UHGV-0048952

Genome information

Genome length 37,698 bps

CDS count 55

Completeness 95.47% (high-quality)

geNomad score 0.9604

Prediction confidence Confident

Genome information
Genome ID	UHGV-0048952
vOTU ID	vOTU-063169
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_3167
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9604
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.41
Jumbo phage	No

Genome content
Genome length	37,698 bps
GC content	28.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.60%
Average CDS length	609.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0048952_1	eggNOG-mapper	536233.CLO_0319	NA	NA
UHGV-0048952_2	PHROG	phrog_32160	NA	unknown function
UHGV-0048952_2	UniRef90	UniRef90_UPI001F165554	zinc ribbon domain-containing protein	NA
UHGV-0048952_2	eggNOG-mapper	929506.CbC4_1395	NA	NA
UHGV-0048952_3	PHROG	phrog_12848	NA	unknown function
UHGV-0048952_3	eggNOG-mapper	1443122.Z958_p0026	NA	NA
UHGV-0048952_4	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0048952_4	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0048952_4	UniRef90	UniRef90_UPI00067EA0E9	DEAD/DEAH box helicase family protein	NA
UHGV-0048952_4	eggNOG-mapper	1443122.Z958_p0025	DEAD-like helicases superfamily	NA
UHGV-0048952_4	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0048952_4	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0048952_4	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0048952_4	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0048952_4	Structural annotation	PF18766, PF16203, MF_00968, TIGR00348, COG1061	NA	NA
UHGV-0048952_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0048952_5	PHROG	phrog_6219	endolysin	lysis
UHGV-0048952_5	UniRef90	UniRef90_UPI00067F4B8D	glycosyl hydrolase	NA
UHGV-0048952_5	eggNOG-mapper	536233.CLO_1467	family 25	NA
UHGV-0048952_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0048952_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0048952_5	Structural annotation	PF01183, NF007360, COG3757	NA	NA
UHGV-0048952_6	PHROG	phrog_199	holin	lysis
UHGV-0048952_6	UniRef90	UniRef90_UPI000668F484	phage holin family protein	NA
UHGV-0048952_6	eggNOG-mapper	1567013.A0A0A7RTU1_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0048952_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0048952_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0048952_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0048952_7	eggNOG-mapper	445335.CBN_1461	NA	NA
UHGV-0048952_9	UniRef90	UniRef90_G3MAH0	Gp429	NA
UHGV-0048952_9	eggNOG-mapper	1084719.G3MAH0_9CAUD	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0048952_9	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0048952_9	Structural annotation	PF09693	NA	NA
UHGV-0048952_10	Pfam	PF09636	XkdW protein	XkdW
UHGV-0048952_12	PHROG	phrog_1220	head protein	head and packaging
UHGV-0048952_12	UniRef90	UniRef90_A0A6B3YJZ4	Phage tail protein (Fragment)	NA
UHGV-0048952_12	eggNOG-mapper	536232.CLM_2920	NA	NA
UHGV-0048952_13	PHROG	phrog_538	minor tail protein	tail
UHGV-0048952_13	UniRef90	UniRef90_UPI00067ECBCC	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0048952_13	eggNOG-mapper	431943.CKL_4055	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0048952_13	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0048952_13	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0048952_14	PHROG	phrog_36410	NA	unknown function
UHGV-0048952_14	UniRef90	UniRef90_UPI00067E8FE1	phage tail family protein	NA
UHGV-0048952_14	eggNOG-mapper	431943.CKL_4056	Phage tail protein	NA
UHGV-0048952_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0048952_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0048952_14	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0048952_15	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0048952_15	UniRef90	UniRef90_A0A2Z4WA05	Phage tail tape measure protein	NA
UHGV-0048952_15	eggNOG-mapper	180332.JTGN01000004_gene2272	Phage tail tape measure protein, TP901 family	NA
UHGV-0048952_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0048952_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0048952_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0048952_16	PHROG	phrog_29863	NA	unknown function
UHGV-0048952_16	eggNOG-mapper	755731.Clo1100_0553	NA	NA
UHGV-0048952_16	Structural annotation	PF17388	NA	NA
UHGV-0048952_17	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0048952_17	UniRef90	UniRef90_A0A401UUY1	S-l_SbsC_C domain-containing protein	NA
UHGV-0048952_17	eggNOG-mapper	86416.Clopa_0346	NA	NA
UHGV-0048952_17	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0048952_18	eggNOG-mapper	272623.L59277	NA	NA
UHGV-0048952_18	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0048952_19	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0048952_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0048952_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0048952_20	PHROG	phrog_19734	NA	unknown function
UHGV-0048952_20	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0048952_20	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0048952_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0048952_21	PHROG	phrog_749	NA	unknown function
UHGV-0048952_21	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-0048952_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0048952_22	UniRef90	UniRef90_A0A7T3K8K5	Phage major capsid protein	NA
UHGV-0048952_22	eggNOG-mapper	1415774.U728_1252	Phage capsid family	NA
UHGV-0048952_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0048952_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0048952_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0048952_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0048952_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0048952_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0048952_23	UniRef90	UniRef90_A0A7T3K8U5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0048952_23	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0048952_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0048952_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0048952_23	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0048952_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0048952_24	UniRef90	UniRef90_UPI0001668EB1	phage portal protein	NA
UHGV-0048952_24	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-0048952_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0048952_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0048952_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0048952_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0048952_25	PHROG	phrog_15580	NA	unknown function
UHGV-0048952_25	UniRef90	UniRef90_A0A7T3K8K9	UPF0147 family protein	NA
UHGV-0048952_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0048952_26	UniRef90	UniRef90_A0A7T3K8K1	Terminase large subunit	NA
UHGV-0048952_26	eggNOG-mapper	1415774.U728_1255	Phage Terminase	NA
UHGV-0048952_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0048952_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0048952_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0048952_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0048952_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0048952_27	UniRef90	UniRef90_A0A7T3K9P2	P27 family phage terminase small subunit	NA
UHGV-0048952_27	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-0048952_27	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0048952_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0048952_27	COG	COG5484	NA	NA
UHGV-0048952_27	Structural annotation	PF05119, PF06056, TIGR01558, COG3747	NA	NA
UHGV-0048952_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048952_28	UniRef90	UniRef90_A0A7T3N1J2	HNH endonuclease	NA
UHGV-0048952_28	eggNOG-mapper	86416.Clopa_0335	HNH nucleases	NA
UHGV-0048952_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0048952_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0048952_29	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0048952_29	PHROG	phrog_216	integrase	integration and excision
UHGV-0048952_29	UniRef90	UniRef90_A0A6M0RCM8	Site-specific integrase	NA
UHGV-0048952_29	eggNOG-mapper	1211817.CCAT010000008_gene935	integrase family	NA
UHGV-0048952_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0048952_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0048952_29	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0048952_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0048952_30	UniRef90	UniRef90_A0A7Y0HNT6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0048952_30	eggNOG-mapper	332101.JIBU02000023_gene4730	sigma factor activity	NA
UHGV-0048952_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0048952_30	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0048952_31	PHROG	phrog_32374	NA	unknown function
UHGV-0048952_32	PHROG	phrog_1974	NA	unknown function
UHGV-0048952_32	UniRef90	UniRef90_UPI001CF1D1E4	nucleoid-associated protein	NA
UHGV-0048952_32	eggNOG-mapper	445335.CBN_0209	37-kD nucleoid-associated bacterial protein	NA
UHGV-0048952_32	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0048952_32	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0048952_33	PHROG	phrog_1974	NA	unknown function
UHGV-0048952_33	UniRef90	UniRef90_A0A1L7JNP4	37-kD nucleoid-associated bacterial family protein	NA
UHGV-0048952_33	eggNOG-mapper	536232.CLM_1645	37-kD nucleoid-associated bacterial protein	NA
UHGV-0048952_33	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0048952_33	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0048952_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0048952_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0048952_34	UniRef90	UniRef90_A0A6M0REP7	Single-stranded DNA-binding protein	NA
UHGV-0048952_34	eggNOG-mapper	445335.CBN_3707	Single-stranded DNA-binding protein	NA
UHGV-0048952_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0048952_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0048952_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0048952_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0048952_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0048952_37	PHROG	phrog_5781	NA	unknown function
UHGV-0048952_37	UniRef90	UniRef90_UPI00067F1FCC	NA	NA
UHGV-0048952_37	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0048952_37	Pfam	PF14359	NA	DUF4406
UHGV-0048952_37	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0048952_37	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0048952_39	PHROG	phrog_23660	NA	unknown function
UHGV-0048952_39	UniRef90	UniRef90_A0A0C9LZ00	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	NA
UHGV-0048952_39	eggNOG-mapper	1158602.I590_02981	NA	NA
UHGV-0048952_40	PHROG	phrog_17499	NA	unknown function
UHGV-0048952_40	UniRef90	UniRef90_A0A060N6B4	CDC2L2 protein	NA
UHGV-0048952_40	eggNOG-mapper	1443122.Z958_p0012	NA	NA
UHGV-0048952_41	PHROG	phrog_874	NA	unknown function
UHGV-0048952_41	UniRef90	UniRef90_A0A3F2ZPX0	Upf86.8	NA
UHGV-0048952_41	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0048952_41	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0048952_42	PHROG	phrog_5164	NA	unknown function
UHGV-0048952_42	UniRef90	UniRef90_UPI00067EE647	nucleotide pyrophosphohydrolase	NA
UHGV-0048952_42	eggNOG-mapper	536232.CLM_1638	NA	NA
UHGV-0048952_42	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0048952_42	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0048952_43	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0048952_44	PHROG	phrog_9804	NA	unknown function
UHGV-0048952_44	UniRef90	UniRef90_UPI00067EAC6F	replicative helicase loader/inhibitor	NA
UHGV-0048952_44	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0048952_44	AcrCatalog	cluster_137185	NA	NA
UHGV-0048952_44	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0048952_44	Structural annotation	PF11417	NA	NA
UHGV-0048952_45	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0048952_45	UniRef90	UniRef90_A0A7U9GKG7	Phage replication initiation protein	NA
UHGV-0048952_45	eggNOG-mapper	1415774.U728_1701	DnaD domain protein	NA
UHGV-0048952_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0048952_45	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0048952_46	PHROG	phrog_11376	NA	unknown function
UHGV-0048952_46	UniRef90	UniRef90_A0A6M0R8G5	Helix-turn-helix domain-containing protein	NA
UHGV-0048952_47	PHROG	phrog_35134	NA	unknown function
UHGV-0048952_47	UniRef90	UniRef90_A0A1J1CUB2	Putative membrane protein	NA
UHGV-0048952_48	PHROG	phrog_2232	NA	unknown function
UHGV-0048952_48	UniRef90	UniRef90_UPI001788B17F	NA	NA
UHGV-0048952_48	eggNOG-mapper	218284.CCDN010000005_gene3396	NA	NA
UHGV-0048952_48	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0048952_48	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0048952_51	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0048952_51	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0048952_51	UniRef90	UniRef90_UPI00067F105B	phage antirepressor KilAC domain-containing protein	NA
UHGV-0048952_51	eggNOG-mapper	386415.NT01CX_2199	Phage antirepressor protein	NA
UHGV-0048952_51	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0048952_51	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0048952_51	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0048952_51	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0048952_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0048952_52	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0048952_52	UniRef90	UniRef90_UPI0004D5A97B	helix-turn-helix domain-containing protein	NA
UHGV-0048952_52	eggNOG-mapper	1031288.AXAA01000044_gene1980	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0048952_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0048952_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048952_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0048952_52	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0048952_53	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0048952_53	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0048952_53	UniRef90	UniRef90_UPI0006526BF4	helix-turn-helix domain-containing protein	NA
UHGV-0048952_53	eggNOG-mapper	1280692.AUJL01000022_gene552	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0048952_53	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0048952_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0048952_53	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0048952_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0048952_54	PHROG	phrog_87	metallo-protease	other
UHGV-0048952_54	UniRef90	UniRef90_A0A2Z4WAN1	PTS N-acetylglucosamine transporter subunit IIABC	NA
UHGV-0048952_54	eggNOG-mapper	86416.Clopa_1676	NA	NA
UHGV-0048952_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0048952_54	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0048952_54	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0048952_55	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0048952_55	PHROG	phrog_95	integrase	integration and excision
UHGV-0048952_55	UniRef90	UniRef90_UPI00067EDD91	recombinase family protein	NA
UHGV-0048952_55	eggNOG-mapper	1211817.CCAT010000012_gene2736	resolvase	NA
UHGV-0048952_55	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0048952_55	Pfam	PF07508	Recombinase	Recombinase
UHGV-0048952_55	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0048952_55	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0048952_55	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA