UHGV-0048574

Genome information

Genome length 30,006 bps

CDS count 35

Completeness 77.67% (medium-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048574
vOTU ID	vOTU-026487
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3644
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.98
Jumbo phage	No

Genome content
Genome length	30,006 bps
GC content	29.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	89.69%
Average CDS length	769.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048574_1	PHROG	phrog_29188	NA	unknown function
UHGV-0048574_2	eggNOG-mapper	1391647.AVSV01000022_gene2528	NA	NA
UHGV-0048574_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0048574_4	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0048574_4	UniRef90	UniRef90_A0A174GUU2	Transcriptional regulator	NA
UHGV-0048574_4	eggNOG-mapper	536233.CLO_0873	IrrE N-terminal-like domain	NA
UHGV-0048574_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048574_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0048574_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0048574_4	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-0048574_5	PHROG	phrog_25509	NA	unknown function
UHGV-0048574_5	eggNOG-mapper	1414720.CBYM010000002_gene580	NA	NA
UHGV-0048574_7	PHROG	phrog_1558	NA	unknown function
UHGV-0048574_7	UniRef90	UniRef90_A0A174GQI9	Sigma-70 region 4 type 2	NA
UHGV-0048574_7	eggNOG-mapper	1187894.I2E8Y5_9CAUD	NA	NA
UHGV-0048574_7	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0048574_9	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048574_9	UniRef90	UniRef90_A0A174GV92	Phage endonuclease	NA
UHGV-0048574_9	eggNOG-mapper	935948.KE386495_gene1338	HNH nucleases	NA
UHGV-0048574_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0048574_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0048574_10	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0048574_10	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048574_10	UniRef90	UniRef90_A0A174GQ50	Phage-related Zn finger domain-containing protein	NA
UHGV-0048574_10	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0048574_11	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0048574_11	UniRef90	UniRef90_A0A1C6JZQ6	Phage terminase, small subunit	NA
UHGV-0048574_11	eggNOG-mapper	86416.Clopa_2744	phage terminase small subunit	NA
UHGV-0048574_11	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0048574_11	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0048574_11	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0048574_11	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0048574_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0048574_12	UniRef90	UniRef90_A0A174GQG9	Putative phage terminase, large subunit	NA
UHGV-0048574_12	eggNOG-mapper	1499684.CCNP01000020_gene2290	Terminase	NA
UHGV-0048574_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0048574_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0048574_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0048574_12	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0048574_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0048574_13	UniRef90	UniRef90_A0A174GUK4	Phage portal protein, HK97 family	NA
UHGV-0048574_13	eggNOG-mapper	1476973.JMMB01000007_gene1759	Phage portal protein	NA
UHGV-0048574_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0048574_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0048574_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0048574_13	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0048574_14	KOfam	K06904	NA	NA
UHGV-0048574_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0048574_14	UniRef90	UniRef90_A0A174GVP1	HK97 family phage prohead protease	NA
UHGV-0048574_14	eggNOG-mapper	1476973.JMMB01000007_gene1760	Caudovirus prohead serine protease	NA
UHGV-0048574_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0048574_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0048574_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0048574_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0048574_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0048574_15	UniRef90	UniRef90_A0A174GVS4	Phage major capsid protein, HK97 family	NA
UHGV-0048574_15	eggNOG-mapper	536233.CLO_1363	Phage capsid family	NA
UHGV-0048574_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0048574_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0048574_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0048574_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0048574_16	UniRef90	UniRef90_UPI0006A71EE9	head-tail connector protein	NA
UHGV-0048574_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0048574_17	UniRef90	UniRef90_A0A174GUX3	Phage head-tail joining protein	NA
UHGV-0048574_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0048574_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0048574_18	UniRef90	UniRef90_C4IGZ7	Phage protein, HK97 gp10 family	NA
UHGV-0048574_18	eggNOG-mapper	536233.CLO_1366	NA	NA
UHGV-0048574_18	Structural annotation	TIGR01725	NA	NA
UHGV-0048574_19	eggNOG-mapper	536233.CLO_1367	NA	NA
UHGV-0048574_19	Structural annotation	PF05657	NA	NA
UHGV-0048574_20	PHROG	phrog_88	major tail protein	tail
UHGV-0048574_20	UniRef90	UniRef90_A0A173YQ31	Phage major tail protein, phi13 family	NA
UHGV-0048574_20	eggNOG-mapper	1151292.QEW_0347	Phage tail tube protein	NA
UHGV-0048574_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0048574_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0048574_21	eggNOG-mapper	632245.CLP_2688	NA	NA
UHGV-0048574_21	Structural annotation	PF11836	NA	NA
UHGV-0048574_22	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0048574_22	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0048574_22	UniRef90	UniRef90_A0A174GWB8	TP901 family phage tail tape measure protein	NA
UHGV-0048574_22	eggNOG-mapper	632245.CLP_2687	phage tail tape measure protein	NA
UHGV-0048574_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0048574_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0048574_22	COG	COG5283	Phage-related tail protein	NA
UHGV-0048574_22	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0048574_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0048574_23	UniRef90	UniRef90_A0A174GT71	Tail component family protein	NA
UHGV-0048574_23	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0048574_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-0048574_23	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0048574_24	PHROG	phrog_2566	NA	unknown function
UHGV-0048574_24	UniRef90	UniRef90_U2PXN2	Prophage pi2 protein 49	NA
UHGV-0048574_24	eggNOG-mapper	702450.CUW_0544	NA	NA
UHGV-0048574_25	PHROG	phrog_1401	NA	unknown function
UHGV-0048574_25	UniRef90	UniRef90_UPI0018A98488	NA	NA
UHGV-0048574_25	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0048574_25	Structural annotation	PF07761	NA	NA
UHGV-0048574_26	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0048574_26	PHROG	phrog_36443	NA	unknown function
UHGV-0048574_26	UniRef90	UniRef90_A0A174GWT8	Phage minor structural protein	NA
UHGV-0048574_26	eggNOG-mapper	903814.ELI_3101	Phage minor structural protein	NA
UHGV-0048574_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0048574_26	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0048574_26	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0048574_26	COG	COG4926	Phage-related protein	NA
UHGV-0048574_27	PHROG	phrog_199	holin	lysis
UHGV-0048574_27	UniRef90	UniRef90_A0A174GWW6	Phage-related holin (Lysis protein)	NA
UHGV-0048574_27	eggNOG-mapper	1499684.CCNP01000023_gene3170	Bacteriophage holin family	NA
UHGV-0048574_27	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0048574_27	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0048574_27	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0048574_27	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0048574_28	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0048574_28	PHROG	phrog_12727	endolysin	lysis
UHGV-0048574_28	UniRef90	UniRef90_A0A174GRH6	Peptidoglycan hydrolase	NA
UHGV-0048574_28	eggNOG-mapper	1414720.CBYM010000001_gene715	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0048574_28	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0048574_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0048574_29	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0048574_29	UniRef90	UniRef90_A0A174GRK3	Prophage antirepressor	NA
UHGV-0048574_29	eggNOG-mapper	573061.Clocel_3584	Prophage antirepressor	NA
UHGV-0048574_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0048574_29	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0048574_29	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0048574_30	COG	COG0864	Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain	NA
UHGV-0048574_31	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0048574_31	UniRef90	UniRef90_A0A174GTW1	Iron dependent repressor, N-terminal DNA binding domain	NA
UHGV-0048574_31	eggNOG-mapper	632245.CLP_2588	NA	NA
UHGV-0048574_31	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0048574_31	Structural annotation	PF13730, MF_01586, NF040939, COG3355	NA	NA
UHGV-0048574_35	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0048574_35	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0048574_35	UniRef90	UniRef90_A0A174GXS3	DNA adenine methylase	NA
UHGV-0048574_35	eggNOG-mapper	1414720.CBYM010000002_gene545	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0048574_35	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0048574_35	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0048574_35	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0048574_35	COG	COG0338	DNA-adenine methylase	NA
UHGV-0048574_35	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA