UHGV-0048710

Genome information

Genome length 36,316 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048710
vOTU ID	vOTU-013652
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_4186
BioSample	SAMEA728680
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.73
Jumbo phage	No

Genome content
Genome length	36,316 bps
GC content	50.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	87.51%
Average CDS length	549.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048710_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0048710_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0048710_1	UniRef90	UniRef90_I9GMF9	Core-binding (CB) domain-containing protein	NA
UHGV-0048710_1	eggNOG-mapper	997884.HMPREF1068_03093	Belongs to the 'phage' integrase family	NA
UHGV-0048710_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0048710_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0048710_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0048710_1	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA
UHGV-0048710_4	UniRef90	UniRef90_R6EHP5	DNA-binding helix-turn-helix protein	NA
UHGV-0048710_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048710_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0048710_5	UniRef90	UniRef90_R6EHP5	DNA-binding helix-turn-helix protein	NA
UHGV-0048710_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048710_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0048710_10	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0048710_10	UniRef90	UniRef90_UPI00167A33BF	ERF family protein	NA
UHGV-0048710_10	eggNOG-mapper	1327970.R9ZVT8_9CAUD	ERF superfamily	NA
UHGV-0048710_10	Pfam	PF04404	ERF superfamily	ERF
UHGV-0048710_10	Structural annotation	PF04404, COG5055	NA	NA
UHGV-0048710_11	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0048710_11	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0048710_11	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0048710_12	PHROG	phrog_16304	NA	unknown function
UHGV-0048710_12	UniRef90	UniRef90_R6E8M4	NA	NA
UHGV-0048710_12	eggNOG-mapper	742726.HMPREF9448_02012	HNH endonuclease	NA
UHGV-0048710_12	Pfam	PF19808	NA	DUF6291
UHGV-0048710_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0048710_12	Structural annotation	PF19808	NA	NA
UHGV-0048710_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0048710_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0048710_13	UniRef90	UniRef90_R6EFS7	Single-stranded DNA-binding protein	NA
UHGV-0048710_13	eggNOG-mapper	694427.Palpr_2919	Single-stranded DNA-binding protein	NA
UHGV-0048710_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0048710_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0048710_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0048710_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0048710_13	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0048710_16	Structural annotation	PF13973, TIGR00405, COG2139	NA	NA
UHGV-0048710_17	PHROG	phrog_625	NA	unknown function
UHGV-0048710_17	UniRef90	UniRef90_UPI001C4A4E88	ASCH domain-containing protein	NA
UHGV-0048710_17	eggNOG-mapper	926549.KI421517_gene2497	NA	NA
UHGV-0048710_17	Structural annotation	PF04322, NF003443	NA	NA
UHGV-0048710_19	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0048710_19	Structural annotation	PF01381, TIGR02607, COG3093	NA	NA
UHGV-0048710_21	Structural annotation	PF02699, TIGR00405, COG1862	NA	NA
UHGV-0048710_27	PHROG	phrog_824	NA	unknown function
UHGV-0048710_27	UniRef90	UniRef90_R6EHM3	VRR-NUC domain-containing protein	NA
UHGV-0048710_27	eggNOG-mapper	1122985.HMPREF1991_01533	VRR-NUC domain	NA
UHGV-0048710_27	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0048710_28	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0048710_28	UniRef90	UniRef90_A0A1Y4JY04	ParB domain-containing protein	NA
UHGV-0048710_28	eggNOG-mapper	1235835.C814_01175	NA	NA
UHGV-0048710_28	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0048710_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0048710_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0048710_28	COG	COG0863	DNA modification methylase	NA
UHGV-0048710_30	PHROG	phrog_15125	NA	unknown function
UHGV-0048710_30	eggNOG-mapper	1347393.HG726020_gene1343	NA	NA
UHGV-0048710_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0048710_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0048710_31	UniRef90	UniRef90_R6F235	Phage terminase large subunit PBSX family	NA
UHGV-0048710_31	eggNOG-mapper	742725.HMPREF9450_02102	Phage terminase, large subunit, PBSX family	NA
UHGV-0048710_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0048710_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0048710_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0048710_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0048710_31	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0048710_32	UniRef90	UniRef90_A0A845KIF3	NA	NA
UHGV-0048710_32	eggNOG-mapper	883096.HMPREF9699_01325	NA	NA
UHGV-0048710_32	Pfam	PF16476	NA	DUF5053
UHGV-0048710_32	Structural annotation	PF16476	NA	NA
UHGV-0048710_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0048710_33	UniRef90	UniRef90_A0A7J5TYC9	Phage portal protein	NA
UHGV-0048710_33	eggNOG-mapper	742725.HMPREF9450_02103	Portal protein	NA
UHGV-0048710_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0048710_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0048710_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0048710_34	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0048710_34	UniRef90	UniRef90_A0A6J5N4D3	Phage head morphogenesis domain containing protein	NA
UHGV-0048710_34	eggNOG-mapper	294631.Q5ZGF9_9CAUD	Phage Mu protein F like protein	NA
UHGV-0048710_34	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0048710_35	KOfam	K06904	NA	NA
UHGV-0048710_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0048710_35	UniRef90	UniRef90_R6E6C6	Caudovirus prohead protease	NA
UHGV-0048710_35	eggNOG-mapper	1226322.HMPREF1545_03547	Caudovirus prohead serine protease	NA
UHGV-0048710_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0048710_35	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0048710_35	COG	COG3740	Phage head maturation protease	NA
UHGV-0048710_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0048710_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0048710_36	UniRef90	UniRef90_A0A1V5ID18	Phage capsid family protein	NA
UHGV-0048710_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0048710_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0048710_36	Structural annotation	PF05065, PF15188, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0048710_37	Structural annotation	PF17900, TIGR02215	NA	NA
UHGV-0048710_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0048710_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0048710_39	eggNOG-mapper	1150474.JQJI01000006_gene802	NA	NA
UHGV-0048710_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0048710_39	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0048710_40	Structural annotation	PF16807, NF040576	NA	NA
UHGV-0048710_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0048710_44	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0048710_45	UniRef90	UniRef90_R6E8J8	Ribosomal_L12 domain-containing protein	NA
UHGV-0048710_45	eggNOG-mapper	742725.HMPREF9450_02124	NA	NA
UHGV-0048710_45	Structural annotation	PF14594, PF00542, MF_00368, TIGR03361, TIGR00855, COG4379, COG0222	NA	NA
UHGV-0048710_46	PHROG	phrog_23208	virion structural protein	head and packaging
UHGV-0048710_46	Structural annotation	PF14545, TIGR02268	NA	NA
UHGV-0048710_50	KOfam	K05811	yfiM; putative lipoprotein	NA
UHGV-0048710_50	eggNOG-mapper	1121100.JCM6294_1083	NA	NA
UHGV-0048710_50	Structural annotation	PF04892, NF008028, COG5544	NA	NA
UHGV-0048710_51	PHROG	phrog_20732	NA	unknown function
UHGV-0048710_51	UniRef90	UniRef90_UPI0009352414	phage holin family protein	NA
UHGV-0048710_51	eggNOG-mapper	484018.BACPLE_02426	Bacteriophage holin family	NA
UHGV-0048710_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0048710_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0048710_52	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0048710_52	PHROG	phrog_894	endolysin	lysis
UHGV-0048710_52	UniRef90	UniRef90_A0A1Y4CAH0	Peptidase_M15_3 domain-containing protein	NA
UHGV-0048710_52	eggNOG-mapper	1236514.BAKL01000055_gene3885	Peptidase M15	NA
UHGV-0048710_52	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0048710_52	COG	COG3108	NA	NA
UHGV-0048710_52	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0048710_53	UniRef90	UniRef90_R6E8J1	Putative lipoprotein	NA
UHGV-0048710_53	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-0048710_54	eggNOG-mapper	762968.HMPREF9441_00556	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0048710_54	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0048710_55	PHROG	phrog_16490	NA	unknown function
UHGV-0048710_55	UniRef90	UniRef90_A0A8F1B6S5	Outer capsid protein/viral fiber	NA
UHGV-0048710_55	eggNOG-mapper	762982.HMPREF9442_01201	NA	NA
UHGV-0048710_56	PHROG	phrog_28898	NA	unknown function
UHGV-0048710_56	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0048710_56	Structural annotation	PF21744	NA	NA