UHGV-0048600

Genome information

vOTU vOTU-019108

Genome length 44,779 bps

CDS count 86

Completeness 77.61% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048600
vOTU ID	vOTU-019108
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_28841
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.09
Jumbo phage	No

Genome content
Genome length	44,779 bps
GC content	39.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	86
CDS density	87.16%
Average CDS length	458.09 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048600_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0048600_1	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0048600_1	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0048600_1	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0048600_1	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0048600_2	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0048600_2	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0048600_2	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0048600_2	COG	COG5410	NA	NA
UHGV-0048600_2	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0048600_7	Structural annotation	PF04466	NA	NA
UHGV-0048600_10	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0048600_11	UniRef90	UniRef90_A0A3R6JTP4	NA	NA
UHGV-0048600_11	Structural annotation	PF20037	NA	NA
UHGV-0048600_13	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0048600_13	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0048600_13	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0048600_13	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0048600_13	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0048600_13	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0048600_14	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0048600_15	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0048600_15	UniRef90	UniRef90_A0A1C5WGK5	ORF6N domain	NA
UHGV-0048600_15	eggNOG-mapper	658655.HMPREF0988_00907	ORF6N domain	NA
UHGV-0048600_15	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0048600_15	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0048600_16	PHROG	phrog_31631	NA	unknown function
UHGV-0048600_16	eggNOG-mapper	397290.C810_01351	NA	NA
UHGV-0048600_20	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0048600_21	UniRef90	UniRef90_A0A7X5I8Q7	Fork-head domain-containing protein	NA
UHGV-0048600_24	PHROG	phrog_1233	NA	unknown function
UHGV-0048600_24	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0048600_25	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0048600_26	PHROG	phrog_20016	NA	unknown function
UHGV-0048600_26	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0048600_26	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0048600_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0048600_27	PHROG	phrog_16490	NA	unknown function
UHGV-0048600_27	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0048600_28	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0048600_29	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0048600_31	KOfam	K14059	int; integrase	NA
UHGV-0048600_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0048600_31	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0048600_31	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0048600_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0048600_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0048600_31	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0048600_32	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0048600_32	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0048600_32	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0048600_33	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0048600_33	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0048600_33	AcrCatalog	cluster_47493	NA	NA
UHGV-0048600_33	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0048600_37	PHROG	phrog_874	NA	unknown function
UHGV-0048600_37	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0048600_37	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0048600_37	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0048600_42	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0048600_43	PHROG	phrog_8684	NA	unknown function
UHGV-0048600_43	UniRef90	UniRef90_A0A173RDP8	YopX protein	NA
UHGV-0048600_43	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0048600_43	Pfam	PF09643	YopX protein	YopX
UHGV-0048600_43	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0048600_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0048600_45	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0048600_46	PHROG	phrog_22292	NA	unknown function
UHGV-0048600_50	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0048600_50	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0048600_50	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0048600_50	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0048600_50	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0048600_50	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0048600_50	COG	COG0305	Replicative DNA helicase	NA
UHGV-0048600_50	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0048600_51	PHROG	phrog_11769	NA	unknown function
UHGV-0048600_51	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0048600_51	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0048600_51	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0048600_51	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0048600_51	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0048600_52	eggNOG-mapper	411471.SUBVAR_04346	NA	NA
UHGV-0048600_52	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0048600_54	PHROG	phrog_19106	NA	unknown function
UHGV-0048600_54	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0048600_54	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0048600_54	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0048600_54	Structural annotation	TIGR01453	NA	NA
UHGV-0048600_56	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0048600_56	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0048600_56	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0048600_56	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0048600_56	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0048600_56	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0048600_56	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0048600_58	PHROG	phrog_25456	NA	unknown function
UHGV-0048600_59	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0048600_59	UniRef90	UniRef90_UPI00189B4EB8	recombinase RecT	NA
UHGV-0048600_59	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0048600_59	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0048600_62	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0048600_64	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0048600_64	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048600_64	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0048600_64	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0048600_64	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0048600_64	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0048600_66	PHROG	phrog_26861	NA	unknown function
UHGV-0048600_66	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0048600_66	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0048600_66	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0048600_66	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0048600_66	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0048600_69	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0048600_69	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0048600_69	UniRef90	UniRef90_A0A844E191	Phage antirepressor Ant	NA
UHGV-0048600_69	eggNOG-mapper	1582156.A0A0A8WIG2_9CAUD	DNA binding	NA
UHGV-0048600_69	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0048600_69	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0048600_69	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0048600_74	PHROG	phrog_32192	NA	unknown function
UHGV-0048600_74	UniRef90	UniRef90_UPI001D0221FF	alanine-zipper protein	NA
UHGV-0048600_75	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0048600_75	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0048600_75	UniRef90	UniRef90_A0A173RCH7	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0048600_75	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0048600_75	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048600_75	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0048600_75	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0048600_78	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0048600_78	Structural annotation	NF040910	NA	NA
UHGV-0048600_79	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0048600_80	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0048600_80	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0048600_81	PHROG	phrog_17196	kinase	other
UHGV-0048600_81	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0048600_81	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0048600_82	PHROG	phrog_18190	NA	unknown function
UHGV-0048600_82	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0048600_82	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0048600_82	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0048600_82	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0048600_83	PHROG	phrog_1194	NA	unknown function
UHGV-0048600_83	Pfam	PF20458	NA	DUF6711
UHGV-0048600_83	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0048600_84	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0048600_84	UniRef90	UniRef90_UPI0009D7969F	transporter	NA
UHGV-0048600_84	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0048600_84	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0048600_84	COG	COG3617	Prophage antirepressor	NA
UHGV-0048600_84	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0048600_85	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0048600_85	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0048600_85	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0048600_86	PHROG	phrog_11489	NA	unknown function
UHGV-0048600_86	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0048600_86	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0048600_86	COG	COG1511	NA	NA