	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0048546_9	PHROG	phrog_22292	NA	unknown function
UHGV-0048546_9	eggNOG-mapper	1336234.JAGN01000004_gene538	NA	NA
UHGV-0048546_10	PHROG	phrog_22292	NA	unknown function
UHGV-0048546_10	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-0048546_13	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0048546_13	UniRef90	UniRef90_E2NR83	MazG domain-containing protein	NA
UHGV-0048546_13	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0048546_13	Structural annotation	MF_01019, NF002747, COG0140	NA	NA
UHGV-0048546_14	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0048546_14	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0048546_14	UniRef90	UniRef90_A0A6N9LBB7	Group II intron reverse transcriptase/maturase	NA
UHGV-0048546_14	eggNOG-mapper	428127.EUBDOL_00503	NA	NA
UHGV-0048546_14	PADLOC	PtuC2_00004	Reverse transcriptase	Septu
UHGV-0048546_14	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0048546_14	Pfam	PF08388	Group II intron, maturase-specific domain	GIIM
UHGV-0048546_14	NCBIFam	TIGR04416.1	group II intron reverse transcriptase/maturase	NA
UHGV-0048546_14	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0048546_14	Structural annotation	PF00078, PF08388, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0048546_16	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0048546_16	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0048546_16	UniRef90	UniRef90_UPI0014317E61	recombinase RecT	NA
UHGV-0048546_16	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0048546_16	Pfam	PF03837	RecT family	RecT
UHGV-0048546_16	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0048546_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0048546_16	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0048546_19	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048546_19	UniRef90	UniRef90_UPI0014313337	YqaJ viral recombinase family protein	NA
UHGV-0048546_19	eggNOG-mapper	857293.CAAU_0780	YqaJ-like viral recombinase domain	NA
UHGV-0048546_19	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0048546_19	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0048546_19	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0048546_19	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0048546_22	UniRef90	UniRef90_A0A1Y4QSI7	HTH cro/C1-type domain-containing protein	NA
UHGV-0048546_22	eggNOG-mapper	1123298.KB904077_gene435	Helix-turn-helix XRE-family like proteins	NA
UHGV-0048546_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0048546_25	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0048546_25	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0048546_25	UniRef90	UniRef90_UPI0018A91BF3	AAA family ATPase	NA
UHGV-0048546_25	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0048546_25	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0048546_25	COG	COG0305	Replicative DNA helicase	NA
UHGV-0048546_25	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0048546_26	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0048546_27	eggNOG-mapper	633147.Olsu_1237	NA	NA
UHGV-0048546_29	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0048546_29	PHROG	phrog_1493	endolysin	lysis
UHGV-0048546_29	UniRef90	UniRef90_A0A1Q6MQM1	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0048546_29	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0048546_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0048546_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0048546_29	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0048546_29	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0048546_31	PHROG	phrog_1129	holin	lysis
UHGV-0048546_31	UniRef90	UniRef90_A0A3E3DX81	Holin	NA
UHGV-0048546_31	eggNOG-mapper	552396.HMPREF0863_01649	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0048546_31	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0048546_31	Structural annotation	PF06946	NA	NA
UHGV-0048546_32	PHROG	phrog_1382	NA	unknown function
UHGV-0048546_32	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0048546_32	Structural annotation	NF040910	NA	NA
UHGV-0048546_35	Structural annotation	PF10651	NA	NA
UHGV-0048546_36	PHROG	phrog_9534	head protein	head and packaging
UHGV-0048546_36	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0048546_36	Structural annotation	PF08931, PF20747	NA	NA
UHGV-0048546_37	PHROG	phrog_538	minor tail protein	tail
UHGV-0048546_37	UniRef90	UniRef90_A0A6B9SRK1	Endopeptidase tail protein	NA
UHGV-0048546_37	eggNOG-mapper	457421.CBFG_03719	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0048546_37	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0048546_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0048546_38	PHROG	phrog_36410	NA	unknown function
UHGV-0048546_38	UniRef90	UniRef90_E2NU67	Putative phage tail component domain protein	NA
UHGV-0048546_38	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0048546_38	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0048546_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-0048546_38	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0048546_39	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0048546_39	UniRef90	UniRef90_UPI000E548070	PblA	NA
UHGV-0048546_39	eggNOG-mapper	875454.BAEW01000017_gene1587	nuclear chromosome segregation	NA
UHGV-0048546_39	COG	COG1511	NA	NA
UHGV-0048546_39	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0048546_40	PHROG	phrog_1633	NA	unknown function
UHGV-0048546_40	UniRef90	UniRef90_UPI0008268BC5	NA	NA
UHGV-0048546_40	eggNOG-mapper	1321820.HMPREF1983_00925	NA	NA
UHGV-0048546_40	Pfam	PF17318	NA	DUF5361
UHGV-0048546_40	Structural annotation	PF17318	NA	NA
UHGV-0048546_41	PHROG	phrog_1526	NA	unknown function
UHGV-0048546_41	UniRef90	UniRef90_G2SN49	NA	NA
UHGV-0048546_41	eggNOG-mapper	908337.HMPREF9257_0531	NA	NA
UHGV-0048546_42	PHROG	phrog_117	major tail protein	tail
UHGV-0048546_42	UniRef90	UniRef90_E2NU71	Prophage LambdaSa1, structural protein	NA
UHGV-0048546_42	eggNOG-mapper	1123263.AUKY01000068_gene494	NA	NA
UHGV-0048546_42	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0048546_43	PHROG	phrog_123	tail terminator	connector
UHGV-0048546_43	UniRef90	UniRef90_A0A139NAV0	Phage-associated protein	NA
UHGV-0048546_43	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0048546_43	Structural annotation	PF06141	NA	NA
UHGV-0048546_44	PHROG	phrog_387	neck protein	connector
UHGV-0048546_44	UniRef90	UniRef90_A0A380KNT4	NA	NA
UHGV-0048546_44	eggNOG-mapper	1423775.BAMN01000011_gene600	NA	NA
UHGV-0048546_45	PHROG	phrog_501	head closure Hc1	connector
UHGV-0048546_45	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0048546_45	eggNOG-mapper	43685.Q38120_BPR1T	NA	NA
UHGV-0048546_45	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0048546_46	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0048546_46	UniRef90	UniRef90_E2NU75	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0048546_46	eggNOG-mapper	1321820.HMPREF1983_00931	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0048546_46	Pfam	PF09355	NA	Phage_Gp19
UHGV-0048546_46	Structural annotation	PF09355	NA	NA
UHGV-0048546_47	PHROG	phrog_267	major head protein	head and packaging
UHGV-0048546_47	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-0048546_47	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0048546_47	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0048546_48	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0048546_48	UniRef90	UniRef90_A0A385AFW0	Phage scaffold protein	NA
UHGV-0048546_48	eggNOG-mapper	879308.HMPREF9130_1232	NA	NA
UHGV-0048546_48	Pfam	PF14265	NA	DUF4355
UHGV-0048546_48	Structural annotation	PF14265	NA	NA
UHGV-0048546_49	PHROG	phrog_17688	NA	unknown function
UHGV-0048546_49	UniRef90	UniRef90_E2NU78	Putative phage terminase, large subunit	NA
UHGV-0048546_49	eggNOG-mapper	936375.HMPREF1152_0677	phage terminase, large subunit	NA
UHGV-0048546_49	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0048546_49	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0048546_49	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0048546_50	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0048546_50	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0048546_50	UniRef90	UniRef90_A0A0K1LJA3	DNA methylase	NA
UHGV-0048546_50	eggNOG-mapper	1327981.R9ZYG2_9CAUD	helicase activity	NA
UHGV-0048546_50	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0048546_50	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0048546_50	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0048546_52	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0048546_52	UniRef90	UniRef90_M5J7C1	NA	NA
UHGV-0048546_52	eggNOG-mapper	938278.CAJO01000051_gene791	NA	NA
UHGV-0048546_53	PHROG	phrog_104	portal protein	head and packaging
UHGV-0048546_53	UniRef90	UniRef90_A0A1C5Y923	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0048546_53	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0048546_53	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0048546_53	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA