UHGV-0048836

Genome information

vOTU vOTU-020417

Genome length 28,966 bps

CDS count 49

Completeness 71.99% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048836
vOTU ID	vOTU-020417
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_24379
BioSample	SAMEA2042215
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.76
Jumbo phage	No

Genome content
Genome length	28,966 bps
GC content	59.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.92%
Average CDS length	552.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048836_2	PHROG	phrog_538	minor tail protein	tail
UHGV-0048836_2	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0048836_2	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0048836_2	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0048836_3	UniRef90	UniRef90_A0A7Y0EUM5	Tail fiber protein	NA
UHGV-0048836_3	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0048836_3	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0048836_4	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0048836_4	UniRef90	UniRef90_A0A6B8LK75	Phage tail protein	NA
UHGV-0048836_4	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0048836_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0048836_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0048836_4	COG	COG5283	Phage-related tail protein	NA
UHGV-0048836_4	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0048836_5	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-0048836_5	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-0048836_5	Structural annotation	PF08890	NA	NA
UHGV-0048836_6	PHROG	phrog_2491	major tail protein	tail
UHGV-0048836_6	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-0048836_6	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0048836_6	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-0048836_7	UniRef90	UniRef90_A0A3E5HKK5	Transcriptional regulator	NA
UHGV-0048836_7	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0048836_7	Structural annotation	PF06141	NA	NA
UHGV-0048836_8	PHROG	phrog_19109	NA	unknown function
UHGV-0048836_8	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0048836_8	Structural annotation	TIGR01725	NA	NA
UHGV-0048836_9	PHROG	phrog_13779	NA	unknown function
UHGV-0048836_9	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-0048836_9	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0048836_9	Pfam	PF19586	NA	DUF6093
UHGV-0048836_9	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0048836_10	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0048836_10	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0048836_10	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0048836_10	Pfam	PF09355	NA	Phage_Gp19
UHGV-0048836_10	Structural annotation	PF09355	NA	NA
UHGV-0048836_11	UniRef90	UniRef90_I3BBX9	Head fiber domain protein	NA
UHGV-0048836_12	PHROG	phrog_15682	NA	unknown function
UHGV-0048836_13	PHROG	phrog_212	major head protein	head and packaging
UHGV-0048836_13	UniRef90	UniRef90_A0A430FUD7	Phage capsid protein	NA
UHGV-0048836_13	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-0048836_13	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0048836_14	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0048836_14	UniRef90	UniRef90_UPI001115A562	NA	NA
UHGV-0048836_14	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-0048836_15	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0048836_15	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0048836_16	PHROG	phrog_104	portal protein	head and packaging
UHGV-0048836_16	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0048836_16	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0048836_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0048836_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0048836_17	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0048836_17	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0048836_17	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0048836_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0048836_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0048836_18	PHROG	phrog_226	minor tail protein	tail
UHGV-0048836_18	UniRef90	UniRef90_A0A3G3M4U7	Terminase small subunit	NA
UHGV-0048836_18	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0048836_19	UniRef90	UniRef90_A0A6B8LMD9	Hypoyhetical protein	NA
UHGV-0048836_20	PHROG	phrog_908	NA	unknown function
UHGV-0048836_20	UniRef90	UniRef90_A0A072N4W7	PhnA protein	NA
UHGV-0048836_20	eggNOG-mapper	78346.BRUM_0402	NA	NA
UHGV-0048836_20	Structural annotation	COG0789	NA	NA
UHGV-0048836_21	UniRef90	UniRef90_A0A412K9M9	Antitoxin	NA
UHGV-0048836_21	eggNOG-mapper	78346.BRUM_0403	NA	NA
UHGV-0048836_23	PHROG	phrog_3641	NA	unknown function
UHGV-0048836_23	eggNOG-mapper	398513.BBNG_00833	NA	NA
UHGV-0048836_25	UniRef90	UniRef90_A0A072MSY3	GTP-binding protein	NA
UHGV-0048836_26	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0048836_26	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-0048836_26	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0048836_28	UniRef90	UniRef90_UPI001CFBB2F5	zinc ribbon domain-containing protein	NA
UHGV-0048836_30	UniRef90	UniRef90_A0A1X2ZKC5	Transposase	NA
UHGV-0048836_30	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0048836_30	Structural annotation	PF01815	NA	NA
UHGV-0048836_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0048836_31	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0048836_31	UniRef90	UniRef90_A0A087D540	Putative endodeoxyribonuclease RusA family protein	NA
UHGV-0048836_31	eggNOG-mapper	78346.BRUM_0408	NA	NA
UHGV-0048836_31	Structural annotation	NF007305, COG4570	NA	NA
UHGV-0048836_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0048836_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0048836_32	UniRef90	UniRef90_A0A413KAY2	Single-stranded DNA-binding protein	NA
UHGV-0048836_32	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-0048836_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0048836_32	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0048836_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0048836_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0048836_32	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0048836_33	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0048836_33	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0048836_33	UniRef90	UniRef90_A0A173ZT77	p33	NA
UHGV-0048836_33	eggNOG-mapper	1341695.BBOMB_1056	RecT family	NA
UHGV-0048836_33	Pfam	PF03837	RecT family	RecT
UHGV-0048836_33	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0048836_33	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0048836_33	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0048836_34	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048836_34	UniRef90	UniRef90_A0A072N4V5	Endonuclease	NA
UHGV-0048836_34	eggNOG-mapper	1437610.BREU_1416	YqaJ-like viral recombinase domain	NA
UHGV-0048836_34	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0048836_34	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0048836_34	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0048836_34	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0048836_36	UniRef90	UniRef90_UPI00080BF96B	molecular chaperone GrpE	NA
UHGV-0048836_36	Structural annotation	PF01047	NA	NA
UHGV-0048836_37	UniRef90	UniRef90_A0A6B8LMI6	Hypoyhetical protein	NA
UHGV-0048836_38	UniRef90	UniRef90_A0A072MSX1	HTH_17 domain-containing protein	NA
UHGV-0048836_38	eggNOG-mapper	558173.CDOO_03875	Helix-turn-helix domain	NA
UHGV-0048836_38	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0048836_38	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0048836_39	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0048836_39	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0048836_39	UniRef90	UniRef90_A0A6A2RI40	Phage antirepressor Ant	NA
UHGV-0048836_39	eggNOG-mapper	78346.BRUM_0415	BRO family, N-terminal domain	NA
UHGV-0048836_39	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0048836_39	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0048836_39	COG	COG3617	Prophage antirepressor	NA
UHGV-0048836_39	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0048836_40	UniRef90	UniRef90_A0A6B8LJU6	Hypoyhetical protein	NA
UHGV-0048836_41	eggNOG-mapper	702459.BBPR_0888	NA	NA
UHGV-0048836_42	eggNOG-mapper	78346.BRUM_0417	NA	NA
UHGV-0048836_42	Structural annotation	PF12989	NA	NA
UHGV-0048836_44	UniRef90	UniRef90_A0A072MRY9	BetR domain-containing protein	NA
UHGV-0048836_44	eggNOG-mapper	78345.BMERY_0907	NA	NA
UHGV-0048836_44	Pfam	PF08667	BetR domain	BetR
UHGV-0048836_44	Structural annotation	PF08667, MF_00535, NF041951, COG3093	NA	NA
UHGV-0048836_45	UniRef90	UniRef90_A0A072N4U2	Anhydro-N-acetylmuramyl-tripeptide amidase	NA
UHGV-0048836_46	UniRef90	UniRef90_D4BRS9	HTH cro/C1-type domain-containing protein	NA
UHGV-0048836_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0048836_46	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0048836_47	PHROG	phrog_87	metallo-protease	other
UHGV-0048836_47	UniRef90	UniRef90_A0A564S201	Peptidase_M78 domain-containing protein	NA
UHGV-0048836_47	eggNOG-mapper	1435051.BMOU_0747	NA	NA
UHGV-0048836_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0048836_47	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0048836_48	UniRef90	UniRef90_A0A076JPS5	Cell surface protein	NA
UHGV-0048836_48	eggNOG-mapper	78346.BRUM_0423	NA	NA
UHGV-0048836_49	UniRef90	UniRef90_A7A599	Outer membrane insertion signal domain protein	NA
UHGV-0048836_49	eggNOG-mapper	1435051.BMOU_0750	NA	NA